Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004583

Physical Location & Seq

Genomic Coordinates Forward (+)

54132774 .. 54143599

Gene Structure 10826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034766

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3786 bp

ATGTCGCCGGCGTTGCTAGAGTCCCGAGCTCCGGCGCACCACCCTAATCTGAACACCGGTCAGATTTCTCACCCTCCTTTCTCCTTGTTCAACTTTTCTGAATATAAATTTAAGATGAACCCATCGAATGCTAGTGATGTGTCCTCTGGATTTGGGAACTCTAGCTACGATTTTAGCTTCAATTCGTCGTCCCCTTCGCGCCAAGGCTCGGGTGTTGCGAGGCCGAGGCTTTTGAAGGTCAGAAAAGGCCTCATCAATTCGCAGTTATTGAGACCCTCAGCCGAAACCGGGGCTCCTCCGGGATTTAATCCCTTTGGGACTTCGGTTTCTGGGGAATTCAGGAGTGGTTCGGATTCGAATTTGAATCCGGGGATAGGAGGAGTGGCTGACCAAATGAGCAATTTGAAAATTGGGAGTGGCAGTGAGCTTGGGGATGTCAAAGATGCTGCTGGTTTTCATTTTGATGGAGGAACTGGGTTCAGTTCGAGTTCGAGTTCAGCTGGGAGGTTGGATGGAGGTGGTTTTGTATTTGGAAGTGAGTTTAGCAAGAGTTCCGGTTTTGATGACGGCATTGCGTCAAAGCTTCCTGAGGATATGAGGAAGTTGAATATTGAGGGCCCTGGGAATGGTGGAGCTGTTAAGAAAGGTGAGGATCGGAGATTTGATGGAGTTGCATATAGTAAGACCGGGTTCGTGCTGGGGAGTAATGACAATGTGGGTGGTTCATTGGGTAGAAACGTGGGATCGGAACTCCCCCACGAGTTGGAGGAGAAGTTGAACATTAACGAGAATGTGCAGATGGGCGGCAGGACTGACACGCATAATGCCGATGGTGTGAATAAGTTTGTGTTTAATACTAGTAAGAAGGATGACTATTCCTCTGCTGGAAGCTCGGTGAATGCACTTCCAGATAAGATGAAGAATCTGAACATAGGTCTTAGTTTTGATGGAGGAAAAGACAGTCTTCTGTTGAGAAAGATGGAGACTTTGGATATAGGAACTAAGGCTGGACACTCTACTCAATCAGATACAGGGACATCTTCCCGCCAAACATCTGTGAAGAACATGGAAACTGAGAGGGAGGATGAATTTAATTTTACAACCAAACAAGATCATTTGAGCACATCTTCTGTAGAGTTTAAAACACCAAACACTAAAGCCAACTTGTTTTCGGGCACAAACAAGAAATTGGAATTCAATGCAAAGCGGGAACCAGCAAGGGCTAGGCCCGCTAGGGATACAAGAATGAAAAAAGCATGTGGAAAATTAAAACGTCCTACTTCATCCCAGCTGGGGCTTGGGCATGATGTTGTTTCAAAAGGTGGTTCTCCAGGAAACGTTGAGGCTTTTGAATCCTATTCGCCAATGGACATTTCTCCTTATCAAGAAACATTGGCTGATAACCAATATTCGAAAGAAAATTCTGCATCTTCTGAGTCATTTAGTCTCGTCAACGATTATCCGGAAACCGATTCAATTCCGAAAGTTTCAAATAATTCTATTGATGAAGATCTTGCTATGGCAACAGAATGTCTGGATATAAATAAAGTTGATGCAGTGAGCAGACCTCCACAAGAGGAAGCTTTTGAGCACCATTTAGGGGGAAGTGTTAATGCTGATGAACCTGTTGAAGGATCTGTTTCTGGGGCTGAAACTGAAAGCTTTAAGTCTGCAACTGACGAGGTAGACTATATCAGTGATACCGCTAATTCAGTGGAGACTGAAGTTAGTTCAAGCCCAAATATGGAGAGACATGATACTGATGGCAGGATACACTTTGGCTTTCATGCAAGTTCATTGAATAGAAGTGGATTAAACTTCACGTTTGCTGCCTCTACTGCTGCTCAATGTCCATTATCACCGTCAAAACGCTTGCACAAAAAGAAAAATATGGTAAAGGCTGGTCAAGATGCCAATAGTTTTGTTCCAAATGCTAAGGTTCCATATGGATCATCCTCTGCAGAGTTTCTGCCATATTCTGGAGCTCCAGTACGTTCGACTCCAGGACACTATCAGGAAATAAACCCTCCAATTTCAGTTATTTCACAATGCAATGAAGATAATTCTGGGGTGCAGAAGGAAAAGGAGATCAAACAAGAGGCTGTCTCTTTGTCTGCTGAAACAGCTGCAGCTCAGGAAGCATGTGAGAAGTGGCGACTAAGGGGTAACCAAGCATATTCTAATGGGGATCTATCTAAAGCCGAGGACTGCTATACCCAAGGGATAAATGGTGTTTCTGAAAATGAGACATCTACAAGTTGTCTCAGGGCACTGATGCTGTGCTATAGCAACCGTGCAGCAACACGCATGTCTCTTGGAAGAATTCGAGATGCACTTGGAGATTGTATGATGGCTGCTGCAATAGATCCTAACTTCCTCAAAGTGCAAGTTAGAGCTGCCAACTGTTATCTTACCATTGGGGAGGTTCAAGATGCTTCACAACATTTTAGTAGGTGCCTCCAATTGGCAAGTGATGTCTGTGTCGACCCAAAGATTGCAGTAGAAGCCTCTGATGGGTTACAAAAGGCGCAGAAAGTGTCTGAATGTCTGAATCTCTGTGCTGAGCTTATGCAAAGGAAGACATCTACCAATGCAGAGAGTGCTTTGGAACTTATTGCTGAGGCTTTGGCAATTAGCCCTAGCTCAGAAAAATTATTAGACATGAAAGCAGAGGCTCTTTTCACGATGCGGAGGTATGATGAGGTGATTGAGCTTTGTGAGAAGACCCTTGGTTATGCTGAAAAGAACTCCCCTTTAGTAGATACTGCCATTTCTTTAGATGGATCTGAACTCTCAAAGTACTTGCACTTCAGACTTTGGCGGTGTCGTTTGATTTTTAAATCCTATTTCCATCTAGGAAAACTTGAGGAGGGCCTTGCTTCACTAGAGAAACAAGAGGAAAAGGTTTCTACCACGTATAGGAATTGGAGAAAAACTCTGGAATCATCTATTCCCCTTGTTCGCATTGTTCGTGAGCTGTTATCTTATAAGGTTGCAGGGAATGAAGCATTTCAGGCTGGGAGGCATACTGAAGCTGTTGAATGTTATACTACTGCTTTGTCATGTAATGCGGAATCTCGTCCTTTCACAGCTGTTTGTTTTTGCAATCGTGCTGCTGCATACAAAGCGCTGGGTCAGATTACTGATGCTATTGCAGATTGCAGCCTAGCTATAGCTCTTGATGGAAGTTATCTAAAGGCTATTTCTAGGCGAGCAACATTATATGAGATGATCAGAGATTATGGACAAGCAGCTAAAGATCTTTATAGACTTGTCTCTCTTCTCACTAAGCAGTTAGAGGAAAATATCAATCAATGTGGAACCTCTGATATATCCAATAGCTGTAAAAGTGATTTGAAACAAGCTCGTCTTCGTCTTTCAGAAATAGAAGAAGAAGCCAGAAAGGACATCCCCTTGGATCTGTACATTATTCTTGGAATCAAACCATCTATGTCAGCATCAGAAATTAAGAAGGCCTATCGGAAAGCTGCACTCAGACATCATCCTGACAAGGCTGTACAATTCTTTGCTAGGAGTGAAACTGGTGATGATGGGCTTTGGAAGGAGATAGCAGAAGAAGTGCACAAGGATGCTGACAGGCTTTTCAAAATGATTGGGGAGGCATATGCAGTACTTTCAGACTCTACCAAGCGTGCACGGTATGATGCTGAAGAGGAGACTAGGAATGCGCAGAAGAAACGCACTGGAAGCAGTGCAGCTAGAATGCCTGCAGATGCTCAAAATTACCCATTTGAAAGAAGCGGAAGTAGCCGACAATGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006457 GO:0006458 GO:0008047 GO:0008150 GO:0009987 GO:0030234 GO:0031072 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0051084 GO:0051085 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0061077 GO:0065007 GO:0065009 GO:0070013 GO:0080134 GO:0080135 GO:0098772 GO:1900034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ TPR_8

Protein Analysis

1262

Amino Acids

137.31

Weight (kDa)

5.89

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	1140 - 1222	1.1e-15	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12430
fragaria_vesca	FvH4_3g28360 FvH4_3g28360 FvH4_3g28360 FvH4_3g28360
malus_domestica	MD03G1171100.v1.1 MD03G1171300.v1.1 MD11G1188500.v1.1 MD11G1188700.v1.1
prunus_persica	Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1
pyrus_communis	pycom03g12820 pycom03g12830 pycom03g12840 pycom03g12860 pycom11g16530 pycom15g27190
rosa_chinensis	RchiOBHm_Chr5g0053371
rosa_laevigata	RLG00000034766
rosa_multiflora	Rmu_sc0001966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00029100
rosa_rugosa	Rorug05G0267200 Rorug05G0267300
rosa_samantha	Rh5AG339800 Rh5BG350200 Rh5CG376600 Rh5DG364200
rosa_wichuraiana	Rw5G032070 Rw5G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2988
Acc16I	TGCGCA	1 cut(s)	3690
AccB1I	GGYRCC	1 cut(s)	2454
AccB7I	CCANNNNNTGG	2 cut(s)	763, 1979
AccI	GTMKAC	2 cut(s)	1686, 2484
AccII	CGCG	1 cut(s)	199
AccIII	TCCGGA	1 cut(s)	1462
AciI	CCGC	9 cut(s)	804, 1045, 1207, 1230, 1704, 2689, 2821, 3071, 3762
AclI	AACGTT	1 cut(s)	1338
AclWI	GGATC	8 cut(s)	660, 751, 1642, 1957, 2196, 2360, 2791, 3426
AcsI	RAATTY	7 cut(s)	107, 335, 358, 1088, 1193, 1420, 2322
AcuI	CTGAAG	4 cut(s)	1743, 2794, 3051, 3690
AfaI	GTAC	5 cut(s)	1992, 2801, 3425, 3519, 3633
AfeI	AGCGCT	1 cut(s)	3129
AgeI	ACCGGT	1 cut(s)	56
AhlI	ACTAGT	1 cut(s)	857
AjnI	CCWGG	3 cut(s)	619, 1330, 2002
AjuI	GAANNNNNNNTTGG	2 cut(s)	1357, 1389
Alw21I	GWGCWC	6 cut(s)	31, 1124, 1593, 1987, 3585, 3658
Alw44I	GTGCAC	2 cut(s)	3581, 3654
AlwI	GGATC	8 cut(s)	660, 751, 1642, 1957, 2196, 2360, 2791, 3426
Ama87I	CYCGRG	2 cut(s)	24, 208
Aor13HI	TCCGGA	1 cut(s)	1462
Aor51HI	AGCGCT	1 cut(s)	3129
AoxI	GGCC	6 cut(s)	221, 247, 616, 1226, 2872, 3474
ApaI	GGGCCC	1 cut(s)	620
ApaLI	GTGCAC	2 cut(s)	3581, 3654
ApoI	RAATTY	7 cut(s)	107, 335, 358, 1088, 1193, 1420, 2322
AsiGI	ACCGGT	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	3009
AspLEI	GCGC	5 cut(s)	37, 201, 2530, 3130, 3691
AspS9I	GGNCC	4 cut(s)	616, 617, 1227, 2872
AsuC2I	CCSGG	4 cut(s)	289, 300, 369, 688
AsuHPI	GGTGA	6 cut(s)	62, 659, 907, 1851, 2716, 3557
AsuII	TTCGAA	2 cut(s)	356, 1412
AvaI	CYCGRG	2 cut(s)	24, 208
AxyI	CCTNAGG	1 cut(s)	588
BaeGI	GKGCMC	5 cut(s)	620, 1178, 2272, 3585, 3658
BanI	GGYRCC	1 cut(s)	2454
BanII	GRGCYC	4 cut(s)	31, 295, 620, 1987
BarI	GAAGNNNNNNTAC	2 cut(s)	2792, 2824
BauI	CACGAG	1 cut(s)	758
BbsI	GAAGAC	4 cut(s)	956, 2585, 2729, 3362
Bbv12I	GWGCWC	6 cut(s)	31, 1124, 1593, 1987, 3585, 3658
BbvCI	CCTCAGC	2 cut(s)	277, 2619
BceAI	ACGGC	1 cut(s)	583
BciT130I	CCWGG	3 cut(s)	621, 1332, 2004
BciVI	GTATCC	2 cut(s)	1231, 1764
BclI	TGATCA	1 cut(s)	3231
BcnI	CCSGG	4 cut(s)	289, 300, 369, 688
BcuI	ACTAGT	1 cut(s)	857
BfmI	CTRYAG	6 cut(s)	1131, 1959, 2127, 2284, 3171, 3729
BfoI	RGCGCY	1 cut(s)	3131
BfuI	GTATCC	2 cut(s)	1231, 1764
BglII	AGATCT	2 cut(s)	1510, 3259
BlpI	GCTNAGC	1 cut(s)	2562
BmcAI	AGTACT	2 cut(s)	2801, 3633
Bme1390I	CCNGG	7 cut(s)	289, 300, 369, 621, 688, 1332, 2004
BmeT110I	CYCGRG	2 cut(s)	24, 208
BmgT120I	GGNCC	4 cut(s)	616, 617, 1227, 2872
BmiI	GGNNCC	6 cut(s)	294, 618, 1212, 1941, 2456, 3322
BmrFI	CCNGG	7 cut(s)	289, 300, 369, 621, 688, 1332, 2004
BmrI	ACTGGG	1 cut(s)	483
BmuI	ACTGGG	1 cut(s)	483
BpiI	GAAGAC	4 cut(s)	956, 2585, 2729, 3362
BplI	GAGNNNNNCTC	6 cut(s)	1552, 1584, 2090, 2122, 2920, 2952
BpmI	CTGGAG	4 cut(s)	1314, 1971, 1986, 2001
Bpu10I	CCTNAGC	4 cut(s)	277, 1935, 2133, 2619
Bpu1102I	GCTNAGC	1 cut(s)	2562
Bpu14I	TTCGAA	2 cut(s)	356, 1412
BpuEI	CTTGAG	1 cut(s)	2885
BpuMI	CCSGG	4 cut(s)	289, 300, 369, 688
BsaAI	YACGTR	1 cut(s)	2916
BsaBI	GATNNNNATC	1 cut(s)	1509
BsaI	GGTCTC	1 cut(s)	265
BsaWI	WCCGGW	3 cut(s)	56, 554, 1462
BsaXI	ACNNNNNCTCC	8 cut(s)	277, 307, 406, 436, 758, 788, 1974, 2004
Bse118I	RCCGGY	2 cut(s)	7, 56
Bse1I	ACTGG	4 cut(s)	478, 1988, 3547, 3709
Bse21I	CCTNAGG	1 cut(s)	588
Bse3DI	GCAATG	2 cut(s)	570, 2059
Bse8I	GATNNNNATC	1 cut(s)	1509
BseAI	TCCGGA	1 cut(s)	1462
BseBI	CCWGG	3 cut(s)	621, 1332, 2004
BseGI	GGATG	9 cut(s)	439, 517, 874, 1090, 1283, 1952, 3408, 3502, 3595
BseJI	GATNNNNATC	1 cut(s)	1509
BseMI	GCAATG	2 cut(s)	570, 2059
BseNI	ACTGG	4 cut(s)	478, 1988, 3547, 3709
BseRI	GAGGAG	5 cut(s)	285, 393, 782, 2882, 3689
BseSI	GKGCMC	5 cut(s)	620, 1178, 2272, 3585, 3658
BseYI	CCCAGC	6 cut(s)	500, 697, 1287, 1291, 3017, 3130
BsgI	GTGCAG	5 cut(s)	815, 2093, 2316, 3474, 3735
Bsh1236I	CGCG	1 cut(s)	199
BshFI	GGCC	6 cut(s)	223, 249, 618, 1228, 2874, 3476
BshNI	GGYRCC	1 cut(s)	2454
BshTI	ACCGGT	1 cut(s)	56
BsiHKAI	GWGCWC	6 cut(s)	31, 1124, 1593, 1987, 3585, 3658
BsiHKCI	CYCGRG	2 cut(s)	24, 208
BsiSI	CCGG	9 cut(s)	8, 32, 57, 288, 299, 368, 555, 687, 1463
BslFI	GGGAC	4 cut(s)	7, 175, 331, 1048
BsmFI	GGGAC	4 cut(s)	7, 175, 331, 1048
BsmI	GAATGC	4 cut(s)	133, 904, 3691, 3729
BsnI	GGCC	6 cut(s)	223, 249, 618, 1228, 2874, 3476
Bso31I	GGTCTC	1 cut(s)	265
BsoBI	CYCGRG	2 cut(s)	24, 208
Bsp119I	TTCGAA	2 cut(s)	356, 1412
Bsp120I	GGGCCC	1 cut(s)	616
Bsp13I	TCCGGA	1 cut(s)	1462
Bsp1407I	TGTACA	2 cut(s)	3423, 3517
Bsp1720I	GCTNAGC	1 cut(s)	2562
BspACI	CCGC	9 cut(s)	804, 1045, 1207, 1230, 1704, 2689, 2821, 3071, 3762
BspANI	GGCC	6 cut(s)	223, 249, 618, 1228, 2874, 3476
BspEI	TCCGGA	1 cut(s)	1462
BspFNI	CGCG	1 cut(s)	199
BspLI	GGNNCC	6 cut(s)	294, 618, 1212, 1941, 2456, 3322
BspMAI	CTGCAG	3 cut(s)	1963, 2131, 3733
BspPI	GGATC	8 cut(s)	660, 751, 1642, 1957, 2196, 2360, 2791, 3426
BspT104I	TTCGAA	2 cut(s)	356, 1412
BspT107I	GGYRCC	1 cut(s)	2454
BspTNI	GGTCTC	1 cut(s)	265
BsrDI	GCAATG	2 cut(s)	570, 2059
BsrFI	RCCGGY	2 cut(s)	7, 56
BsrGI	TGTACA	2 cut(s)	3423, 3517
BsrI	ACTGG	4 cut(s)	478, 1988, 3547, 3709
BssAI	RCCGGY	2 cut(s)	7, 56
BssSI	CACGAG	1 cut(s)	758
BssT1I	CCWWGG	4 cut(s)	202, 2218, 2728, 3414
Bst2BI	CACGAG	1 cut(s)	758
Bst2UI	CCWGG	3 cut(s)	621, 1332, 2004
Bst4CI	ACNGT	5 cut(s)	962, 1863, 2294, 2405, 3660
Bst6I	CTCTTC	2 cut(s)	3285, 3666
BstAPI	GCANNNNNTGC	1 cut(s)	2600
BstAUI	TGTACA	2 cut(s)	3423, 3517
BstBAI	YACGTR	1 cut(s)	2916
BstBI	TTCGAA	2 cut(s)	356, 1412
BstC8I	GCNNGC	6 cut(s)	9, 1230, 1874, 3213, 3654, 3729
BstEII	GGTNACC	1 cut(s)	2165
BstENI	CCTNNNNNAGG	1 cut(s)	1629
BstF5I	GGATG	9 cut(s)	439, 517, 874, 1090, 1283, 1952, 3408, 3502, 3595
BstFNI	CGCG	1 cut(s)	199
BstH2I	RGCGCY	1 cut(s)	3131
BstHHI	GCGC	5 cut(s)	37, 201, 2530, 3130, 3691
BstNI	CCWGG	3 cut(s)	621, 1332, 2004
BstNSI	RCATGY	3 cut(s)	1260, 2145, 2311
BstPI	GGTNACC	1 cut(s)	2165
BstSCI	CCNGG	7 cut(s)	287, 298, 367, 619, 686, 1330, 2002
BstSFI	CTRYAG	6 cut(s)	1131, 1959, 2127, 2284, 3171, 3729
BstSLI	GKGCMC	5 cut(s)	620, 1178, 2272, 3585, 3658
BstUI	CGCG	1 cut(s)	199
BstV2I	GAAGAC	4 cut(s)	956, 2585, 2729, 3362
BstX2I	RGATCY	7 cut(s)	1510, 1634, 2188, 2365, 2783, 3259, 3418
BstYI	RGATCY	7 cut(s)	1510, 1634, 2188, 2365, 2783, 3259, 3418
Bsu36I	CCTNAGG	1 cut(s)	588
BsuI	GTATCC	2 cut(s)	1231, 1764
BsuRI	GGCC	6 cut(s)	223, 249, 618, 1228, 2874, 3476
BtsCI	GGATG	9 cut(s)	439, 517, 874, 1090, 1283, 1952, 3408, 3502, 3595
BtsI	GCAGTG	3 cut(s)	427, 1563, 3718
BtsIMutI	CAGTG	7 cut(s)	427, 1563, 1702, 1719, 2270, 3702, 3718
Cac8I	GCNNGC	6 cut(s)	9, 1230, 1874, 3213, 3654, 3729
CfoI	GCGC	5 cut(s)	37, 201, 2530, 3130, 3691
Cfr10I	RCCGGY	2 cut(s)	7, 56
Cfr13I	GGNCC	4 cut(s)	616, 617, 1227, 2872
CseI	GACGC	1 cut(s)	564
Csp6I	GTAC	5 cut(s)	1991, 2800, 3424, 3518, 3632
CspAI	ACCGGT	1 cut(s)	56
CspCI	CAANNNNNGTGG	4 cut(s)	700, 735, 3298, 3333
CviAII	CATG	9 cut(s)	1066, 1257, 1304, 1754, 1787, 2142, 2308, 2662, 3063
CviQI	GTAC	5 cut(s)	1991, 2800, 3424, 3518, 3632
DraI	TTTAAA	2 cut(s)	1141, 2839
Eam1104I	CTCTTC	2 cut(s)	3285, 3666
EarI	CTCTTC	2 cut(s)	3285, 3666
Ecl136II	GAGCTC	2 cut(s)	29, 1985
Eco130I	CCWWGG	4 cut(s)	202, 2218, 2728, 3414
Eco147I	AGGCCT	2 cut(s)	249, 3476
Eco24I	GRGCYC	4 cut(s)	31, 295, 620, 1987
Eco31I	GGTCTC	1 cut(s)	265
Eco47III	AGCGCT	1 cut(s)	3129
Eco53kI	GAGCTC	2 cut(s)	29, 1985
Eco57I	CTGAAG	4 cut(s)	1743, 2794, 3051, 3690
Eco81I	CCTNAGG	1 cut(s)	588
Eco88I	CYCGRG	2 cut(s)	24, 208
Eco91I	GGTNACC	1 cut(s)	2165
EcoICRI	GAGCTC	2 cut(s)	29, 1985
EcoNI	CCTNNNNNAGG	1 cut(s)	1629
EcoO109I	RGGNCCY	3 cut(s)	616, 617, 2872
EcoO65I	GGTNACC	1 cut(s)	2165
EcoRI	GAATTC	3 cut(s)	335, 1193, 2322
EcoRII	CCWGG	3 cut(s)	619, 1330, 2002
EcoT14I	CCWWGG	4 cut(s)	202, 2218, 2728, 3414
EcoT38I	GRGCYC	4 cut(s)	31, 295, 620, 1987
ErhI	CCWWGG	4 cut(s)	202, 2218, 2728, 3414
FaeI	CATG	9 cut(s)	1069, 1260, 1307, 1757, 1790, 2145, 2311, 2665, 3066
FalI	AAGNNNNNCTT	4 cut(s)	948, 980, 3354, 3386
FaqI	GGGAC	4 cut(s)	7, 175, 331, 1048
FatI	CATG	9 cut(s)	1065, 1256, 1303, 1753, 1786, 2141, 2307, 2661, 3062
FauI	CCCGC	3 cut(s)	1052, 1200, 1237
FauNDI	CATATG	2 cut(s)	1945, 3625
FbaI	TGATCA	1 cut(s)	3231
FblI	GTMKAC	2 cut(s)	1686, 2484
FokI	GGATG	9 cut(s)	446, 524, 881, 1097, 1270, 1939, 3395, 3489, 3602
FriOI	GRGCYC	4 cut(s)	31, 295, 620, 1987
FspI	TGCGCA	1 cut(s)	3690
GlaI	GCGC	5 cut(s)	36, 200, 2529, 3129, 3690
GsaI	CCCAGC	6 cut(s)	504, 701, 1291, 1295, 3021, 3134
GsuI	CTGGAG	4 cut(s)	1314, 1971, 1986, 2001
HaeII	RGCGCY	1 cut(s)	3131
HaeIII	GGCC	6 cut(s)	223, 249, 618, 1228, 2874, 3476
HapII	CCGG	9 cut(s)	8, 32, 57, 288, 299, 368, 555, 687, 1463
HgaI	GACGC	1 cut(s)	564
HhaI	GCGC	5 cut(s)	37, 201, 2530, 3130, 3691
Hin1II	CATG	9 cut(s)	1069, 1260, 1307, 1757, 1790, 2145, 2311, 2665, 3066
Hin6I	GCGC	5 cut(s)	35, 199, 2528, 3128, 3689
HinP1I	GCGC	5 cut(s)	35, 199, 2528, 3128, 3689
HincII	GTYRAC	2 cut(s)	1453, 2485
HindII	GTYRAC	2 cut(s)	1453, 2485
HindIII	AAGCTT	3 cut(s)	581, 1581, 1660
HpaII	CCGG	9 cut(s)	8, 32, 57, 288, 299, 368, 555, 687, 1463
HphI	GGTGA	6 cut(s)	62, 659, 907, 1851, 2716, 3557
Hpy166II	GTNNAC	5 cut(s)	1453, 1687, 2485, 3583, 3656
Hpy8I	GTNNAC	5 cut(s)	1453, 1687, 2485, 3583, 3656
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	7 cut(s)	204, 229, 859, 1625, 2071, 3466, 3556
HpyCH4III	ACNGT	5 cut(s)	962, 1863, 2294, 2405, 3660
HpyCH4IV	ACGT	6 cut(s)	738, 1273, 1338, 1823, 1993, 2915
HpySE526I	ACGT	6 cut(s)	738, 1273, 1338, 1823, 1993, 2915
Hsp92II	CATG	9 cut(s)	1069, 1260, 1307, 1757, 1790, 2145, 2311, 2665, 3066
HspAI	GCGC	5 cut(s)	35, 199, 2528, 3128, 3689
Kpn2I	TCCGGA	1 cut(s)	1462
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	3231
LmnI	GCTCC	5 cut(s)	34, 298, 632, 1982, 1990
MaeII	ACGT	6 cut(s)	738, 1273, 1338, 1823, 1993, 2915
MaeIII	GTNAC	2 cut(s)	2165, 2517
MfeI	CAATTG	1 cut(s)	2462
MflI	RGATCY	7 cut(s)	1510, 1634, 2188, 2365, 2783, 3259, 3418
MlyI	GAGTC	4 cut(s)	29, 1445, 1993, 3635
MmeI	TCCRAC	2 cut(s)	489, 744
MreI	CGCCGGCG	1 cut(s)	7
MroI	TCCGGA	1 cut(s)	1462
MroNI	GCCGGC	1 cut(s)	7
MroXI	GAANNNNTTC	1 cut(s)	3009
MslI	CAYNNNNRTG	2 cut(s)	462, 3588
MspA1I	CMGCKG	4 cut(s)	500, 1291, 2126, 3092
MspI	CCGG	9 cut(s)	8, 32, 57, 288, 299, 368, 555, 687, 1463
MspR9I	CCNGG	7 cut(s)	289, 300, 369, 621, 688, 1332, 2004
MunI	CAATTG	1 cut(s)	2462
Mva1269I	GAATGC	4 cut(s)	133, 904, 3691, 3729
MvaI	CCWGG	3 cut(s)	621, 1332, 2004
MvnI	CGCG	1 cut(s)	199
NaeI	GCCGGC	1 cut(s)	9
NciI	CCSGG	4 cut(s)	289, 300, 369, 688
NdeI	CATATG	2 cut(s)	1945, 3625
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	9 cut(s)	1069, 1260, 1307, 1757, 1790, 2145, 2311, 2665, 3066
NlaIV	GGNNCC	6 cut(s)	294, 618, 1212, 1941, 2456, 3322
NmeAIII	GCCGAG	2 cut(s)	249, 2227
NsbI	TGCGCA	1 cut(s)	3690
NspI	RCATGY	3 cut(s)	1260, 2145, 2311
NspV	TTCGAA	2 cut(s)	356, 1412
PasI	CCCWGGG	1 cut(s)	620
PceI	AGGCCT	2 cut(s)	249, 3476
PcsI	WCGNNNNNNNCGW	2 cut(s)	215, 2968
PctI	GAATGC	4 cut(s)	133, 904, 3691, 3729
PdiI	GCCGGC	1 cut(s)	9
PdmI	GAANNNNTTC	1 cut(s)	3009
PfeI	GAWTC	9 cut(s)	353, 364, 922, 1352, 1472, 2551, 2942, 3074, 3438
PflMI	CCANNNNNTGG	2 cut(s)	763, 1979
PfoI	TCCNGGA	3 cut(s)	298, 1330, 2002
PinAI	ACCGGT	1 cut(s)	56
PleI	GAGTC	4 cut(s)	28, 1444, 1993, 3635
PpsI	GAGTC	4 cut(s)	28, 1444, 1993, 3635
Ppu21I	YACGTR	1 cut(s)	2916
PsiI	TTATAA	1 cut(s)	2988
Psp124BI	GAGCTC	2 cut(s)	31, 1987
Psp1406I	AACGTT	1 cut(s)	1338
Psp6I	CCWGG	3 cut(s)	619, 1330, 2002
PspEI	GGTNACC	1 cut(s)	2165
PspFI	CCCAGC	6 cut(s)	500, 697, 1287, 1291, 3017, 3130
PspGI	CCWGG	3 cut(s)	619, 1330, 2002
PspN4I	GGNNCC	6 cut(s)	294, 618, 1212, 1941, 2456, 3322
PspOMI	GGGCCC	1 cut(s)	616
PspPI	GGNCC	4 cut(s)	616, 617, 1227, 2872
PsrI	GAACNNNNNNTAC	2 cut(s)	149, 181
PstI	CTGCAG	3 cut(s)	1963, 2131, 3733
PsuI	RGATCY	7 cut(s)	1510, 1634, 2188, 2365, 2783, 3259, 3418
PvuII	CAGCTG	4 cut(s)	500, 1291, 2126, 3092
RsaI	GTAC	5 cut(s)	1992, 2801, 3425, 3519, 3633
RsaNI	GTAC	5 cut(s)	1991, 2800, 3424, 3518, 3632
RseI	CAYNNNNRTG	2 cut(s)	462, 3588
SacI	GAGCTC	2 cut(s)	31, 1987
SalI	GTCGAC	1 cut(s)	2483
Sau96I	GGNCC	4 cut(s)	616, 617, 1227, 2872
ScaI	AGTACT	2 cut(s)	2801, 3633
SchI	GAGTC	4 cut(s)	29, 1445, 1993, 3635
ScrFI	CCNGG	7 cut(s)	289, 300, 369, 621, 688, 1332, 2004
SfcI	CTRYAG	6 cut(s)	1131, 1959, 2127, 2284, 3171, 3729
SfuI	TTCGAA	2 cut(s)	356, 1412
SgrAI	CRCCGGYG	1 cut(s)	7
SmiMI	CAYNNNNRTG	2 cut(s)	462, 3588
SmlI	CTYRAG	1 cut(s)	2864
SmoI	CTYRAG	1 cut(s)	2864
SpeI	ACTAGT	1 cut(s)	857
SseBI	AGGCCT	2 cut(s)	249, 3476
SsiI	CCGC	9 cut(s)	804, 1045, 1207, 1230, 1704, 2689, 2821, 3071, 3762
SspI	AATATT	2 cut(s)	610, 1409
SstI	GAGCTC	2 cut(s)	31, 1987
StuI	AGGCCT	2 cut(s)	249, 3476
StyD4I	CCNGG	7 cut(s)	287, 298, 367, 619, 686, 1330, 2002
StyI	CCWWGG	4 cut(s)	202, 2218, 2728, 3414
TaaI	ACNGT	5 cut(s)	962, 1863, 2294, 2405, 3660
TaiI	ACGT	6 cut(s)	741, 1276, 1341, 1826, 1996, 2918
TaqI	TCGA	8 cut(s)	125, 356, 485, 491, 1412, 1997, 2326, 2484
TatI	WGTACW	4 cut(s)	2799, 3423, 3517, 3631
TauI	GCSGC	1 cut(s)	807
TfiI	GAWTC	9 cut(s)	353, 364, 922, 1352, 1472, 2551, 2942, 3074, 3438
TscAI	CASTG	7 cut(s)	427, 1563, 1702, 1719, 2277, 3709, 3718
TspRI	CASTG	7 cut(s)	427, 1563, 1702, 1719, 2277, 3709, 3718
Van91I	CCANNNNNTGG	2 cut(s)	763, 1979
VneI	GTGCAC	2 cut(s)	3581, 3654
XagI	CCTNNNNNAGG	1 cut(s)	1629
XapI	RAATTY	7 cut(s)	107, 335, 358, 1088, 1193, 1420, 2322
XceI	RCATGY	3 cut(s)	1260, 2145, 2311
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1295, 2225
XmiI	GTMKAC	2 cut(s)	1686, 2484
XmnI	GAANNNNTTC	1 cut(s)	3009
ZrmI	AGTACT	2 cut(s)	2801, 3633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.