Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004583

Physical Location & Seq

Genomic Coordinates Forward (+)

18152043 .. 18152762

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g16530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAGGAATTTGAAAATTGGGAGCGGCAATGAGTTTTTGAATACCAAAGTGGGTGCTTTCACTTTTAATGCAAGAAGTTTGAATTCAGCTCCGGGATTGGATAAAGGTGGTTTCGTTTTTGGAAACGGTAATAAGAAGAACTCTAGTATTGATGAAAGCATTGTGTCAAAGCTTCCCAAGGATATGAGGAAATTGAACATTGAAGGTGCTGAGAAGCGTGAATCTGTTGAGGCAGGTAAGGATCAAAAGTTTAATTTCAATGCTAATGATAAGACCAAGTTTGGTTCGGGTAGTATCGACAATGTGGGTGGTTCTTTGGGCCAAAACGTGGAACCAGAACTACCAAATGAGTTGAAGAAGAGGTTGAACATTAAAGAGACTGTGCAGCTGGATCGAAGTACTGACAGGCCTTCTGCCGATGATGTGAATAAGTTTGCCTTTGGAAATAGTAAAAACAATAGTTATTCATTAGCCGGAACCTCAGAAAATGTACTTCCAGATAAGATGAAGAATCTGAACATAAAGGATACTTTTGATGGAAGAAAAGGTGCTCTTCTGTCATTTAATCTACTTAACAACAATTTGGTCACTTGTTCAGTAGAAGTGGGTCTAACTTCTCCTCTGCTGCCTCTTCTGCTGCTCAAAGTCAAGTATCTGCATCAAAACGCCTCCAGAAAAAGAAAATTCTGGAAAAAGCGGGTCAAGAGACCAATACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006457 GO:0006458 GO:0008047 GO:0008150 GO:0009987 GO:0030234 GO:0031072 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0051084 GO:0051085 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0061077 GO:0065007 GO:0065009 GO:0070013 GO:0080134 GO:0080135 GO:0098772 GO:1900034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ TPR_8

Protein Analysis

240

Amino Acids

26.42

Weight (kDa)

9.92

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12430
fragaria_vesca	FvH4_3g28360 FvH4_3g28360 FvH4_3g28360 FvH4_3g28360
malus_domestica	MD03G1171100.v1.1 MD03G1171300.v1.1 MD11G1188500.v1.1 MD11G1188700.v1.1
prunus_persica	Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1
pyrus_communis	pycom03g12820 pycom03g12830 pycom03g12840 pycom03g12860 pycom11g16530 pycom15g27190
rosa_chinensis	RchiOBHm_Chr5g0053371
rosa_laevigata	RLG00000034766
rosa_multiflora	Rmu_sc0001966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00029100
rosa_rugosa	Rorug05G0267200 Rorug05G0267300
rosa_samantha	Rh5AG339800 Rh5BG350200 Rh5CG376600 Rh5DG364200
rosa_wichuraiana	Rw5G032070 Rw5G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	224
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccBSI	CCGCTC	1 cut(s)	24
AciI	CCGC	2 cut(s)	24, 697
AclWI	GGATC	2 cut(s)	249, 399
AcsI	RAATTY	3 cut(s)	7, 82, 683
AfaI	GTAC	2 cut(s)	400, 492
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	8 cut(s)	13, 40, 82, 196, 203, 259, 355, 367
AluBI	AGCT	3 cut(s)	89, 172, 388
AluI	AGCT	3 cut(s)	89, 172, 388
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	2 cut(s)	371, 700
AlwI	GGATC	2 cut(s)	249, 399
AoxI	GGCC	2 cut(s)	319, 407
ApeKI	GCWGC	3 cut(s)	385, 625, 637
ApoI	RAATTY	3 cut(s)	7, 82, 683
AspS9I	GGNCC	1 cut(s)	319
AsuC2I	CCSGG	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	3 cut(s)	397, 612, 624
BccI	CCATC	1 cut(s)	530
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BciVI	GTATCC	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	2 cut(s)	371, 700
BfaI	CTAG	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	716
BfuAI	ACCTGC	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	4 cut(s)	25, 386, 626, 638
BlsI	GCNGC	4 cut(s)	26, 387, 627, 639
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	2 cut(s)	333, 478
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	667
BpmI	CTGGAG	1 cut(s)	655
BpuMI	CCSGG	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	700
BsaJI	CCNNGG	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	2 cut(s)	201, 495
BseRI	GAGGAG	1 cut(s)	609
BseXI	GCAGC	3 cut(s)	397, 612, 624
BsgI	GTGCAG	1 cut(s)	404
BshFI	GGCC	2 cut(s)	321, 409
BsiHKAI	GWGCWC	1 cut(s)	553
BsiSI	CCGG	2 cut(s)	92, 474
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	2 cut(s)	371, 700
BsnI	GGCC	2 cut(s)	321, 409
Bso31I	GGTCTC	1 cut(s)	700
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp143I	GATC	2 cut(s)	241, 391
BspACI	CCGC	2 cut(s)	24, 697
BspANI	GGCC	2 cut(s)	321, 409
BspCNI	CTCAG	2 cut(s)	202, 494
BspLI	GGNNCC	2 cut(s)	333, 478
BspMI	ACCTGC	1 cut(s)	224
BspPI	GGATC	2 cut(s)	249, 399
BspQI	GCTCTTC	1 cut(s)	558
BspTNI	GGTCTC	1 cut(s)	700
BsrBI	CCGCTC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	2 cut(s)	241, 391
BssT1I	CCWWGG	1 cut(s)	177
Bst4CI	ACNGT	3 cut(s)	128, 382, 717
Bst6I	CTCTTC	3 cut(s)	353, 558, 636
BstDEI	CTNAG	2 cut(s)	210, 481
BstKTI	GATC	2 cut(s)	244, 394
BstMAI	GTCTC	2 cut(s)	371, 700
BstMBI	GATC	2 cut(s)	241, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	634
BstSCI	CCNGG	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	716
BstV1I	GCAGC	3 cut(s)	397, 612, 624
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	321, 409
BveI	ACCTGC	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	319
Csp6I	GTAC	2 cut(s)	399, 491
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviJI	RGCY	6 cut(s)	89, 172, 321, 388, 409, 473
CviKI_1	RGCY	6 cut(s)	89, 172, 321, 388, 409, 473
CviQI	GTAC	2 cut(s)	399, 491
DdeI	CTNAG	2 cut(s)	210, 481
DpnI	GATC	2 cut(s)	243, 393
DpnII	GATC	2 cut(s)	241, 391
Eam1104I	CTCTTC	3 cut(s)	353, 558, 636
EarI	CTCTTC	3 cut(s)	353, 558, 636
Eco130I	CCWWGG	1 cut(s)	177
Eco147I	AGGCCT	1 cut(s)	409
Eco31I	GGTCTC	1 cut(s)	700
EcoRI	GAATTC	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaiI	YATR	2 cut(s)	185, 521
FalI	AAGNNNNNCTT	4 cut(s)	422, 454, 537, 569
FauI	CCCGC	1 cut(s)	690
Fnu4HI	GCNGC	4 cut(s)	25, 386, 626, 638
Fsp4HI	GCNGC	4 cut(s)	25, 386, 626, 638
FspBI	CTAG	1 cut(s)	144
GluI	GCNGC	4 cut(s)	25, 386, 626, 638
GsuI	CTGGAG	1 cut(s)	655
HaeIII	GGCC	2 cut(s)	321, 409
HapII	CCGG	2 cut(s)	92, 474
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	2 cut(s)	221, 511
HpaII	CCGG	2 cut(s)	92, 474
Hpy188I	TCNGA	2 cut(s)	484, 516
Hpy188III	TCNNGA	4 cut(s)	497, 672, 688, 703
HpyAV	CCTTC	2 cut(s)	197, 420
HpyCH4III	ACNGT	3 cut(s)	128, 382, 717
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	3 cut(s)	71, 385, 658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	634
HpyF3I	CTNAG	2 cut(s)	210, 481
HpySE526I	ACGT	1 cut(s)	327
Kzo9I	GATC	2 cut(s)	241, 391
LguI	GCTCTTC	1 cut(s)	558
LmnI	GCTCC	2 cut(s)	21, 94
LpnPI	CCDG	9 cut(s)	105, 219, 348, 374, 391, 487, 510, 673, 685
Lsp1109I	GCAGC	3 cut(s)	397, 612, 624
LweI	GCATC	1 cut(s)	667
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	2 cut(s)	243, 393
MbiI	CCGCTC	1 cut(s)	24
MboI	GATC	2 cut(s)	241, 391
MboII	GAAGA	7 cut(s)	148, 367, 370, 520, 545, 552, 623
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	7 cut(s)	7, 15, 82, 191, 253, 580, 683
MnlI	CCTC	7 cut(s)	180, 223, 354, 490, 630, 639, 679
MseI	TTAA	5 cut(s)	66, 252, 372, 564, 573
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	2 cut(s)	92, 474
MspR9I	CCNGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	634
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	2 cut(s)	241, 391
NlaIV	GGNNCC	2 cut(s)	333, 478
NmuCI	GTSAC	1 cut(s)	586
PceI	AGGCCT	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	558
PfeI	GAWTC	2 cut(s)	221, 511
PflMI	CCANNNNNTGG	1 cut(s)	328
PfoI	TCCNGGA	1 cut(s)	91
PkrI	GCNGC	4 cut(s)	26, 387, 627, 639
PspN4I	GGNNCC	2 cut(s)	333, 478
PspPI	GGNCC	1 cut(s)	319
PsrI	GAACNNNNNNTAC	2 cut(s)	324, 356
PvuII	CAGCTG	1 cut(s)	388
RsaI	GTAC	2 cut(s)	400, 492
RsaNI	GTAC	2 cut(s)	399, 491
SapI	GCTCTTC	1 cut(s)	558
SaqAI	TTAA	5 cut(s)	66, 252, 372, 564, 573
SatI	GCNGC	4 cut(s)	25, 386, 626, 638
Sau3AI	GATC	2 cut(s)	241, 391
Sau96I	GGNCC	1 cut(s)	319
ScaI	AGTACT	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	553
SfaNI	GCATC	1 cut(s)	667
SfcI	CTRYAG	1 cut(s)	716
Sse9I	AATT	7 cut(s)	7, 15, 82, 191, 253, 580, 683
SseBI	AGGCCT	1 cut(s)	409
SsiI	CCGC	2 cut(s)	24, 697
SspMI	CTAG	1 cut(s)	144
StuI	AGGCCT	1 cut(s)	409
StyD4I	CCNGG	1 cut(s)	91
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	128, 382, 717
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	2 cut(s)	297, 394
TasI	AATT	7 cut(s)	7, 15, 82, 191, 253, 580, 683
TatI	WGTACW	2 cut(s)	398, 490
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	221, 511
Tru1I	TTAA	5 cut(s)	66, 252, 372, 564, 573
Tru9I	TTAA	5 cut(s)	66, 252, 372, 564, 573
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	3 cut(s)	385, 625, 637
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	3 cut(s)	168, 456, 521
Van91I	CCANNNNNTGG	1 cut(s)	328
XapI	RAATTY	3 cut(s)	7, 82, 683
XspI	CTAG	1 cut(s)	144
ZrmI	AGTACT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.