Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004583

Physical Location & Seq

Genomic Coordinates Forward (+)

53901529 .. 53910962

Gene Structure 9434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G032080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3786 bp

ATGTCGCCGGCGTTGCTAGAGTCCCGAGCTCCGGCGCACCACCCTAATCTGAACACCGGTCAGATTTCTCACCCTCCTTTCTCCTTGTTCAACTTTTCTGAATATAAATTTAAGATGAACCCATCGAATGCTAGTGATGTGTCCTCTGGATTTGGGAACTCTAGTCACGATTTTAGCTTCAATTCGTCGTCCCCTTCGCGCCAAGGCTCGGGTCTTGCGAGGCCGAGGCTTTTGAAGGTCAGGAAAGGCCTCATCAATCCGCAGTTATTGAGACCCTCGGCCGAAACCGGGGCTCCTCCTCCGGGATTTAATCCCTTTGGGAATTCCGTTTCTGGGGAATTCAGGAGTGATTCCGATTCGAATTTGAATCCGGGGATAGGAGTGGCTGACCAAATGAGCAATTTGAAAATAATTGGGAGTGGCAGTGAGTTTGGGGATGCCAAAGATGCTGCTGGTTTTCATTTTGATACAGGAACTAGGTTGAGTTCGAGTTCGACTTCAGCTGGGAGGTTGGATGGAGGTGGTTTTGTATTTGGAAGTGAGTTTTTCAAGAGTTCTGGTTTTGATTACGGCATTGCGTCGAAGCTTCCTGAGGATATGAGCAAGTTGAATATTGAGGGCCCTGGGAATGGTGGAGCTGTTGAGAAAGGTGAGGATCGGAGGTTTGATGGAGGTGCAAATACCTTAACCGGGTTTGGGCTGGGGAGTAATGACAATGTGGGTGGTTCATTGGGTAGAAACGTGGGATCGGAACTCCCCCACGAATTGGAGAAGAAGTTGAACATTAACGAGAATGTGCAGATGGGCGGCAGGACTGACACGCATTATGCCACTGGTGTGAATAAGTTTGTGTTTAATACTAGTAAGAAGGATGACTATTCCTCTGCTGGAAGCTCGGTGAATGTACTTCCAGATAAGATGAAGAATCTGAACATAGGTCTTAGTTTTGATGGAAGAAAAGAGAGTCTTCTGTTGAGAAAGATGGAGACTTTGGATATAGGAACTAAGGCTGGACACTCTACTCAATCGGATACAGGGACATCTTCCCGCCAAACATCTGTGAAGAACATGGAAACTGAGAGGGAGGATGAATTTAATTTTACAAGCAAACAAGATCATTTGAGCACATCTTCCGTAGAGTTTAAAACACCAAACACTAAAGCCAATTTGCCCGCTAGGGATACAAGAATGAAAAAAGCAAGTGGAAAATTAAGACGTCCTACTTCATCCCAGCTGGGGCTTGGGCATGATGTTGTTTCAAAAGGTGGTTCTCCAGTAAACGTTGAGGCTTTTGAATCCTATTCGCCAATGGACATTTCTCCTTATCAAGAAACATTGGCTGATCACCAATATTCGAAAGAAAATTCTGCATCTTCCGAGTCATTTAGTCTCGTCAACGATTATCCGGAAACCGATTCAGTTCCAAAAGTTACAAATAATTCTATTGATGAAGATCTTGCTATGGCAACAGAATGTCTGGATATAAATAAAGTTGATGCAGTGAGCAGACCTCCACAAGAGGAAGCTTTTGAGCACCATTTAGGTGGAAGTGTTAATGCTGATGAACCTGTTGAAGGATCTGTTTCTGGGGCTGAAACCGAAAGCTTTAAGTCTGCAACTGACGAGGTAGACTATATCAGTGACACCGCTAATTCAGCGGAGACTGAAGTTAGTTCAAGCCCAAATATGGAGAGACATGATACTGATGGCAGGATACACTTTGGCTTTCATGCAAGTTCATTGAATAGAAGTGGATTAAACTTCACGTTTGCTGCCTCTACTGCTGCTCAATGTCCATTATCACCATCAAAACGTTTGCACAAAAAGAAAAATATGGTAAAGGCTGGTCAAGATGCCAATAGTTTTGTTCCAAATGCAAAGGTTCCATATGGATCATCCTCTGCAGAGTTTTTGCCATATTCTGGAGCTCCAGTACGTTCAACTCCAGGACACTATCAGGAAATAAACCCTCCAATTTCAGTTATTTCACAATGCAATGAAGATAATTCTGGGGTGCAGAAGGAAAAGGAGATCAAACAAGAGGCTGTCTCTTTGTCTGCTGAAACAGCTGCAGCTCAGGAAGCATGTGAGAAGTGGCGACTAAGGGGTAACCAAGCATATTCTAATGGGGATCTATCTAAAGCCGAGGACTGCTATACCCAAGGGGTAAATGGTGTTTCTGAAAATGAGACATCTACAAGCTGTCTCAGGGCACTGATGCTGTGCTATAGCAACCGTGCAGCAACACGCATGTCTCTTGGAAGAATTCGAGATGCACTTGGAGATTGTATGATGGCTGCTGCAATAGATCCTAACTTCCTCAAAGTGCAAGTTAGAGCTGCCAACTGTTATCTTACCCTTGGGGAGGTTCAAGATGCTTCAAAACGTTTTAGTAGGTGCCTCCAATTGGCAAGTGATGTCTCTGTCGACCAAAAGATTGCAGTAGAAGCCTCTGATGGGTTACAAAAGGCGCAGAAAGTGTCTGAATGTCTGAATCTCTGTGCTGAGCTTATGCAAAGGAAGACATCTACCAATGCAGAGAGTGCTTTGGAACTTATTGCTGAGGCTTTGGCAATTAGCCCTAGCTCAGAAAAATTATTTGAAATGAAAGCAGAGGCTCTTTTCACGATGCGGAGGTATGATGAGGTGATTGAGCTTTGTGAGAAGACCCTTGGTTATGCTGAAAAGAACTCCCCTTTAGTAGATACCGCCATTTCTTTAGATGGATCTGAACTCTCAAAGTACTTGCACTTCAGACTTTGGCGGTGTCGTTTGACTTTTAAATCCTATTTCCATCTAGGAAAACTTGAGGAGGGCCTTGCTTCACTAGAGAAACAAGAGGAAAAGTTTTCTACCACGTATAGGAATTGGAGAAAAACTCTGGAATCATCTATTCCCCTTGTTCACATTGTTCGTGAGCTGTTATCTTATAAGTGTAATATATTTAATTTGGTATCCATTTTATTGATTTTGTATGCATTTTGCATTATAGTTGCAGGAAATGAAGCATTTCAGGCTGGGAGGCATACTGAAGCTGTTGAACGTTATACTACTGCTTTGTCATGTAATGCGGAATCTCGTCCTTTCACAGCTGTTTGTTTTTGCAATCGTGCTGCTGCATACAAAGCGCTGGGTCAGATTACTGACGCTATTGCAGATTGCAGCCTAGCTATAGCTCTTGATGGAAGTTATCTAAAGGCTATTTCTAGGCGAGCTACATTATATGAGATGATCAGAGATTATGGACAAGCAGCTAAAGATCTTCATAGACTAGTATCTCTTCTCACTAAGCAGTTAGAGGAAAATATCAATCAATGTGGAACCTCTGATATATCCAATAGCTGCAAAAGTGATTTGAAACAAGCTCGTCTTCGTCTTTCAGAAATAGAAGAAGAAGGCAGAAAGGACATCCCCTTGGATATGTACATTATTCTTGGAATCAAACCATCTATTTCAGCATCAGAAATTAAGAAGGCCTATCGGAAAGCTGCACTCAGACATCATCCTGACAAGGCTGTACAATTCTTTGCTAGGAGTGAAACTGGTGATGATGGGCTTTGGAAGGAGATAGCAGAAGAAGCGCACAAGGATGCTGACAGGCTTTTCAAAATGATTGGGGAGGCATATGCAGTACTTTCAGACTCTACCAAGCGTGCACGGTATGATGCTGAAGAGGAGACTAGGAATGCGCAGAAGAAACGCACTGGAAGCAGTGCAGCTAGAATGCCTGCAGATGCTCAAAATTACCCATTTGAAAGAAGCGGAAGTAGCCGACAATGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006457 GO:0006458 GO:0008047 GO:0008150 GO:0009987 GO:0030234 GO:0031072 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0051084 GO:0051085 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0061077 GO:0065007 GO:0065009 GO:0070013 GO:0080134 GO:0080135 GO:0098772 GO:1900034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ TPR_8

Protein Analysis

1261

Amino Acids

137.71

Weight (kDa)

5.91

Isoelectric Point (pI)

46.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	1140 - 1222	1.4e-15	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12430
fragaria_vesca	FvH4_3g28360 FvH4_3g28360 FvH4_3g28360 FvH4_3g28360
malus_domestica	MD03G1171100.v1.1 MD03G1171300.v1.1 MD11G1188500.v1.1 MD11G1188700.v1.1
prunus_persica	Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1
pyrus_communis	pycom03g12820 pycom03g12830 pycom03g12840 pycom03g12860 pycom11g16530 pycom15g27190
rosa_chinensis	RchiOBHm_Chr5g0053371
rosa_laevigata	RLG00000034766
rosa_multiflora	Rmu_sc0001966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00029100
rosa_rugosa	Rorug05G0267200 Rorug05G0267300
rosa_samantha	Rh5AG339800 Rh5BG350200 Rh5CG376600 Rh5DG364200
rosa_wichuraiana	Rw5G032070 Rw5G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2931
AatII	GACGTC	1 cut(s)	1219
Acc16I	TGCGCA	1 cut(s)	3690
AccB1I	GGYRCC	1 cut(s)	2397
AccB7I	CCANNNNNTGG	2 cut(s)	766, 1922
AccI	GTMKAC	2 cut(s)	1629, 2427
AccII	CGCG	1 cut(s)	199
AccIII	TCCGGA	1 cut(s)	1405
AclI	AACGTT	4 cut(s)	1281, 1813, 2386, 3043
AclWI	GGATC	7 cut(s)	663, 754, 1585, 1900, 2139, 2303, 2734
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	7 cut(s)	107, 322, 338, 361, 1091, 1363, 2265
AcuI	CTGAAG	5 cut(s)	483, 1686, 2737, 3051, 3690
AcyI	GRCGYC	1 cut(s)	1216
AfaI	GTAC	6 cut(s)	906, 1935, 2744, 3425, 3519, 3633
AfeI	AGCGCT	1 cut(s)	3129
AgeI	ACCGGT	1 cut(s)	56
AhlI	ACTAGT	2 cut(s)	860, 3271
AjnI	CCWGG	2 cut(s)	622, 1945
AjuI	GAANNNNNNNTTGG	2 cut(s)	1300, 1332
AleI	CACNNNNGTG	1 cut(s)	836
Alw21I	GWGCWC	5 cut(s)	31, 1127, 1536, 1930, 3658
Alw44I	GTGCAC	1 cut(s)	3654
AlwI	GGATC	7 cut(s)	663, 754, 1585, 1900, 2139, 2303, 2734
Ama87I	CYCGRG	2 cut(s)	24, 208
Aor13HI	TCCGGA	1 cut(s)	1405
Aor51HI	AGCGCT	1 cut(s)	3129
AoxI	GGCC	6 cut(s)	221, 247, 279, 619, 2815, 3474
ApaI	GGGCCC	1 cut(s)	623
ApaLI	GTGCAC	1 cut(s)	3654
ApoI	RAATTY	7 cut(s)	107, 322, 338, 361, 1091, 1363, 2265
AsiGI	ACCGGT	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	3009
AspLEI	GCGC	6 cut(s)	37, 201, 2473, 3130, 3583, 3691
AspS9I	GGNCC	3 cut(s)	619, 620, 2815
AsuC2I	CCSGG	4 cut(s)	289, 303, 372, 691
AsuHPI	GGTGA	7 cut(s)	62, 662, 910, 1337, 1794, 2659, 3557
AsuII	TTCGAA	2 cut(s)	359, 1355
AvaI	CYCGRG	2 cut(s)	24, 208
AxyI	CCTNAGG	1 cut(s)	591
BaeGI	GKGCMC	3 cut(s)	623, 2215, 3658
BanI	GGYRCC	1 cut(s)	2397
BanII	GRGCYC	4 cut(s)	31, 295, 623, 1930
BarI	GAAGNNNNNNTAC	2 cut(s)	2735, 2767
BbsI	GAAGAC	4 cut(s)	959, 2528, 2672, 3362
Bbv12I	GWGCWC	5 cut(s)	31, 1127, 1536, 1930, 3658
BbvCI	CCTCAGC	1 cut(s)	2562
BceAI	ACGGC	1 cut(s)	586
BciT130I	CCWGG	2 cut(s)	624, 1947
BciVI	GTATCC	4 cut(s)	1024, 1174, 1707, 2965
BclI	TGATCA	2 cut(s)	1342, 3231
BcnI	CCSGG	4 cut(s)	289, 303, 372, 691
BcuI	ACTAGT	2 cut(s)	860, 3271
BfmI	CTRYAG	5 cut(s)	1902, 2070, 2227, 3171, 3729
BfoI	RGCGCY	1 cut(s)	3131
BfuI	GTATCC	4 cut(s)	1024, 1174, 1707, 2965
BglII	AGATCT	2 cut(s)	1453, 3259
BlpI	GCTNAGC	1 cut(s)	2505
BmcAI	AGTACT	2 cut(s)	2744, 3633
Bme1390I	CCNGG	6 cut(s)	289, 303, 372, 624, 691, 1947
BmeT110I	CYCGRG	2 cut(s)	24, 208
BmgT120I	GGNCC	3 cut(s)	619, 620, 2815
BmiI	GGNNCC	5 cut(s)	294, 621, 1884, 2399, 3322
BmrFI	CCNGG	6 cut(s)	289, 303, 372, 624, 691, 1947
BpiI	GAAGAC	4 cut(s)	959, 2528, 2672, 3362
BplI	GAGNNNNNCTC	6 cut(s)	1495, 1527, 2033, 2065, 2863, 2895
BpmI	CTGGAG	4 cut(s)	1257, 1914, 1929, 1944
Bpu10I	CCTNAGC	2 cut(s)	2076, 2562
Bpu1102I	GCTNAGC	1 cut(s)	2505
Bpu14I	TTCGAA	2 cut(s)	359, 1355
BpuEI	CTTGAG	1 cut(s)	2828
BpuMI	CCSGG	4 cut(s)	289, 303, 372, 691
BsaAI	YACGTR	1 cut(s)	2859
BsaBI	GATNNNNATC	1 cut(s)	1452
BsaHI	GRCGYC	1 cut(s)	1216
BsaI	GGTCTC	1 cut(s)	265
BsaWI	WCCGGW	2 cut(s)	56, 1405
BsaXI	ACNNNNNCTCC	8 cut(s)	277, 307, 409, 439, 761, 791, 1917, 1947
Bse118I	RCCGGY	2 cut(s)	7, 56
Bse1I	ACTGG	5 cut(s)	838, 1274, 1931, 3547, 3709
Bse21I	CCTNAGG	1 cut(s)	591
Bse3DI	GCAATG	2 cut(s)	573, 2002
Bse8I	GATNNNNATC	1 cut(s)	1452
BseAI	TCCGGA	1 cut(s)	1405
BseBI	CCWGG	2 cut(s)	624, 1947
BseGI	GGATG	9 cut(s)	442, 520, 877, 1093, 1226, 1895, 3408, 3502, 3595
BseJI	GATNNNNATC	1 cut(s)	1452
BseMI	GCAATG	2 cut(s)	573, 2002
BseMII	CTCAG	8 cut(s)	582, 1068, 2090, 2221, 2496, 2553, 2601, 3508
BseNI	ACTGG	5 cut(s)	838, 1274, 1931, 3547, 3709
BseRI	GAGGAG	4 cut(s)	285, 288, 2825, 3689
BseSI	GKGCMC	3 cut(s)	623, 2215, 3658
BseX3I	CGGCCG	1 cut(s)	279
BseYI	CCCAGC	6 cut(s)	503, 700, 1230, 1234, 3017, 3130
BsgI	GTGCAG	5 cut(s)	818, 2036, 2259, 3474, 3735
Bsh1236I	CGCG	1 cut(s)	199
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	6 cut(s)	223, 249, 281, 621, 2817, 3476
BshNI	GGYRCC	1 cut(s)	2397
BshTI	ACCGGT	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	5 cut(s)	31, 1127, 1536, 1930, 3658
BsiHKCI	CYCGRG	2 cut(s)	24, 208
BsiSI	CCGG	8 cut(s)	8, 32, 57, 288, 302, 371, 690, 1406
BslFI	GGGAC	3 cut(s)	7, 175, 1051
BsmFI	GGGAC	3 cut(s)	7, 175, 1051
BsmI	GAATGC	3 cut(s)	133, 3691, 3729
BsnI	GGCC	6 cut(s)	223, 249, 281, 621, 2817, 3476
Bso31I	GGTCTC	1 cut(s)	265
BsoBI	CYCGRG	2 cut(s)	24, 208
Bsp119I	TTCGAA	2 cut(s)	359, 1355
Bsp120I	GGGCCC	1 cut(s)	619
Bsp1286I	GDGCHC	8 cut(s)	31, 295, 623, 1127, 1536, 1930, 2215, 3658
Bsp13I	TCCGGA	1 cut(s)	1405
Bsp1407I	TGTACA	2 cut(s)	3423, 3517
Bsp1720I	GCTNAGC	1 cut(s)	2505
BspANI	GGCC	6 cut(s)	223, 249, 281, 621, 2817, 3476
BspCNI	CTCAG	8 cut(s)	583, 1069, 2089, 2220, 2497, 2554, 2600, 3507
BspEI	TCCGGA	1 cut(s)	1405
BspFNI	CGCG	1 cut(s)	199
BspLI	GGNNCC	5 cut(s)	294, 621, 1884, 2399, 3322
BspMAI	CTGCAG	3 cut(s)	1906, 2074, 3733
BspPI	GGATC	7 cut(s)	663, 754, 1585, 1900, 2139, 2303, 2734
BspT104I	TTCGAA	2 cut(s)	359, 1355
BspT107I	GGYRCC	1 cut(s)	2397
BspTNI	GGTCTC	1 cut(s)	265
BsrDI	GCAATG	2 cut(s)	573, 2002
BsrFI	RCCGGY	2 cut(s)	7, 56
BsrGI	TGTACA	2 cut(s)	3423, 3517
BsrI	ACTGG	5 cut(s)	838, 1274, 1931, 3547, 3709
BssAI	RCCGGY	2 cut(s)	7, 56
BssNI	GRCGYC	1 cut(s)	1216
BssT1I	CCWWGG	5 cut(s)	202, 2161, 2359, 2671, 3414
Bst2UI	CCWGG	2 cut(s)	624, 1947
Bst4CI	ACNGT	3 cut(s)	2237, 2348, 3660
Bst6I	CTCTTC	2 cut(s)	3285, 3666
BstACI	GRCGYC	1 cut(s)	1216
BstAPI	GCANNNNNTGC	1 cut(s)	2543
BstAUI	TGTACA	2 cut(s)	3423, 3517
BstBAI	YACGTR	1 cut(s)	2859
BstBI	TTCGAA	2 cut(s)	359, 1355
BstC8I	GCNNGC	5 cut(s)	9, 1173, 3213, 3654, 3729
BstEII	GGTNACC	1 cut(s)	2108
BstENI	CCTNNNNNAGG	2 cut(s)	1572, 2363
BstF5I	GGATG	9 cut(s)	442, 520, 877, 1093, 1226, 1895, 3408, 3502, 3595
BstFNI	CGCG	1 cut(s)	199
BstH2I	RGCGCY	1 cut(s)	3131
BstHHI	GCGC	6 cut(s)	37, 201, 2473, 3130, 3583, 3691
BstMCI	CGRYCG	1 cut(s)	282
BstNI	CCWGG	2 cut(s)	624, 1947
BstNSI	RCATGY	2 cut(s)	2088, 2254
BstPI	GGTNACC	1 cut(s)	2108
BstSCI	CCNGG	6 cut(s)	287, 301, 370, 622, 689, 1945
BstSFI	CTRYAG	5 cut(s)	1902, 2070, 2227, 3171, 3729
BstSLI	GKGCMC	3 cut(s)	623, 2215, 3658
BstUI	CGCG	1 cut(s)	199
BstV2I	GAAGAC	4 cut(s)	959, 2528, 2672, 3362
BstX2I	RGATCY	6 cut(s)	1453, 1577, 2131, 2308, 2726, 3259
BstXI	CCANNNNNNTGG	1 cut(s)	1544
BstYI	RGATCY	6 cut(s)	1453, 1577, 2131, 2308, 2726, 3259
BstZI	CGGCCG	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	591
BsuI	GTATCC	4 cut(s)	1024, 1174, 1707, 2965
BsuRI	GGCC	6 cut(s)	223, 249, 281, 621, 2817, 3476
BtsCI	GGATG	9 cut(s)	442, 520, 877, 1093, 1226, 1895, 3408, 3502, 3595
BtsI	GCAGTG	3 cut(s)	430, 1506, 3718
BtsIMutI	CAGTG	7 cut(s)	430, 831, 1506, 1645, 2213, 3702, 3718
Cac8I	GCNNGC	5 cut(s)	9, 1173, 3213, 3654, 3729
CfoI	GCGC	6 cut(s)	37, 201, 2473, 3130, 3583, 3691
Cfr10I	RCCGGY	2 cut(s)	7, 56
Cfr13I	GGNCC	3 cut(s)	619, 620, 2815
CseI	GACGC	2 cut(s)	567, 3155
Csp6I	GTAC	6 cut(s)	905, 1934, 2743, 3424, 3518, 3632
CspAI	ACCGGT	1 cut(s)	56
CspCI	CAANNNNNGTGG	4 cut(s)	703, 738, 3298, 3333
CviAII	CATG	7 cut(s)	1069, 1247, 1697, 1730, 2085, 2251, 3063
CviQI	GTAC	6 cut(s)	905, 1934, 2743, 3424, 3518, 3632
DraI	TTTAAA	2 cut(s)	1144, 2782
EaeI	YGGCCR	1 cut(s)	279
EagI	CGGCCG	1 cut(s)	279
Eam1104I	CTCTTC	2 cut(s)	3285, 3666
EarI	CTCTTC	2 cut(s)	3285, 3666
Ecl136II	GAGCTC	2 cut(s)	29, 1928
EclXI	CGGCCG	1 cut(s)	279
Eco130I	CCWWGG	5 cut(s)	202, 2161, 2359, 2671, 3414
Eco147I	AGGCCT	2 cut(s)	249, 3476
Eco24I	GRGCYC	4 cut(s)	31, 295, 623, 1930
Eco31I	GGTCTC	1 cut(s)	265
Eco47III	AGCGCT	1 cut(s)	3129
Eco52I	CGGCCG	1 cut(s)	279
Eco53kI	GAGCTC	2 cut(s)	29, 1928
Eco57I	CTGAAG	5 cut(s)	483, 1686, 2737, 3051, 3690
Eco81I	CCTNAGG	1 cut(s)	591
Eco88I	CYCGRG	2 cut(s)	24, 208
Eco91I	GGTNACC	1 cut(s)	2108
EcoICRI	GAGCTC	2 cut(s)	29, 1928
EcoNI	CCTNNNNNAGG	2 cut(s)	1572, 2363
EcoO109I	RGGNCCY	3 cut(s)	619, 620, 2815
EcoO65I	GGTNACC	1 cut(s)	2108
EcoRI	GAATTC	3 cut(s)	322, 338, 2265
EcoRII	CCWGG	2 cut(s)	622, 1945
EcoT14I	CCWWGG	5 cut(s)	202, 2161, 2359, 2671, 3414
EcoT22I	ATGCAT	1 cut(s)	2980
EcoT38I	GRGCYC	4 cut(s)	31, 295, 623, 1930
ErhI	CCWWGG	5 cut(s)	202, 2161, 2359, 2671, 3414
FaeI	CATG	7 cut(s)	1072, 1250, 1700, 1733, 2088, 2254, 3066
FalI	AAGNNNNNCTT	4 cut(s)	951, 983, 3354, 3386
FaqI	GGGAC	3 cut(s)	7, 175, 1051
FatI	CATG	7 cut(s)	1068, 1246, 1696, 1729, 2084, 2250, 3062
FauI	CCCGC	2 cut(s)	1055, 1180
FauNDI	CATATG	2 cut(s)	1888, 3625
FbaI	TGATCA	2 cut(s)	1342, 3231
FblI	GTMKAC	2 cut(s)	1629, 2427
FokI	GGATG	9 cut(s)	449, 527, 884, 1100, 1213, 1882, 3395, 3489, 3602
FriOI	GRGCYC	4 cut(s)	31, 295, 623, 1930
FspI	TGCGCA	1 cut(s)	3690
GlaI	GCGC	6 cut(s)	36, 200, 2472, 3129, 3582, 3690
GsaI	CCCAGC	6 cut(s)	507, 704, 1234, 1238, 3021, 3134
GsuI	CTGGAG	4 cut(s)	1257, 1914, 1929, 1944
HaeII	RGCGCY	1 cut(s)	3131
HaeIII	GGCC	6 cut(s)	223, 249, 281, 621, 2817, 3476
HapII	CCGG	8 cut(s)	8, 32, 57, 288, 302, 371, 690, 1406
HgaI	GACGC	2 cut(s)	567, 3155
HhaI	GCGC	6 cut(s)	37, 201, 2473, 3130, 3583, 3691
Hin1I	GRCGYC	1 cut(s)	1216
Hin1II	CATG	7 cut(s)	1072, 1250, 1700, 1733, 2088, 2254, 3066
Hin6I	GCGC	6 cut(s)	35, 199, 2471, 3128, 3581, 3689
HinP1I	GCGC	6 cut(s)	35, 199, 2471, 3128, 3581, 3689
HincII	GTYRAC	2 cut(s)	1396, 2428
HindII	GTYRAC	2 cut(s)	1396, 2428
HindIII	AAGCTT	3 cut(s)	584, 1524, 1603
HpaII	CCGG	8 cut(s)	8, 32, 57, 288, 302, 371, 690, 1406
HphI	GGTGA	7 cut(s)	62, 662, 910, 1337, 1794, 2659, 3557
Hpy166II	GTNNAC	6 cut(s)	1279, 1396, 1630, 2428, 2905, 3656
Hpy8I	GTNNAC	6 cut(s)	1279, 1396, 1630, 2428, 2905, 3656
Hpy99I	CGWCG	2 cut(s)	190, 583
HpyAV	CCTTC	8 cut(s)	204, 229, 862, 1568, 2014, 3389, 3466, 3556
HpyCH4III	ACNGT	3 cut(s)	2237, 2348, 3660
HpyCH4IV	ACGT	9 cut(s)	741, 1216, 1281, 1766, 1813, 1936, 2386, 2858, 3043
HpySE526I	ACGT	9 cut(s)	741, 1216, 1281, 1766, 1813, 1936, 2386, 2858, 3043
Hsp92I	GRCGYC	1 cut(s)	1216
Hsp92II	CATG	7 cut(s)	1072, 1250, 1700, 1733, 2088, 2254, 3066
HspAI	GCGC	6 cut(s)	35, 199, 2471, 3128, 3581, 3689
Kpn2I	TCCGGA	1 cut(s)	1405
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Ksp22I	TGATCA	2 cut(s)	1342, 3231
LmnI	GCTCC	5 cut(s)	34, 298, 635, 1925, 1933
MaeII	ACGT	9 cut(s)	741, 1216, 1281, 1766, 1813, 1936, 2386, 2858, 3043
MaeIII	GTNAC	5 cut(s)	164, 1429, 1640, 2108, 2460
MfeI	CAATTG	1 cut(s)	2405
MflI	RGATCY	6 cut(s)	1453, 1577, 2131, 2308, 2726, 3259
MhlI	GDGCHC	8 cut(s)	31, 295, 623, 1127, 1536, 1930, 2215, 3658
MlyI	GAGTC	4 cut(s)	29, 973, 1388, 3635
MmeI	TCCRAC	1 cut(s)	492
Mph1103I	ATGCAT	1 cut(s)	2980
MreI	CGCCGGCG	1 cut(s)	7
MroI	TCCGGA	1 cut(s)	1405
MroNI	GCCGGC	1 cut(s)	7
MroXI	GAANNNNTTC	1 cut(s)	3009
MslI	CAYNNNNRTG	3 cut(s)	836, 1542, 3588
MspA1I	CMGCKG	5 cut(s)	503, 1234, 1658, 2069, 3092
MspI	CCGG	8 cut(s)	8, 32, 57, 288, 302, 371, 690, 1406
MspR9I	CCNGG	6 cut(s)	289, 303, 372, 624, 691, 1947
MunI	CAATTG	1 cut(s)	2405
Mva1269I	GAATGC	3 cut(s)	133, 3691, 3729
MvaI	CCWGG	2 cut(s)	624, 1947
MvnI	CGCG	1 cut(s)	199
NaeI	GCCGGC	1 cut(s)	9
NciI	CCSGG	4 cut(s)	289, 303, 372, 691
NdeI	CATATG	2 cut(s)	1888, 3625
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	7 cut(s)	1072, 1250, 1700, 1733, 2088, 2254, 3066
NlaIV	GGNNCC	5 cut(s)	294, 621, 1884, 2399, 3322
NmeAIII	GCCGAG	3 cut(s)	249, 257, 2170
NmuCI	GTSAC	2 cut(s)	164, 1640
NsbI	TGCGCA	1 cut(s)	3690
NsiI	ATGCAT	1 cut(s)	2980
NspI	RCATGY	2 cut(s)	2088, 2254
NspV	TTCGAA	2 cut(s)	359, 1355
OliI	CACNNNNGTG	1 cut(s)	836
PasI	CCCWGGG	1 cut(s)	623
PceI	AGGCCT	2 cut(s)	249, 3476
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PctI	GAATGC	3 cut(s)	133, 3691, 3729
PdiI	GCCGGC	1 cut(s)	9
PdmI	GAANNNNTTC	1 cut(s)	3009
PflMI	CCANNNNNTGG	2 cut(s)	766, 1922
PfoI	TCCNGGA	2 cut(s)	301, 1945
PinAI	ACCGGT	1 cut(s)	56
PleI	GAGTC	4 cut(s)	28, 972, 1387, 3635
PpsI	GAGTC	4 cut(s)	28, 972, 1387, 3635
Ppu21I	YACGTR	1 cut(s)	2859
PsiI	TTATAA	1 cut(s)	2931
Psp124BI	GAGCTC	2 cut(s)	31, 1930
Psp1406I	AACGTT	4 cut(s)	1281, 1813, 2386, 3043
Psp6I	CCWGG	2 cut(s)	622, 1945
PspEI	GGTNACC	1 cut(s)	2108
PspFI	CCCAGC	6 cut(s)	503, 700, 1230, 1234, 3017, 3130
PspGI	CCWGG	2 cut(s)	622, 1945
PspN4I	GGNNCC	5 cut(s)	294, 621, 1884, 2399, 3322
PspOMI	GGGCCC	1 cut(s)	619
PspPI	GGNCC	3 cut(s)	619, 620, 2815
PstI	CTGCAG	3 cut(s)	1906, 2074, 3733
PsuI	RGATCY	6 cut(s)	1453, 1577, 2131, 2308, 2726, 3259
PvuII	CAGCTG	4 cut(s)	503, 1234, 2069, 3092
RsaI	GTAC	6 cut(s)	906, 1935, 2744, 3425, 3519, 3633
RsaNI	GTAC	6 cut(s)	905, 1934, 2743, 3424, 3518, 3632
RseI	CAYNNNNRTG	3 cut(s)	836, 1542, 3588
SacI	GAGCTC	2 cut(s)	31, 1930
SalI	GTCGAC	1 cut(s)	2426
Sau96I	GGNCC	3 cut(s)	619, 620, 2815
ScaI	AGTACT	2 cut(s)	2744, 3633
SchI	GAGTC	4 cut(s)	29, 973, 1388, 3635
ScrFI	CCNGG	6 cut(s)	289, 303, 372, 624, 691, 1947
SduI	GDGCHC	8 cut(s)	31, 295, 623, 1127, 1536, 1930, 2215, 3658
SfcI	CTRYAG	5 cut(s)	1902, 2070, 2227, 3171, 3729
SfuI	TTCGAA	2 cut(s)	359, 1355
SgrAI	CRCCGGYG	1 cut(s)	7
SmiMI	CAYNNNNRTG	3 cut(s)	836, 1542, 3588
SmlI	CTYRAG	1 cut(s)	2807
SmoI	CTYRAG	1 cut(s)	2807
SpeI	ACTAGT	2 cut(s)	860, 3271
SseBI	AGGCCT	2 cut(s)	249, 3476
SspI	AATATT	2 cut(s)	613, 1352
SstI	GAGCTC	2 cut(s)	31, 1930
StuI	AGGCCT	2 cut(s)	249, 3476
StyD4I	CCNGG	6 cut(s)	287, 301, 370, 622, 689, 1945
StyI	CCWWGG	5 cut(s)	202, 2161, 2359, 2671, 3414
TaaI	ACNGT	3 cut(s)	2237, 2348, 3660
TaiI	ACGT	9 cut(s)	744, 1219, 1284, 1769, 1816, 1939, 2389, 2861, 3046
TaqI	TCGA	8 cut(s)	125, 359, 488, 494, 581, 1355, 2269, 2427
TatI	WGTACW	5 cut(s)	904, 2742, 3423, 3517, 3631
TauI	GCSGC	1 cut(s)	810
TscAI	CASTG	7 cut(s)	430, 838, 1506, 1645, 2220, 3709, 3718
TseFI	GTSAC	2 cut(s)	164, 1640
Tsp45I	GTSAC	2 cut(s)	164, 1640
TspGWI	ACGGA	2 cut(s)	316, 1123
TspRI	CASTG	7 cut(s)	430, 838, 1506, 1645, 2220, 3709, 3718
Van91I	CCANNNNNTGG	2 cut(s)	766, 1922
VneI	GTGCAC	1 cut(s)	3654
XagI	CCTNNNNNAGG	2 cut(s)	1572, 2363
XapI	RAATTY	7 cut(s)	107, 322, 338, 361, 1091, 1363, 2265
XceI	RCATGY	2 cut(s)	2088, 2254
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1238, 2168
XmiI	GTMKAC	2 cut(s)	1629, 2427
XmnI	GAANNNNTTC	1 cut(s)	3009
ZraI	GACGTC	1 cut(s)	1217
ZrmI	AGTACT	2 cut(s)	2744, 3633
Zsp2I	ATGCAT	1 cut(s)	2980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.