Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004583

Physical Location & Seq

Genomic Coordinates Forward (+)

22491925 .. 22492793

Gene Structure 869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g27190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTTTTCAGCGGCGCGTATCGTCCTACCGCTGTCATTGCCAGTGCTGGCCATAATTTATGAGTACTTCAGATCCAGACGGATATCGGAACTTCCTGAAGGCGTCGATCCTGAAATCCTTGATTGGATTCGGACACTCAACCCCGCCGAGCTCAATAGTATTAGGAATCGCGACCCTGCCTTCCTCGATGTGATTCGGAACTTGGACTCTGCTGCTTTCCCTTCGGAATTTTCTGGAAGCGTCGACGGTCCTCTAAACCCGCCGTCTGTTCCGTCTCCTGCCCCCGCTGTGCTTAATGGTGGAAGTTCAGAAAATAGAAGTGGGTCTAACTTCACCTTGGCTGCCTTTTCCGCTGCTCAAAGTCAAGCATCTGCATCAAAACGCCTCCAGAAAAAGAAAAGTCCGGTAAAGCAAGAATCTATTTCTTTGTCTGCTGAAGCAGCCGCAGCTCTGGAGGCATGTGAAAAGTGTCGACGAAGGGGAAACCAAGCATACCTTAATGGGGATCTGTCTAAAGCTGAGGACTGCTACACAAAAGGAGTGAAATGCGTTTCTAGAAATGAGACATCTAGAAGCTGTCTTAGGGCATTGATGCTGTGCTATAGCGACCGTGCAGCAACACGTCTGACTGTTGGAAGAATAAGAGATGCACTTGGGGACTGTATGACGGCTGATGATGGTGCTGTGCTGGCGAGATTGGCTGCGCCAACGTGGAGGGAGCTCGATGAAGAAGGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006457 GO:0006458 GO:0008047 GO:0008150 GO:0009987 GO:0030234 GO:0031072 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0051084 GO:0051085 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0061077 GO:0065007 GO:0065009 GO:0070013 GO:0080134 GO:0080135 GO:0098772 GO:1900034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ TPR_8

Protein Analysis

247

Amino Acids

26.68

Weight (kDa)

7.5

Isoelectric Point (pI)

58.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12430
fragaria_vesca	FvH4_3g28360 FvH4_3g28360 FvH4_3g28360 FvH4_3g28360
malus_domestica	MD03G1171100.v1.1 MD03G1171300.v1.1 MD11G1188500.v1.1 MD11G1188700.v1.1
prunus_persica	Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1
pyrus_communis	pycom03g12820 pycom03g12830 pycom03g12840 pycom03g12860 pycom11g16530 pycom15g27190
rosa_chinensis	RchiOBHm_Chr5g0053371
rosa_laevigata	RLG00000034766
rosa_multiflora	Rmu_sc0001966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00029100
rosa_rugosa	Rorug05G0267200 Rorug05G0267300
rosa_samantha	Rh5AG339800 Rh5BG350200 Rh5CG376600 Rh5DG364200
rosa_wichuraiana	Rw5G032070 Rw5G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	243, 472
AccII	CGCG	2 cut(s)	16, 171
AciI	CCGC	7 cut(s)	11, 29, 144, 260, 285, 351, 444
AclWI	GGATC	3 cut(s)	66, 101, 513
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	3 cut(s)	52, 117, 456
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	502
AflIII	ACRYGT	1 cut(s)	620
AjiI	CACGTC	1 cut(s)	623
AluBI	AGCT	5 cut(s)	151, 449, 518, 576, 721
AluI	AGCT	5 cut(s)	151, 449, 518, 576, 721
Alw21I	GWGCWC	2 cut(s)	153, 723
Alw26I	GTCTC	2 cut(s)	279, 557
AlwI	GGATC	3 cut(s)	66, 101, 513
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	7 cut(s)	212, 341, 353, 440, 446, 614, 701
ApoI	RAATTY	1 cut(s)	227
AspLEI	GCGC	2 cut(s)	16, 706
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	325
AvaII	GGWCC	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	50
BanII	GRGCYC	2 cut(s)	153, 723
Bbv12I	GWGCWC	2 cut(s)	153, 723
BbvCI	CCTCAGC	1 cut(s)	519
BbvI	GCAGC	7 cut(s)	199, 328, 340, 452, 458, 626, 688
BccI	CCATC	1 cut(s)	671
BceAI	ACGGC	2 cut(s)	247, 684
BcoDI	GTCTC	2 cut(s)	279, 557
BfaI	CTAG	2 cut(s)	555, 570
BfmI	CTRYAG	1 cut(s)	601
BisI	GCNGC	9 cut(s)	12, 213, 342, 354, 441, 444, 447, 615, 702
BlsI	GCNGC	9 cut(s)	13, 214, 343, 355, 442, 445, 448, 616, 703
BmcAI	AGTACT	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	248
BmgBI	CACGTC	1 cut(s)	623
BmgT120I	GGNCC	1 cut(s)	248
BmsI	GCATC	4 cut(s)	377, 383, 582, 637
BpmI	CTGGAG	2 cut(s)	371, 473
Bpu10I	CCTNAGC	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse1I	ACTGG	1 cut(s)	41
Bse3DI	GCAATG	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	336
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMI	GCAATG	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	1 cut(s)	41
BseXI	GCAGC	7 cut(s)	199, 328, 340, 452, 458, 626, 688
BsgI	GTGCAG	1 cut(s)	633
Bsh1236I	CGCG	2 cut(s)	16, 171
Bsh1285I	CGRYCG	1 cut(s)	610
BshFI	GGCC	1 cut(s)	50
BsiEI	CGRYCG	1 cut(s)	610
BsiHKAI	GWGCWC	2 cut(s)	153, 723
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	671
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmAI	GTCTC	2 cut(s)	279, 557
BsmBI	CGTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	671
BsnI	GGCC	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	153, 723
Bsp143I	GATC	3 cut(s)	71, 106, 505
Bsp68I	TCGCGA	1 cut(s)	171
BspACI	CCGC	7 cut(s)	11, 29, 144, 260, 285, 351, 444
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	511
BspFNI	CGCG	2 cut(s)	16, 171
BspPI	GGATC	3 cut(s)	66, 101, 513
BsrDI	GCAATG	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	3 cut(s)	71, 106, 505
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	336
Bst4CI	ACNGT	4 cut(s)	248, 611, 631, 662
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	48, 690
BstDEI	CTNAG	2 cut(s)	519, 581
BstFNI	CGCG	2 cut(s)	16, 171
BstHHI	GCGC	2 cut(s)	16, 706
BstKTI	GATC	3 cut(s)	74, 109, 508
BstMAI	GTCTC	2 cut(s)	279, 557
BstMBI	GATC	3 cut(s)	71, 106, 505
BstMCI	CGRYCG	1 cut(s)	610
BstMWI	GCNNNNNNNGC	7 cut(s)	37, 350, 440, 446, 455, 689, 698
BstNSI	RCATGY	1 cut(s)	462
BstSFI	CTRYAG	1 cut(s)	601
BstUI	CGCG	2 cut(s)	16, 171
BstV1I	GCAGC	7 cut(s)	199, 328, 340, 452, 458, 626, 688
BstX2I	RGATCY	2 cut(s)	71, 505
BstYI	RGATCY	2 cut(s)	71, 505
BsuRI	GGCC	1 cut(s)	50
BtrI	CACGTC	1 cut(s)	623
BtsIMutI	CAGTG	1 cut(s)	48
BtuMI	TCGCGA	1 cut(s)	171
Cac8I	GCNNGC	2 cut(s)	48, 690
CfoI	GCGC	2 cut(s)	16, 706
Cfr13I	GGNCC	1 cut(s)	248
CseI	GACGC	2 cut(s)	91, 229
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	1 cut(s)	459
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	2 cut(s)	519, 581
DpnI	GATC	3 cut(s)	73, 108, 507
DpnII	GATC	3 cut(s)	71, 106, 505
EaeI	YGGCCR	1 cut(s)	48
Ecl136II	GAGCTC	2 cut(s)	151, 721
Eco130I	CCWWGG	1 cut(s)	336
Eco24I	GRGCYC	2 cut(s)	153, 723
Eco32I	GATATC	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	248
Eco53kI	GAGCTC	2 cut(s)	151, 721
Eco57I	CTGAAG	3 cut(s)	52, 117, 456
EcoICRI	GAGCTC	2 cut(s)	151, 721
EcoRV	GATATC	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	336
EcoT38I	GRGCYC	2 cut(s)	153, 723
ErhI	CCWWGG	1 cut(s)	336
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	1 cut(s)	462
FaiI	YATR	6 cut(s)	53, 60, 460, 493, 603, 665
FalI	AAGNNNNNCTT	2 cut(s)	480, 512
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	1 cut(s)	458
FauI	CCCGC	3 cut(s)	151, 267, 292
FblI	GTMKAC	2 cut(s)	243, 472
Fnu4HI	GCNGC	9 cut(s)	12, 213, 342, 354, 441, 444, 447, 615, 702
FriOI	GRGCYC	2 cut(s)	153, 723
Fsp4HI	GCNGC	9 cut(s)	12, 213, 342, 354, 441, 444, 447, 615, 702
FspBI	CTAG	2 cut(s)	555, 570
GlaI	GCGC	2 cut(s)	15, 705
GluI	GCNGC	9 cut(s)	12, 213, 342, 354, 441, 444, 447, 615, 702
GsuI	CTGGAG	2 cut(s)	371, 473
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	404
HgaI	GACGC	2 cut(s)	91, 229
HhaI	GCGC	2 cut(s)	16, 706
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	462
Hin6I	GCGC	2 cut(s)	14, 704
HinP1I	GCGC	2 cut(s)	14, 704
HincII	GTYRAC	2 cut(s)	244, 473
HindII	GTYRAC	2 cut(s)	244, 473
HinfI	GANTC	5 cut(s)	127, 166, 193, 206, 416
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	2 cut(s)	244, 473
Hpy188I	TCNGA	7 cut(s)	71, 88, 132, 198, 226, 310, 627
Hpy188III	TCNNGA	9 cut(s)	75, 95, 110, 170, 234, 388, 452, 555, 570
Hpy8I	GTNNAC	2 cut(s)	244, 473
Hpy99I	CGWCG	4 cut(s)	107, 245, 248, 477
HpyAV	CCTTC	5 cut(s)	92, 190, 231, 471, 725
HpyCH4III	ACNGT	4 cut(s)	248, 611, 631, 662
HpyCH4IV	ACGT	2 cut(s)	622, 710
HpyCH4V	TGCA	3 cut(s)	374, 614, 650
HpyF10VI	GCNNNNNNNGC	7 cut(s)	37, 350, 440, 446, 455, 689, 698
HpyF3I	CTNAG	2 cut(s)	519, 581
HpySE526I	ACGT	2 cut(s)	622, 710
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	462
HspAI	GCGC	2 cut(s)	14, 704
Kzo9I	GATC	3 cut(s)	71, 106, 505
LmnI	GCTCC	1 cut(s)	718
Lsp1109I	GCAGC	7 cut(s)	199, 328, 340, 452, 458, 626, 688
LweI	GCATC	4 cut(s)	377, 383, 582, 637
MaeI	CTAG	2 cut(s)	555, 570
MaeII	ACGT	2 cut(s)	622, 710
MalI	GATC	3 cut(s)	73, 108, 507
MboI	GATC	3 cut(s)	71, 106, 505
MboII	GAAGA	2 cut(s)	648, 740
MflI	RGATCY	2 cut(s)	71, 505
MhlI	GDGCHC	2 cut(s)	153, 723
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	2 cut(s)	54, 227
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	613
MnlI	CCTC	6 cut(s)	194, 261, 395, 448, 514, 708
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	2 cut(s)	294, 498
Msp20I	TGGCCA	1 cut(s)	50
MspA1I	CMGCKG	4 cut(s)	11, 31, 287, 353
MspI	CCGG	1 cut(s)	404
MvnI	CGCG	2 cut(s)	16, 171
MwoI	GCNNNNNNNGC	7 cut(s)	37, 350, 440, 446, 455, 689, 698
NdeII	GATC	3 cut(s)	71, 106, 505
NlaIII	CATG	1 cut(s)	462
NmeAIII	GCCGAG	1 cut(s)	172
NruI	TCGCGA	1 cut(s)	171
NspI	RCATGY	1 cut(s)	462
PfeI	GAWTC	4 cut(s)	127, 166, 193, 416
PkrI	GCNGC	9 cut(s)	13, 214, 343, 355, 442, 445, 448, 616, 703
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
Psp124BI	GAGCTC	2 cut(s)	153, 723
PspPI	GGNCC	1 cut(s)	248
PsuI	RGATCY	2 cut(s)	71, 505
RruI	TCGCGA	1 cut(s)	171
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SacI	GAGCTC	2 cut(s)	153, 723
SalI	GTCGAC	2 cut(s)	242, 471
SaqAI	TTAA	2 cut(s)	294, 498
SatI	GCNGC	9 cut(s)	12, 213, 342, 354, 441, 444, 447, 615, 702
Sau3AI	GATC	3 cut(s)	71, 106, 505
Sau96I	GGNCC	1 cut(s)	248
ScaI	AGTACT	1 cut(s)	65
SchI	GAGTC	1 cut(s)	200
SduI	GDGCHC	2 cut(s)	153, 723
SfaNI	GCATC	4 cut(s)	377, 383, 582, 637
SfcI	CTRYAG	1 cut(s)	601
SgrDI	CGTCGACG	1 cut(s)	242
SinI	GGWCC	1 cut(s)	248
Sse9I	AATT	2 cut(s)	54, 227
SsiI	CCGC	7 cut(s)	11, 29, 144, 260, 285, 351, 444
SspMI	CTAG	2 cut(s)	555, 570
SstI	GAGCTC	2 cut(s)	153, 723
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	4 cut(s)	248, 611, 631, 662
TaiI	ACGT	2 cut(s)	625, 713
TaqI	TCGA	5 cut(s)	105, 186, 243, 472, 723
TasI	AATT	2 cut(s)	54, 227
TatI	WGTACW	1 cut(s)	63
TauI	GCSGC	2 cut(s)	14, 446
TfiI	GAWTC	4 cut(s)	127, 166, 193, 416
Tru1I	TTAA	2 cut(s)	294, 498
Tru9I	TTAA	2 cut(s)	294, 498
TscAI	CASTG	1 cut(s)	48
TseI	GCWGC	7 cut(s)	212, 341, 353, 440, 446, 614, 701
TspDTI	ATGAA	1 cut(s)	741
TspGWI	ACGGA	2 cut(s)	94, 261
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	248
XapI	RAATTY	1 cut(s)	227
XbaI	TCTAGA	2 cut(s)	554, 569
XceI	RCATGY	1 cut(s)	462
XmiI	GTMKAC	2 cut(s)	243, 472
XspI	CTAG	2 cut(s)	555, 570
ZrmI	AGTACT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.