Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004583

Physical Location & Seq

Genomic Coordinates Forward (+)

13641862 .. 13650043

Gene Structure 8182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g12840.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGCTGTGCTATAGCAACCGTGCAGCAACACGTCTGACTGTTGGAAGAATAAGAGATGCACTTGGGGACTGTAAGATGGCTGATGCAATTGATCCCAACTTCCTGAAAGTGCAGGTTAGAGCTTCCAACTGTTATCTTGCTCTTGGGGAAGTTGAAGATGCTTCACACAATTTTAGGAGGTGCCTGCAATTGGCAAATGATGTCTTTGTGGACCGAAAGATTGCAGTAGAAGCTTCTGATGGCTTACGAAAAGCACAGAAAGTATCTGAATGCCTGAATCTTTCTGCTCAACTTTTGCTATGGAAAACATCTACTAATGCCGAGCGTGCTTTACAACTTATTGATGAAGCTTTGGTAATAAGTTCTAGCTCAGAAAAATTACTTGAAATGAAAGCGGAGGCTTTTTTTGCGGTGCGTAGGTATGAAGAGGTGATTGAGCTGTGTGAGCAGACCCTTAGTTCTGCGGAAAAGAACAACCTTCCAGCAGATACCAATTTTACTTCAGATAGTTCCGAACTATCAAAGTACTTTTACTTCAGACTCTGGCGGTGCCGCATGATTTTTAAATCCTATTTTTATCTTGGAAAACTCGAGGAGGGTCTTGCTGCACTAGATAAATATGAGGAAAAGATGTCTACCTCATATAGGAATTGGAGAAAAACGCTGCAATCATCAGAACCCCTTGTTCCCGTTGTACGTGAACTTCTGTCTCATAAGGTTGCGGGGAATGAAGCATTTCAGGCTGGAAGACATACTGAAGTTGTTGAGCATTATACTACTGCTTTGTGCTGCAATGTTGAATCACGTCCATTTACAGCTGTTTGTTTTTGCAATCGTGCTGTTGCATACAAGGCATTGGGCCGGATTACTGATGCTATTGCTGATTGCAGTCTAGCTATAGCTCTTGATGGAAATTATCTAAAGGCTATTTCTGGACGAGCCACATTATACAAGATGATCAGATATTATGGAGAAGCCGCTAAAGATCTTCGGAGACTGGTATCTATTCTCGCTAAGCAGGAAGAGGAAAAAACTAATCTGTGTGGAGCATCTGACAGATCCATTAGCGGCACAAATGTCTTGAGACAAGCTCGTCTTCATCTTTCTAAAATAGAAGAAAAAGACAGAAAGGACATCCCCTTGGATATGTACCTTATTCTGGGAGTTGAACCATCTGTTTCGGCATCAGAAATCAAGAAGGCGTTTCGGAACGCTGCACTTCGACATCATCCTGACAAGGCTGGTCAATTCTTTTCAAGGAGCGATAACGGGTGTTGGAAGGAGATAGCAGAAGACGTGCAGAAGGATGCTGGCAGGCTTTTTAAAATGATTGGGGAGGCATATGCAGTACTTTCAGACCCAACCAAGCGTGCAAGGTATGGCACCGAAGAGGAGATGAGGAATGCACAAAAGAAACGCAGTGGAAGCAGCACATCTAGAATGCCAGCAGATGTTCAAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006457 GO:0006458 GO:0008047 GO:0008150 GO:0009987 GO:0030234 GO:0031072 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0051084 GO:0051085 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0061077 GO:0065007 GO:0065009 GO:0070013 GO:0080134 GO:0080135 GO:0098772 GO:1900034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ TPR_8

Protein Analysis

489

Amino Acids

55.04

Weight (kDa)

8.83

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12430
fragaria_vesca	FvH4_3g28360 FvH4_3g28360 FvH4_3g28360 FvH4_3g28360
malus_domestica	MD03G1171100.v1.1 MD03G1171300.v1.1 MD11G1188500.v1.1 MD11G1188700.v1.1
prunus_persica	Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1
pyrus_communis	pycom03g12820 pycom03g12830 pycom03g12840 pycom03g12860 pycom11g16530 pycom15g27190
rosa_chinensis	RchiOBHm_Chr5g0053371
rosa_laevigata	RLG00000034766
rosa_multiflora	Rmu_sc0001966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00029100
rosa_rugosa	Rorug05G0267200 Rorug05G0267300
rosa_samantha	Rh5AG339800 Rh5BG350200 Rh5CG376600 Rh5DG364200
rosa_wichuraiana	Rw5G032070 Rw5G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1092
Acc36I	ACCTGC	1 cut(s)	103
AccB1I	GGYRCC	3 cut(s)	180, 549, 1382
AccI	GTMKAC	1 cut(s)	635
AciI	CCGC	8 cut(s)	395, 410, 464, 547, 553, 722, 978, 1068
AclWI	GGATC	2 cut(s)	86, 1053
AcuI	CTGAAG	3 cut(s)	486, 520, 777
AfaI	GTAC	4 cut(s)	527, 696, 1151, 1350
AfiI	CCNNNNNNNGG	3 cut(s)	190, 645, 1159
AflIII	ACRYGT	1 cut(s)	29
AgsI	TTSAA	6 cut(s)	155, 386, 800, 1169, 1257, 1457
AjiI	CACGTC	3 cut(s)	32, 806, 1297
AluBI	AGCT	9 cut(s)	122, 233, 350, 369, 439, 818, 896, 902, 1091
AluI	AGCT	9 cut(s)	122, 233, 350, 369, 439, 818, 896, 902, 1091
Alw26I	GTCTC	3 cut(s)	714, 988, 1078
AlwI	GGATC	2 cut(s)	86, 1053
AlwNI	CAGNNNCTG	1 cut(s)	543
Ama87I	CYCGRG	1 cut(s)	590
AoxI	GGCC	1 cut(s)	859
ApeKI	GCWGC	6 cut(s)	23, 605, 664, 789, 1214, 1428
Asp700I	GAANNNNTTC	1 cut(s)	735
AspS9I	GGNCC	2 cut(s)	211, 859
AsuHPI	GGTGA	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	590
AvaII	GGWCC	1 cut(s)	211
BanI	GGYRCC	3 cut(s)	180, 549, 1382
BarI	GAAGNNNNNNTAC	4 cut(s)	518, 550, 687, 719
BbsI	GAAGAC	3 cut(s)	754, 1088, 1299
BbvI	GCAGC	6 cut(s)	35, 592, 651, 776, 1201, 1440
BccI	CCATC	4 cut(s)	70, 233, 902, 1180
BclI	TGATCA	1 cut(s)	957
BcoDI	GTCTC	3 cut(s)	714, 988, 1078
BfaI	CTAG	4 cut(s)	366, 611, 893, 1437
BfmI	CTRYAG	2 cut(s)	10, 897
BfuAI	ACCTGC	1 cut(s)	103
BglII	AGATCT	1 cut(s)	985
BisI	GCNGC	9 cut(s)	24, 553, 606, 665, 790, 978, 1069, 1215, 1429
BlpI	GCTNAGC	1 cut(s)	1014
BlsI	GCNGC	9 cut(s)	25, 554, 607, 666, 791, 979, 1070, 1216, 1430
BmcAI	AGTACT	2 cut(s)	527, 1350
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	590
BmgBI	CACGTC	3 cut(s)	32, 806, 1297
BmgT120I	GGNCC	2 cut(s)	211, 859
BmiI	GGNNCC	3 cut(s)	182, 551, 1384
BmsI	GCATC	7 cut(s)	46, 73, 148, 862, 1058, 1193, 1297
BpiI	GAAGAC	3 cut(s)	754, 1088, 1299
BplI	GAGNNNNNCTC	2 cut(s)	1075, 1107
Bpu1102I	GCTNAGC	1 cut(s)	1014
BpuEI	CTTGAG	1 cut(s)	1102
BsaAI	YACGTR	1 cut(s)	698
BsaJI	CCNNGG	1 cut(s)	1140
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 645, 1159
Bse1I	ACTGG	1 cut(s)	1002
Bse3DI	GCAATG	1 cut(s)	799
BseDI	CCNNGG	1 cut(s)	1140
BseGI	GGATG	3 cut(s)	1134, 1228, 1312
BseLI	CCNNNNNNNGG	3 cut(s)	190, 645, 1159
BseMI	GCAATG	1 cut(s)	799
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	1002
BseRI	GAGGAG	2 cut(s)	608, 1406
BseXI	GCAGC	6 cut(s)	35, 592, 651, 776, 1201, 1440
BsgI	GTGCAG	5 cut(s)	42, 131, 591, 1200, 1319
BshFI	GGCC	1 cut(s)	861
BshNI	GGYRCC	3 cut(s)	180, 549, 1382
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	1 cut(s)	862
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	3 cut(s)	190, 645, 1159
BsmAI	GTCTC	3 cut(s)	714, 988, 1078
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	3 cut(s)	275, 1408, 1446
BsnI	GGCC	1 cut(s)	861
BsoBI	CYCGRG	1 cut(s)	590
Bsp143I	GATC	4 cut(s)	91, 957, 985, 1058
Bsp1720I	GCTNAGC	1 cut(s)	1014
BspACI	CCGC	8 cut(s)	395, 410, 464, 547, 553, 722, 978, 1068
BspANI	GGCC	1 cut(s)	861
BspCNI	CTCAG	1 cut(s)	383
BspLI	GGNNCC	3 cut(s)	182, 551, 1384
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	2 cut(s)	86, 1053
BspT107I	GGYRCC	3 cut(s)	180, 549, 1382
BsrDI	GCAATG	1 cut(s)	799
BsrI	ACTGG	1 cut(s)	1002
BssECI	CCNNGG	1 cut(s)	1140
BssMI	GATC	4 cut(s)	91, 957, 985, 1058
BssT1I	CCWWGG	1 cut(s)	1140
Bst4CI	ACNGT	4 cut(s)	20, 40, 71, 131
Bst6I	CTCTTC	3 cut(s)	420, 1017, 1383
BstBAI	YACGTR	1 cut(s)	698
BstC8I	GCNNGC	6 cut(s)	185, 327, 1312, 1316, 1371, 1446
BstDEI	CTNAG	3 cut(s)	370, 455, 1014
BstENI	CCTNNNNNAGG	1 cut(s)	643
BstF5I	GGATG	3 cut(s)	1134, 1228, 1312
BstKTI	GATC	4 cut(s)	94, 960, 988, 1061
BstMAI	GTCTC	3 cut(s)	714, 988, 1078
BstMBI	GATC	4 cut(s)	91, 957, 985, 1058
BstMWI	GCNNNNNNNGC	7 cut(s)	230, 326, 407, 445, 740, 851, 1425
BstSFI	CTRYAG	2 cut(s)	10, 897
BstV1I	GCAGC	6 cut(s)	35, 592, 651, 776, 1201, 1440
BstV2I	GAAGAC	3 cut(s)	754, 1088, 1299
BstX2I	RGATCY	2 cut(s)	985, 1058
BstYI	RGATCY	2 cut(s)	985, 1058
BsuRI	GGCC	1 cut(s)	861
BtrI	CACGTC	3 cut(s)	32, 806, 1297
BtsCI	GGATG	3 cut(s)	1134, 1228, 1312
BtsI	GCAGTG	1 cut(s)	1426
BtsIMutI	CAGTG	1 cut(s)	1426
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	6 cut(s)	185, 327, 1312, 1316, 1371, 1446
CaiI	CAGNNNCTG	1 cut(s)	543
Cfr13I	GGNCC	2 cut(s)	211, 859
Csp6I	GTAC	4 cut(s)	526, 695, 1150, 1349
CviAII	CATG	1 cut(s)	556
CviQI	GTAC	4 cut(s)	526, 695, 1150, 1349
DdeI	CTNAG	3 cut(s)	370, 455, 1014
DpnI	GATC	4 cut(s)	93, 959, 987, 1060
DpnII	GATC	4 cut(s)	91, 957, 985, 1058
DraI	TTTAAA	2 cut(s)	565, 1324
DrdI	GACNNNNNNGTC	1 cut(s)	1092
DseDI	GACNNNNNNGTC	1 cut(s)	1092
Eam1104I	CTCTTC	3 cut(s)	420, 1017, 1383
EarI	CTCTTC	3 cut(s)	420, 1017, 1383
Eco130I	CCWWGG	1 cut(s)	1140
Eco47I	GGWCC	1 cut(s)	211
Eco57I	CTGAAG	3 cut(s)	486, 520, 777
Eco88I	CYCGRG	1 cut(s)	590
EcoNI	CCTNNNNNAGG	1 cut(s)	643
EcoT14I	CCWWGG	1 cut(s)	1140
ErhI	CCWWGG	1 cut(s)	1140
FaeI	CATG	1 cut(s)	559
FalI	AAGNNNNNCTT	2 cut(s)	1080, 1112
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	1 cut(s)	555
FauI	CCCGC	1 cut(s)	715
FauNDI	CATATG	1 cut(s)	1342
FbaI	TGATCA	1 cut(s)	957
FblI	GTMKAC	1 cut(s)	635
Fnu4HI	GCNGC	9 cut(s)	24, 553, 606, 665, 790, 978, 1069, 1215, 1429
FokI	GGATG	3 cut(s)	1121, 1215, 1319
Fsp4HI	GCNGC	9 cut(s)	24, 553, 606, 665, 790, 978, 1069, 1215, 1429
FspBI	CTAG	4 cut(s)	366, 611, 893, 1437
GluI	GCNGC	9 cut(s)	24, 553, 606, 665, 790, 978, 1069, 1215, 1429
HaeIII	GGCC	1 cut(s)	861
HapII	CCGG	1 cut(s)	862
Hin1II	CATG	1 cut(s)	559
HindIII	AAGCTT	2 cut(s)	231, 348
HinfI	GANTC	3 cut(s)	277, 540, 800
HpaII	CCGG	1 cut(s)	862
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	3 cut(s)	211, 636, 701
Hpy188III	TCNNGA	7 cut(s)	103, 905, 933, 1081, 1195, 1232, 1437
Hpy8I	GTNNAC	3 cut(s)	211, 636, 701
HpyAV	CCTTC	4 cut(s)	488, 1192, 1273, 1297
HpyCH4III	ACNGT	4 cut(s)	20, 40, 71, 131
HpyCH4IV	ACGT	4 cut(s)	31, 697, 805, 1296
HpyF10VI	GCNNNNNNNGC	7 cut(s)	230, 326, 407, 445, 740, 851, 1425
HpyF3I	CTNAG	3 cut(s)	370, 455, 1014
HpySE526I	ACGT	4 cut(s)	31, 697, 805, 1296
Hsp92II	CATG	1 cut(s)	559
Ksp22I	TGATCA	1 cut(s)	957
Kzo9I	GATC	4 cut(s)	91, 957, 985, 1058
LmnI	GCTCC	2 cut(s)	1046, 1260
Lsp1109I	GCAGC	6 cut(s)	35, 592, 651, 776, 1201, 1440
LweI	GCATC	7 cut(s)	46, 73, 148, 862, 1058, 1193, 1297
MaeI	CTAG	4 cut(s)	366, 611, 893, 1437
MaeII	ACGT	4 cut(s)	31, 697, 805, 1296
MalI	GATC	4 cut(s)	93, 959, 987, 1060
MboI	GATC	4 cut(s)	91, 957, 985, 1058
MfeI	CAATTG	2 cut(s)	87, 188
MflI	RGATCY	2 cut(s)	985, 1058
MluCI	AATT	8 cut(s)	87, 169, 188, 377, 493, 649, 913, 1247
MlyI	GAGTC	1 cut(s)	534
MmeI	TCCRAC	3 cut(s)	22, 150, 1256
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	2 cut(s)	564, 1323
MspA1I	CMGCKG	1 cut(s)	818
MspI	CCGG	1 cut(s)	862
MunI	CAATTG	2 cut(s)	87, 188
Mva1269I	GAATGC	3 cut(s)	275, 1408, 1446
MwoI	GCNNNNNNNGC	7 cut(s)	230, 326, 407, 445, 740, 851, 1425
NdeI	CATATG	1 cut(s)	1342
NdeII	GATC	4 cut(s)	91, 957, 985, 1058
NlaIII	CATG	1 cut(s)	559
NlaIV	GGNNCC	3 cut(s)	182, 551, 1384
NmeAIII	GCCGAG	1 cut(s)	346
PaeR7I	CTCGAG	1 cut(s)	590
PctI	GAATGC	3 cut(s)	275, 1408, 1446
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	2 cut(s)	277, 800
PkrI	GCNGC	9 cut(s)	25, 554, 607, 666, 791, 979, 1070, 1216, 1430
PleI	GAGTC	1 cut(s)	534
PpsI	GAGTC	1 cut(s)	534
Ppu21I	YACGTR	1 cut(s)	698
PspN4I	GGNNCC	3 cut(s)	182, 551, 1384
PspPI	GGNCC	2 cut(s)	211, 859
PspXI	VCTCGAGB	1 cut(s)	590
PstNI	CAGNNNCTG	1 cut(s)	543
PsuI	RGATCY	2 cut(s)	985, 1058
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	4 cut(s)	527, 696, 1151, 1350
RsaNI	GTAC	4 cut(s)	526, 695, 1150, 1349
SaqAI	TTAA	2 cut(s)	564, 1323
SatI	GCNGC	9 cut(s)	24, 553, 606, 665, 790, 978, 1069, 1215, 1429
Sau3AI	GATC	4 cut(s)	91, 957, 985, 1058
Sau96I	GGNCC	2 cut(s)	211, 859
ScaI	AGTACT	2 cut(s)	527, 1350
SchI	GAGTC	1 cut(s)	534
SfaNI	GCATC	7 cut(s)	46, 73, 148, 862, 1058, 1193, 1297
SfcI	CTRYAG	2 cut(s)	10, 897
Sfr274I	CTCGAG	1 cut(s)	590
SinI	GGWCC	1 cut(s)	211
SlaI	CTCGAG	1 cut(s)	590
SmlI	CTYRAG	2 cut(s)	590, 1081
SmoI	CTYRAG	2 cut(s)	590, 1081
Sse9I	AATT	8 cut(s)	87, 169, 188, 377, 493, 649, 913, 1247
SsiI	CCGC	8 cut(s)	395, 410, 464, 547, 553, 722, 978, 1068
SspMI	CTAG	4 cut(s)	366, 611, 893, 1437
StyI	CCWWGG	1 cut(s)	1140
TaaI	ACNGT	4 cut(s)	20, 40, 71, 131
TaiI	ACGT	4 cut(s)	34, 700, 808, 1299
TaqI	TCGA	2 cut(s)	591, 1222
TaqII	GACCGA	1 cut(s)	228
TasI	AATT	8 cut(s)	87, 169, 188, 377, 493, 649, 913, 1247
TatI	WGTACW	2 cut(s)	525, 1348
TauI	GCSGC	3 cut(s)	555, 980, 1071
TfiI	GAWTC	2 cut(s)	277, 800
Tru1I	TTAA	2 cut(s)	564, 1323
Tru9I	TTAA	2 cut(s)	564, 1323
TscAI	CASTG	1 cut(s)	1426
TseI	GCWGC	6 cut(s)	23, 605, 664, 789, 1214, 1428
TspDTI	ATGAA	5 cut(s)	360, 404, 438, 744, 1088
TspRI	CASTG	1 cut(s)	1426
VpaK11BI	GGWCC	1 cut(s)	211
XagI	CCTNNNNNAGG	1 cut(s)	643
XbaI	TCTAGA	1 cut(s)	1436
XhoI	CTCGAG	1 cut(s)	590
XmiI	GTMKAC	1 cut(s)	635
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	4 cut(s)	366, 611, 893, 1437
ZrmI	AGTACT	2 cut(s)	527, 1350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.