Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004583

Physical Location & Seq

Genomic Coordinates Reverse (-)

37558082 .. 37568810

Gene Structure 10729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3795 bp

ATGTCGCCGGCGTTGCTAGAGTCCCGAGCTCCGGCGCACCACCCTAATCTGAACACCGGTCAGATTTCTCACCCTCCTTTCTCCTTGTTCAACTTTTCTGAATATAAATTTAAGATGAACCCATCGAATGCTAGTGATGTGTCCTCTGGATTTGGGAGCTCTAGCTACGATTTTAGCTTCAATTCGTCGTCCCCTTCGCGCCAAGGCTCGGGTCTTGCGAGGCCGAGGCTTTTGAAGGTCAGAAAAGGCCTCATCAATCCGCAGTTATTGAGACCCTCAGCCGAAACCGGGGCTCCTCCTCCGGGATTTAATCCCTTTGGGACTTCGGTTTCTGGGGAATTCAGGAGTGATTCGGATTCGAATTTGAATCCGGGGATTGGAGTGGTGGACCAAATGACCAATTTGAAAATTGGGAGTGGCCGTGAGTTTGGGGATGCCAAAGATGCTGCTGGTTTTCATTTTGATACAGGAACTAGGTTCAGTTCGAGTTTGAGTGCAGCTGGGAGGTTGGATGGAGGTGGTTTTGTATTTGGAAGTGAGTTTAGCAAGAGTTCCGGTTTTGATGACGGCATTGCGTCGAAGCTTCCTGAGGATATGAGGAAGTTGAATATTGAGGGCCCTGGGAATGGTGGAGCTGTTGAGAAAGGTGAGGATCGGAGGTTTGATGGAGGTGCAAATACTAGGACCGGGTTCGGGCTGGGGAGTAATGACAATGTGGGTGGTTCATTGGTTAGAAACGTGGGATCGGAACTCCCCCACGAGTTGGAGAAGAAGTTGAACATTAACGAGAATGTGCAGATGGGCGGCAGTACTGACACGCATAATGCCGATGGTGTGAATAAGTTTGTGTTTAATACTAGGAAGAAGGATGACTATTCCTCTGCTGGAAGCTCGGTGAATGCACTTCCAGATAAGATGAAGAATCTGAACATAGGTCTTAGTTTTGATGGAGGAAAAGAGAGTCTTCTGTTGAGAAAGATGGAGACTTTGGATATAGGAACTCAGGCTGGACACTCTACTCAATCAGATACAGGGACATCTTCCCGCCAAACATCTGTGAAGAACATGGAAACTGAGAGGGAGGATGAATTTAATTTTACAAGCAAACAAGATCATTTGAGCACATCTTCTGTAGAGTTTAAAACACCAAACACTAAAGCCAACTTGTTTTCGGGCATAAACAAGAAATTGGAATTCAATGCTAAGCGGGAACCAGCAAGGGCTAGGCCCGCTAGGGATACAAGAATGAAAAAAGCAAGTGGAAAATTAAGACGTCCTACTTCATCCCAGCTGGGGCTTGGGCATGATGTTGTTTCAAAAGGTGGTTCTCCAGTAAACGTTGAGGCTTTTGAATCCTATTCGCCAATGGACATTTCTCCTTATCAAGAAACATTGGCTGATAACCAATATTCGAAAGAAAATTCTGCATCTTCTGAGTCATTTAGTCTCGTCAACGATTATCCGGAAACCGATTCAGTTCCGAAAGTTTCAAATAGTTCTATTGATGAAGATCTTGCTATGGCAACAGAATGTCTGGATATAAATAAAGTTGATGCAGTGAGCAGACCTCCACAAGAGGAAGCTTTTGAGCACCATTTAGGGGGAAGTGTTAATGCTGATGAACCTGTTGAAGGATCTGTTTCTGGGGCTGAAACCGAAAGCTTTAAGTCTGCAACTGACGAGGTAGACTATATCAGTGACACCGCTAATTCAGCGGAGACTGAAGTTAGTTCAAGCCCAAATATGGAGAAACATGATACTGATGGCAGGATACACTTTGGCTTTCATGCAACTTCATCGAATAGAAGTGGATTAAACTTCACGTTTGCTGCCTCTACTGCTGCTCAATGTCCATTATCACCATCAAAACGCTTGCACAAAAAGAAAAATATGGTAAAGGCTGGTCAAGATGCCAATAGTTTTGTTCCAAATGCTAAGGTTCCATATGGATCATCCTCTGCAGAGTTTTTGCCATATTCTGGAGCTCCAGTACGTTCGACTCCAGGACACTATCAGGAAATAAACCCTCCAATTTCAGTTATTTCACAATGCAATGAAGATAATTCTGGGGTGCAGAAGGAAAAGGAGATCAAACAAGAGGCTGTCTCTTTGTCTGCTGAAACAGCTGCAGCTCAGGAAGCATGTGAGAAGTGGCGACTAAGGGGTAACCAAGCATATTCTAATGGGGATCTATCTAAAGCCGAGGACTGCTATACCCAAGGGGTAAATGGTGTTTCTGAAAATGAGACATCTACAAGTTGTCTCAGGGCACTGATGCTGTGCTATAGCAACCGTGCAGCAACACGCATGTCTCTTGGAAGAATTCGAGATGCACTTGGAGATTGTATGATGGCTGCTGCAATAGATCCTAACTTCCTCAAAGTGCAAGTTAGAGCTGCCAACTGTTATCTTACCCTTGGGGAGGTTCAAGATGCTTCACAACATTTTAGTAGGTGCCTCCAATTGGCAAGTGATGTCTGTGTCGACCAAAAGATTGCAGTAGAAGCCTCTGATGGGTTACAAAAGGCGCAGAAAGTGTCTGAATGTCTGAATCTCTGTGCTGAGCTTATGCAAAGGAAGACATCTACCAATGCAGAGAGTGCTTTGGAACTTATTGCTGAGGCTTTGGCAATTAGCCCTAGCACAGAAAAATTATTTGAAATGAAAGCAGAGGCTCTTTTCACGATGCGGAGGTATGATGAGGTGATTGAGCTTTGTGAGAAGACCCTTGGTTATGCTGAAAAGAACTCCCCTTTAGTAGATACCGCCATTTCTTTAGATGGATCTGAACTCTCAAAGTACTTGCACTTCAGACTTTGGCGGTGTCGTTTGACTTTTAAATCCTATTTCCATCTAGGAAAACTTGAGGAGGGCCTTGCTTCACTAGAGAAACAAGAGGAAAAGGTTTCTACCACGTATAGAACATCCAGGAATTGGAGAAAAACTCTGGAATCATCTATTCCCCTTGTTCGCATTGTTCGTGAGCTGTTATCTTGTAAGGTTGCAGGGAATGAAGCATTTCAGGCTGGGAGGCATACTGAAGCTGTTGAACGTTATACTACTGCTTTGTCATGTAATGCGGAATCTCGTCCTTTCACAGCTGTTTGTTTTTGCAATCGTGCTGCTGCATACAAAGCGCTGGGTCAGATTACTGATGCTATTGCAGATTGCAGCCTAGCTATAGCTCTTGATGGAAGTTATCTAAAGGCTATTTCTAGGCGAGCTACATTATATGAGATGATCAGAGATTATGGACAAGCAGCTAAAGATCTTCATAGACTTGTATCTCTTCTCACTAAGCAGTTAGAGGAAAATATCAATCAATGTGGAACCTCTGATATATCCAATAGCTGCAAAAGTGATTTGAAACAAGTTCGTCTTCGTCTTTCAGAAATAGAAGAAGAAGCCAGAAAGGACATCCCCTTGGATATGTACATTATCCTTGGAATCAAACCATCTATTTCAGCATCAGAAATTAAGAAGGCCTATCGGAAAGCTGCACTCAGACATCATCCTGACAAGGCTGTACAATTCTTTGCTAGGAGTGAAACTGGTGATGATGGGCTTTGGAAGGAGATAGCAGAAGAAGCGCACAAGGATGCTGACAGGCTTTTCAAAATGATTGGGGAGGCATATGCAGTACTTTCAGACTCTACCAAGCGTGCACGGTATGATGCTGAAGAGGAGACTAGGAATGCGCAGAAGAAACGCACTGGAAGCAGTGCAGCTAGAATGCCTGCAGAATCTCAAAATTACCCATTTGAAAGAAGTGGAAGTAGCCGACAATGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006457 GO:0006458 GO:0008047 GO:0008150 GO:0009987 GO:0030234 GO:0031072 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0051084 GO:0051085 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0061077 GO:0065007 GO:0065009 GO:0070013 GO:0080134 GO:0080135 GO:0098772 GO:1900034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ TPR_8

Protein Analysis

1264

Amino Acids

137.99

Weight (kDa)

6.0

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	1143 - 1225	1.4e-15	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12430
fragaria_vesca	FvH4_3g28360 FvH4_3g28360 FvH4_3g28360 FvH4_3g28360
malus_domestica	MD03G1171100.v1.1 MD03G1171300.v1.1 MD11G1188500.v1.1 MD11G1188700.v1.1
prunus_persica	Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1
pyrus_communis	pycom03g12820 pycom03g12830 pycom03g12840 pycom03g12860 pycom11g16530 pycom15g27190
rosa_chinensis	RchiOBHm_Chr5g0053371
rosa_laevigata	RLG00000034766
rosa_multiflora	Rmu_sc0001966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00029100
rosa_rugosa	Rorug05G0267200 Rorug05G0267300
rosa_samantha	Rh5AG339800 Rh5BG350200 Rh5CG376600 Rh5DG364200
rosa_wichuraiana	Rw5G032070 Rw5G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1276
Acc16I	TGCGCA	1 cut(s)	3699
AccB1I	GGYRCC	1 cut(s)	2454
AccB7I	CCANNNNNTGG	3 cut(s)	763, 1979, 2934
AccI	GTMKAC	2 cut(s)	1686, 2484
AccII	CGCG	1 cut(s)	199
AccIII	TCCGGA	1 cut(s)	1462
AclI	AACGTT	2 cut(s)	1338, 3052
AclWI	GGATC	7 cut(s)	660, 751, 1642, 1957, 2196, 2360, 2791
AcoI	YGGCCR	1 cut(s)	418
AcsI	RAATTY	7 cut(s)	107, 338, 361, 1088, 1193, 1420, 2322
AcuI	CTGAAG	4 cut(s)	1743, 2794, 3060, 3699
AcyI	GRCGYC	1 cut(s)	1273
AfaI	GTAC	6 cut(s)	811, 1992, 2801, 3434, 3528, 3642
AfeI	AGCGCT	1 cut(s)	3138
AgeI	ACCGGT	1 cut(s)	56
AjnI	CCWGG	3 cut(s)	619, 2002, 2927
AjuI	GAANNNNNNNTTGG	2 cut(s)	1357, 1389
Alw21I	GWGCWC	6 cut(s)	31, 161, 1124, 1593, 1987, 3667
Alw26I	GTCTC	9 cut(s)	265, 977, 1451, 1712, 2110, 2240, 2267, 2316, 3680
Alw44I	GTGCAC	1 cut(s)	3663
AlwI	GGATC	7 cut(s)	660, 751, 1642, 1957, 2196, 2360, 2791
Ama87I	CYCGRG	2 cut(s)	24, 208
Aor13HI	TCCGGA	1 cut(s)	1462
Aor51HI	AGCGCT	1 cut(s)	3138
AoxI	GGCC	7 cut(s)	221, 247, 418, 616, 1226, 2872, 3483
ApaI	GGGCCC	1 cut(s)	620
ApaLI	GTGCAC	1 cut(s)	3663
ApoI	RAATTY	7 cut(s)	107, 338, 361, 1088, 1193, 1420, 2322
AsiGI	ACCGGT	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	3018
AspLEI	GCGC	6 cut(s)	37, 201, 2530, 3139, 3592, 3700
AspS9I	GGNCC	6 cut(s)	388, 616, 617, 684, 1227, 2872
AsuC2I	CCSGG	4 cut(s)	289, 303, 372, 688
AsuHPI	GGTGA	6 cut(s)	62, 659, 907, 1851, 2716, 3566
AsuII	TTCGAA	2 cut(s)	359, 1412
AvaI	CYCGRG	2 cut(s)	24, 208
AvaII	GGWCC	2 cut(s)	388, 684
AxyI	CCTNAGG	1 cut(s)	588
BaeGI	GKGCMC	3 cut(s)	620, 2272, 3667
BanI	GGYRCC	1 cut(s)	2454
BanII	GRGCYC	5 cut(s)	31, 161, 295, 620, 1987
BarI	GAAGNNNNNNTAC	2 cut(s)	2792, 2824
BauI	CACGAG	1 cut(s)	758
BbsI	GAAGAC	4 cut(s)	956, 2585, 2729, 3371
Bbv12I	GWGCWC	6 cut(s)	31, 161, 1124, 1593, 1987, 3667
BbvCI	CCTCAGC	2 cut(s)	277, 2619
BceAI	ACGGC	2 cut(s)	405, 583
BcgI	CGANNNNNNTGC	2 cut(s)	1779, 1813
BciT130I	CCWGG	3 cut(s)	621, 2004, 2929
BciVI	GTATCC	2 cut(s)	1231, 1764
BclI	TGATCA	1 cut(s)	3240
BcnI	CCSGG	4 cut(s)	289, 303, 372, 688
BcoDI	GTCTC	9 cut(s)	265, 977, 1451, 1712, 2110, 2240, 2267, 2316, 3680
BfmI	CTRYAG	6 cut(s)	1131, 1959, 2127, 2284, 3180, 3738
BfoI	RGCGCY	1 cut(s)	3140
BfuI	GTATCC	2 cut(s)	1231, 1764
BglII	AGATCT	2 cut(s)	1510, 3268
BlpI	GCTNAGC	2 cut(s)	1203, 2562
BmcAI	AGTACT	3 cut(s)	811, 2801, 3642
Bme1390I	CCNGG	7 cut(s)	289, 303, 372, 621, 688, 2004, 2929
Bme18I	GGWCC	2 cut(s)	388, 684
BmeT110I	CYCGRG	2 cut(s)	24, 208
BmgT120I	GGNCC	6 cut(s)	388, 616, 617, 684, 1227, 2872
BmiI	GGNNCC	6 cut(s)	294, 618, 1212, 1941, 2456, 3331
BmrFI	CCNGG	7 cut(s)	289, 303, 372, 621, 688, 2004, 2929
BpiI	GAAGAC	4 cut(s)	956, 2585, 2729, 3371
BplI	GAGNNNNNCTC	6 cut(s)	1552, 1584, 2090, 2122, 2929, 2961
BpmI	CTGGAG	4 cut(s)	1314, 1971, 1986, 2001
Bpu10I	CCTNAGC	4 cut(s)	277, 1935, 2133, 2619
Bpu1102I	GCTNAGC	2 cut(s)	1203, 2562
Bpu14I	TTCGAA	2 cut(s)	359, 1412
BpuEI	CTTGAG	1 cut(s)	2885
BpuMI	CCSGG	4 cut(s)	289, 303, 372, 688
BsaAI	YACGTR	1 cut(s)	2916
BsaBI	GATNNNNATC	1 cut(s)	1509
BsaHI	GRCGYC	1 cut(s)	1273
BsaI	GGTCTC	1 cut(s)	265
BsaWI	WCCGGW	3 cut(s)	56, 554, 1462
BsaXI	ACNNNNNCTCC	8 cut(s)	277, 307, 406, 436, 758, 788, 1974, 2004
Bse118I	RCCGGY	2 cut(s)	7, 56
Bse1I	ACTGG	4 cut(s)	1331, 1988, 3556, 3718
Bse21I	CCTNAGG	1 cut(s)	588
Bse3DI	GCAATG	2 cut(s)	570, 2059
Bse8I	GATNNNNATC	1 cut(s)	1509
BseAI	TCCGGA	1 cut(s)	1462
BseBI	CCWGG	3 cut(s)	621, 2004, 2929
BseJI	GATNNNNATC	1 cut(s)	1509
BseMI	GCAATG	2 cut(s)	570, 2059
BseNI	ACTGG	4 cut(s)	1331, 1988, 3556, 3718
BseRI	GAGGAG	4 cut(s)	285, 288, 2882, 3698
BseSI	GKGCMC	3 cut(s)	620, 2272, 3667
BseYI	CCCAGC	6 cut(s)	500, 697, 1287, 1291, 3026, 3139
BsgI	GTGCAG	6 cut(s)	516, 815, 2093, 2316, 3483, 3744
Bsh1236I	CGCG	1 cut(s)	199
BshFI	GGCC	7 cut(s)	223, 249, 420, 618, 1228, 2874, 3485
BshNI	GGYRCC	1 cut(s)	2454
BshTI	ACCGGT	1 cut(s)	56
BsiHKAI	GWGCWC	6 cut(s)	31, 161, 1124, 1593, 1987, 3667
BsiHKCI	CYCGRG	2 cut(s)	24, 208
BsiSI	CCGG	9 cut(s)	8, 32, 57, 288, 302, 371, 555, 687, 1463
BslFI	GGGAC	4 cut(s)	7, 175, 334, 1048
BsmAI	GTCTC	9 cut(s)	265, 977, 1451, 1712, 2110, 2240, 2267, 2316, 3680
BsmFI	GGGAC	4 cut(s)	7, 175, 334, 1048
BsmI	GAATGC	4 cut(s)	133, 904, 3700, 3738
BsnI	GGCC	7 cut(s)	223, 249, 420, 618, 1228, 2874, 3485
Bso31I	GGTCTC	1 cut(s)	265
BsoBI	CYCGRG	2 cut(s)	24, 208
Bsp119I	TTCGAA	2 cut(s)	359, 1412
Bsp120I	GGGCCC	1 cut(s)	616
Bsp1286I	GDGCHC	9 cut(s)	31, 161, 295, 620, 1124, 1593, 1987, 2272, 3667
Bsp13I	TCCGGA	1 cut(s)	1462
Bsp1407I	TGTACA	2 cut(s)	3432, 3526
Bsp1720I	GCTNAGC	2 cut(s)	1203, 2562
BspANI	GGCC	7 cut(s)	223, 249, 420, 618, 1228, 2874, 3485
BspEI	TCCGGA	1 cut(s)	1462
BspFNI	CGCG	1 cut(s)	199
BspLI	GGNNCC	6 cut(s)	294, 618, 1212, 1941, 2456, 3331
BspMAI	CTGCAG	3 cut(s)	1963, 2131, 3742
BspPI	GGATC	7 cut(s)	660, 751, 1642, 1957, 2196, 2360, 2791
BspT104I	TTCGAA	2 cut(s)	359, 1412
BspT107I	GGYRCC	1 cut(s)	2454
BspTNI	GGTCTC	1 cut(s)	265
BsrDI	GCAATG	2 cut(s)	570, 2059
BsrFI	RCCGGY	2 cut(s)	7, 56
BsrGI	TGTACA	2 cut(s)	3432, 3526
BsrI	ACTGG	4 cut(s)	1331, 1988, 3556, 3718
BssAI	RCCGGY	2 cut(s)	7, 56
BssNI	GRCGYC	1 cut(s)	1273
BssSI	CACGAG	1 cut(s)	758
BssT1I	CCWWGG	6 cut(s)	202, 2218, 2416, 2728, 3423, 3442
Bst2BI	CACGAG	1 cut(s)	758
Bst2UI	CCWGG	3 cut(s)	621, 2004, 2929
Bst4CI	ACNGT	3 cut(s)	2294, 2405, 3669
Bst6I	CTCTTC	2 cut(s)	3294, 3675
BstACI	GRCGYC	1 cut(s)	1273
BstAPI	GCANNNNNTGC	1 cut(s)	2600
BstAUI	TGTACA	2 cut(s)	3432, 3526
BstBAI	YACGTR	1 cut(s)	2916
BstBI	TTCGAA	2 cut(s)	359, 1412
BstC8I	GCNNGC	6 cut(s)	9, 1230, 1874, 3222, 3663, 3738
BstEII	GGTNACC	1 cut(s)	2165
BstENI	CCTNNNNNAGG	2 cut(s)	1629, 2420
BstFNI	CGCG	1 cut(s)	199
BstH2I	RGCGCY	1 cut(s)	3140
BstHHI	GCGC	6 cut(s)	37, 201, 2530, 3139, 3592, 3700
BstMAI	GTCTC	9 cut(s)	265, 977, 1451, 1712, 2110, 2240, 2267, 2316, 3680
BstNI	CCWGG	3 cut(s)	621, 2004, 2929
BstNSI	RCATGY	2 cut(s)	2145, 2311
BstPI	GGTNACC	1 cut(s)	2165
BstSCI	CCNGG	7 cut(s)	287, 301, 370, 619, 686, 2002, 2927
BstSFI	CTRYAG	6 cut(s)	1131, 1959, 2127, 2284, 3180, 3738
BstSLI	GKGCMC	3 cut(s)	620, 2272, 3667
BstUI	CGCG	1 cut(s)	199
BstV2I	GAAGAC	4 cut(s)	956, 2585, 2729, 3371
BstX2I	RGATCY	6 cut(s)	1510, 1634, 2188, 2365, 2783, 3268
BstYI	RGATCY	6 cut(s)	1510, 1634, 2188, 2365, 2783, 3268
Bsu36I	CCTNAGG	1 cut(s)	588
BsuI	GTATCC	2 cut(s)	1231, 1764
BsuRI	GGCC	7 cut(s)	223, 249, 420, 618, 1228, 2874, 3485
BtsI	GCAGTG	2 cut(s)	1563, 3727
BtsIMutI	CAGTG	5 cut(s)	1563, 1702, 2270, 3711, 3727
Cac8I	GCNNGC	6 cut(s)	9, 1230, 1874, 3222, 3663, 3738
CfoI	GCGC	6 cut(s)	37, 201, 2530, 3139, 3592, 3700
Cfr10I	RCCGGY	2 cut(s)	7, 56
Cfr13I	GGNCC	6 cut(s)	388, 616, 617, 684, 1227, 2872
CseI	GACGC	1 cut(s)	564
Csp6I	GTAC	6 cut(s)	810, 1991, 2800, 3433, 3527, 3641
CspAI	ACCGGT	1 cut(s)	56
CspCI	CAANNNNNGTGG	4 cut(s)	700, 735, 3307, 3342
CviAII	CATG	7 cut(s)	1066, 1304, 1754, 1787, 2142, 2308, 3072
CviQI	GTAC	6 cut(s)	810, 1991, 2800, 3433, 3527, 3641
DraI	TTTAAA	2 cut(s)	1141, 2839
EaeI	YGGCCR	1 cut(s)	418
Eam1104I	CTCTTC	2 cut(s)	3294, 3675
EarI	CTCTTC	2 cut(s)	3294, 3675
Ecl136II	GAGCTC	3 cut(s)	29, 159, 1985
Eco130I	CCWWGG	6 cut(s)	202, 2218, 2416, 2728, 3423, 3442
Eco147I	AGGCCT	2 cut(s)	249, 3485
Eco24I	GRGCYC	5 cut(s)	31, 161, 295, 620, 1987
Eco31I	GGTCTC	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	388, 684
Eco47III	AGCGCT	1 cut(s)	3138
Eco53kI	GAGCTC	3 cut(s)	29, 159, 1985
Eco57I	CTGAAG	4 cut(s)	1743, 2794, 3060, 3699
Eco81I	CCTNAGG	1 cut(s)	588
Eco88I	CYCGRG	2 cut(s)	24, 208
Eco91I	GGTNACC	1 cut(s)	2165
EcoICRI	GAGCTC	3 cut(s)	29, 159, 1985
EcoNI	CCTNNNNNAGG	2 cut(s)	1629, 2420
EcoO109I	RGGNCCY	3 cut(s)	616, 617, 2872
EcoO65I	GGTNACC	1 cut(s)	2165
EcoRI	GAATTC	3 cut(s)	338, 1193, 2322
EcoRII	CCWGG	3 cut(s)	619, 2002, 2927
EcoT14I	CCWWGG	6 cut(s)	202, 2218, 2416, 2728, 3423, 3442
EcoT38I	GRGCYC	5 cut(s)	31, 161, 295, 620, 1987
ErhI	CCWWGG	6 cut(s)	202, 2218, 2416, 2728, 3423, 3442
FaeI	CATG	7 cut(s)	1069, 1307, 1757, 1790, 2145, 2311, 3075
FalI	AAGNNNNNCTT	4 cut(s)	948, 980, 3363, 3395
FaqI	GGGAC	4 cut(s)	7, 175, 334, 1048
FatI	CATG	7 cut(s)	1065, 1303, 1753, 1786, 2141, 2307, 3071
FauI	CCCGC	3 cut(s)	1052, 1200, 1237
FauNDI	CATATG	2 cut(s)	1945, 3634
FbaI	TGATCA	1 cut(s)	3240
FblI	GTMKAC	2 cut(s)	1686, 2484
FriOI	GRGCYC	5 cut(s)	31, 161, 295, 620, 1987
FspI	TGCGCA	1 cut(s)	3699
GlaI	GCGC	6 cut(s)	36, 200, 2529, 3138, 3591, 3699
GsaI	CCCAGC	6 cut(s)	504, 701, 1291, 1295, 3030, 3143
GsuI	CTGGAG	4 cut(s)	1314, 1971, 1986, 2001
HaeII	RGCGCY	1 cut(s)	3140
HaeIII	GGCC	7 cut(s)	223, 249, 420, 618, 1228, 2874, 3485
HapII	CCGG	9 cut(s)	8, 32, 57, 288, 302, 371, 555, 687, 1463
HgaI	GACGC	1 cut(s)	564
HhaI	GCGC	6 cut(s)	37, 201, 2530, 3139, 3592, 3700
Hin1I	GRCGYC	1 cut(s)	1273
Hin1II	CATG	7 cut(s)	1069, 1307, 1757, 1790, 2145, 2311, 3075
Hin6I	GCGC	6 cut(s)	35, 199, 2528, 3137, 3590, 3698
HinP1I	GCGC	6 cut(s)	35, 199, 2528, 3137, 3590, 3698
HincII	GTYRAC	2 cut(s)	1453, 2485
HindII	GTYRAC	2 cut(s)	1453, 2485
HindIII	AAGCTT	3 cut(s)	581, 1581, 1660
HpaII	CCGG	9 cut(s)	8, 32, 57, 288, 302, 371, 555, 687, 1463
HphI	GGTGA	6 cut(s)	62, 659, 907, 1851, 2716, 3566
Hpy166II	GTNNAC	6 cut(s)	388, 1336, 1453, 1687, 2485, 3665
Hpy8I	GTNNAC	6 cut(s)	388, 1336, 1453, 1687, 2485, 3665
Hpy99I	CGWCG	2 cut(s)	190, 580
HpyAV	CCTTC	7 cut(s)	204, 229, 859, 1625, 2071, 3475, 3565
HpyCH4III	ACNGT	3 cut(s)	2294, 2405, 3669
HpyCH4IV	ACGT	7 cut(s)	738, 1273, 1338, 1823, 1993, 2915, 3052
HpySE526I	ACGT	7 cut(s)	738, 1273, 1338, 1823, 1993, 2915, 3052
Hsp92I	GRCGYC	1 cut(s)	1273
Hsp92II	CATG	7 cut(s)	1069, 1307, 1757, 1790, 2145, 2311, 3075
HspAI	GCGC	6 cut(s)	35, 199, 2528, 3137, 3590, 3698
Kpn2I	TCCGGA	1 cut(s)	1462
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	3240
LmnI	GCTCC	6 cut(s)	34, 156, 298, 632, 1982, 1990
MaeII	ACGT	7 cut(s)	738, 1273, 1338, 1823, 1993, 2915, 3052
MaeIII	GTNAC	3 cut(s)	1697, 2165, 2517
MfeI	CAATTG	1 cut(s)	2462
MflI	RGATCY	6 cut(s)	1510, 1634, 2188, 2365, 2783, 3268
MhlI	GDGCHC	9 cut(s)	31, 161, 295, 620, 1124, 1593, 1987, 2272, 3667
MlyI	GAGTC	5 cut(s)	29, 970, 1445, 1993, 3644
MmeI	TCCRAC	2 cut(s)	489, 744
MreI	CGCCGGCG	1 cut(s)	7
MroI	TCCGGA	1 cut(s)	1462
MroNI	GCCGGC	1 cut(s)	7
MroXI	GAANNNNTTC	1 cut(s)	3018
MslI	CAYNNNNRTG	1 cut(s)	3597
MspA1I	CMGCKG	5 cut(s)	500, 1291, 1715, 2126, 3101
MspI	CCGG	9 cut(s)	8, 32, 57, 288, 302, 371, 555, 687, 1463
MspR9I	CCNGG	7 cut(s)	289, 303, 372, 621, 688, 2004, 2929
MunI	CAATTG	1 cut(s)	2462
Mva1269I	GAATGC	4 cut(s)	133, 904, 3700, 3738
MvaI	CCWGG	3 cut(s)	621, 2004, 2929
MvnI	CGCG	1 cut(s)	199
NaeI	GCCGGC	1 cut(s)	9
NciI	CCSGG	4 cut(s)	289, 303, 372, 688
NdeI	CATATG	2 cut(s)	1945, 3634
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	7 cut(s)	1069, 1307, 1757, 1790, 2145, 2311, 3075
NlaIV	GGNNCC	6 cut(s)	294, 618, 1212, 1941, 2456, 3331
NmeAIII	GCCGAG	2 cut(s)	249, 2227
NmuCI	GTSAC	1 cut(s)	1697
NsbI	TGCGCA	1 cut(s)	3699
NspI	RCATGY	2 cut(s)	2145, 2311
NspV	TTCGAA	2 cut(s)	359, 1412
PasI	CCCWGGG	1 cut(s)	620
PceI	AGGCCT	2 cut(s)	249, 3485
PcsI	WCGNNNNNNNCGW	2 cut(s)	215, 2977
PctI	GAATGC	4 cut(s)	133, 904, 3700, 3738
PdiI	GCCGGC	1 cut(s)	9
PdmI	GAANNNNTTC	1 cut(s)	3018
PflMI	CCANNNNNTGG	3 cut(s)	763, 1979, 2934
PfoI	TCCNGGA	3 cut(s)	301, 2002, 2927
PinAI	ACCGGT	1 cut(s)	56
PleI	GAGTC	5 cut(s)	28, 969, 1444, 1993, 3644
PpsI	GAGTC	5 cut(s)	28, 969, 1444, 1993, 3644
Ppu21I	YACGTR	1 cut(s)	2916
Psp124BI	GAGCTC	3 cut(s)	31, 161, 1987
Psp1406I	AACGTT	2 cut(s)	1338, 3052
Psp6I	CCWGG	3 cut(s)	619, 2002, 2927
PspEI	GGTNACC	1 cut(s)	2165
PspFI	CCCAGC	6 cut(s)	500, 697, 1287, 1291, 3026, 3139
PspGI	CCWGG	3 cut(s)	619, 2002, 2927
PspN4I	GGNNCC	6 cut(s)	294, 618, 1212, 1941, 2456, 3331
PspOMI	GGGCCC	1 cut(s)	616
PspPI	GGNCC	6 cut(s)	388, 616, 617, 684, 1227, 2872
PstI	CTGCAG	3 cut(s)	1963, 2131, 3742
PsuI	RGATCY	6 cut(s)	1510, 1634, 2188, 2365, 2783, 3268
PvuII	CAGCTG	4 cut(s)	500, 1291, 2126, 3101
RsaI	GTAC	6 cut(s)	811, 1992, 2801, 3434, 3528, 3642
RsaNI	GTAC	6 cut(s)	810, 1991, 2800, 3433, 3527, 3641
RseI	CAYNNNNRTG	1 cut(s)	3597
SacI	GAGCTC	3 cut(s)	31, 161, 1987
SalI	GTCGAC	1 cut(s)	2483
Sau96I	GGNCC	6 cut(s)	388, 616, 617, 684, 1227, 2872
ScaI	AGTACT	3 cut(s)	811, 2801, 3642
SchI	GAGTC	5 cut(s)	29, 970, 1445, 1993, 3644
ScrFI	CCNGG	7 cut(s)	289, 303, 372, 621, 688, 2004, 2929
SduI	GDGCHC	9 cut(s)	31, 161, 295, 620, 1124, 1593, 1987, 2272, 3667
SfcI	CTRYAG	6 cut(s)	1131, 1959, 2127, 2284, 3180, 3738
SfuI	TTCGAA	2 cut(s)	359, 1412
SgrAI	CRCCGGYG	1 cut(s)	7
SinI	GGWCC	2 cut(s)	388, 684
SmiMI	CAYNNNNRTG	1 cut(s)	3597
SmlI	CTYRAG	1 cut(s)	2864
SmoI	CTYRAG	1 cut(s)	2864
SseBI	AGGCCT	2 cut(s)	249, 3485
SspI	AATATT	2 cut(s)	610, 1409
SstI	GAGCTC	3 cut(s)	31, 161, 1987
StuI	AGGCCT	2 cut(s)	249, 3485
StyD4I	CCNGG	7 cut(s)	287, 301, 370, 619, 686, 2002, 2927
StyI	CCWWGG	6 cut(s)	202, 2218, 2416, 2728, 3423, 3442
TaaI	ACNGT	3 cut(s)	2294, 2405, 3669
TaiI	ACGT	7 cut(s)	741, 1276, 1341, 1826, 1996, 2918, 3055
TaqI	TCGA	9 cut(s)	125, 359, 485, 578, 1412, 1799, 1997, 2326, 2484
TatI	WGTACW	5 cut(s)	809, 2799, 3432, 3526, 3640
TauI	GCSGC	1 cut(s)	807
TscAI	CASTG	5 cut(s)	1563, 1702, 2277, 3718, 3727
TseFI	GTSAC	1 cut(s)	1697
Tsp45I	GTSAC	1 cut(s)	1697
TspRI	CASTG	5 cut(s)	1563, 1702, 2277, 3718, 3727
Van91I	CCANNNNNTGG	3 cut(s)	763, 1979, 2934
VneI	GTGCAC	1 cut(s)	3663
VpaK11BI	GGWCC	2 cut(s)	388, 684
XagI	CCTNNNNNAGG	2 cut(s)	1629, 2420
XapI	RAATTY	7 cut(s)	107, 338, 361, 1088, 1193, 1420, 2322
XceI	RCATGY	2 cut(s)	2145, 2311
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1295, 2225
XmiI	GTMKAC	2 cut(s)	1686, 2484
XmnI	GAANNNNTTC	1 cut(s)	3018
ZraI	GACGTC	1 cut(s)	1274
ZrmI	AGTACT	3 cut(s)	811, 2801, 3642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.