DnaJ molecular chaperone homology domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G12430 |
| fragaria_vesca | FvH4_3g28360 FvH4_3g28360 FvH4_3g28360 FvH4_3g28360 |
| malus_domestica | MD03G1171100.v1.1 MD03G1171300.v1.1 MD11G1188500.v1.1 MD11G1188700.v1.1 |
| prunus_persica | Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 |
| pyrus_communis | pycom03g12820 pycom03g12830 pycom03g12840 pycom03g12860 pycom11g16530 pycom15g27190 |
| rosa_chinensis | RchiOBHm_Chr5g0053371 |
| rosa_laevigata | RLG00000034766 |
| rosa_multiflora | Rmu_sc0001966.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00029100 |
| rosa_rugosa | Rorug05G0267200 Rorug05G0267300 |
| rosa_samantha | Rh5AG339800 Rh5BG350200 Rh5CG376600 Rh5DG364200 |
| rosa_wichuraiana | Rw5G032070 Rw5G032080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1340 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3765 |
| Acc36I | ACCTGC | 3 cut(s) | 1340, 2767, 3682 |
| AccB1I | GGYRCC | 2 cut(s) | 2844, 3225 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1385 |
| AccBSI | CCGCTC | 1 cut(s) | 1970 |
| AccI | GTMKAC | 1 cut(s) | 2079 |
| AccII | CGCG | 1 cut(s) | 247 |
| AclWI | GGATC | 6 cut(s) | 960, 1883, 2022, 2035, 2750, 3726 |
| AcuI | CTGAAG | 6 cut(s) | 405, 2139, 2367, 3030, 3647, 4089 |
| AfaI | GTAC | 9 cut(s) | 961, 1872, 2388, 2567, 3351, 3369, 3521, 3824, 4032 |
| AflII | CTTAAG | 1 cut(s) | 2768 |
| AflIII | ACRYGT | 2 cut(s) | 1273, 2693 |
| AjiI | CACGTC | 2 cut(s) | 3479, 4116 |
| AjnI | CCWGG | 9 cut(s) | 349, 891, 1684, 2162, 2374, 2398, 3165, 3984, 4217 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 209, 241, 1747, 1779 |
| Alw21I | GWGCWC | 3 cut(s) | 31, 2135, 3984 |
| Alw44I | GTGCAC | 1 cut(s) | 3980 |
| AlwI | GGATC | 6 cut(s) | 960, 1883, 2022, 2035, 2750, 3726 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 428 |
| Ama87I | CYCGRG | 1 cut(s) | 773 |
| AoxI | GGCC | 7 cut(s) | 477, 1389, 1681, 1734, 3168, 3532, 3873 |
| ApaI | GGGCCC | 1 cut(s) | 1685 |
| ApaLI | GTGCAC | 1 cut(s) | 3980 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3408 |
| AspLEI | GCGC | 3 cut(s) | 37, 1604, 2776 |
| AsuC2I | CCSGG | 2 cut(s) | 340, 403 |
| AsuII | TTCGAA | 3 cut(s) | 194, 367, 494 |
| AvaI | CYCGRG | 1 cut(s) | 773 |
| AvaII | GGWCC | 4 cut(s) | 255, 441, 770, 2875 |
| AxyI | CCTNAGG | 2 cut(s) | 741, 2654 |
| BaeGI | GKGCMC | 2 cut(s) | 1685, 3984 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2298, 2331 |
| BamHI | GGATCC | 1 cut(s) | 2027 |
| BanI | GGYRCC | 2 cut(s) | 2844, 3225 |
| BanII | GRGCYC | 3 cut(s) | 31, 1685, 2135 |
| BbsI | GAAGAC | 2 cut(s) | 3761, 3801 |
| Bbv12I | GWGCWC | 3 cut(s) | 31, 2135, 3984 |
| BbvCI | CCTCAGC | 2 cut(s) | 2070, 2592 |
| BceAI | ACGGC | 3 cut(s) | 2529, 3213, 4201 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 935, 969 |
| BciT130I | CCWGG | 9 cut(s) | 351, 893, 1686, 2164, 2376, 2400, 3167, 3986, 4219 |
| BciVI | GTATCC | 3 cut(s) | 2160, 2382, 3148 |
| BclI | TGATCA | 1 cut(s) | 3630 |
| BcnI | CCSGG | 2 cut(s) | 340, 403 |
| BfmI | CTRYAG | 7 cut(s) | 1533, 2517, 2674, 2849, 3393, 3570, 4128 |
| BfrI | CTTAAG | 1 cut(s) | 2768 |
| BfuAI | ACCTGC | 3 cut(s) | 1340, 2767, 3682 |
| BfuI | GTATCC | 3 cut(s) | 2160, 2382, 3148 |
| BglII | AGATCT | 3 cut(s) | 1903, 2578, 3658 |
| BlpI | GCTNAGC | 1 cut(s) | 1669 |
| BmcAI | AGTACT | 3 cut(s) | 961, 2388, 4032 |
| Bme18I | GGWCC | 4 cut(s) | 255, 441, 770, 2875 |
| BmeT110I | CYCGRG | 1 cut(s) | 773 |
| BmgBI | CACGTC | 2 cut(s) | 3479, 4116 |
| BoxI | GACNNNNGTC | 1 cut(s) | 422 |
| BpiI | GAAGAC | 2 cut(s) | 3761, 3801 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3748, 3780 |
| BpmI | CTGGAG | 1 cut(s) | 1239 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2070, 2523, 2592 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1669 |
| Bpu14I | TTCGAA | 3 cut(s) | 194, 367, 494 |
| BpuEI | CTTGAG | 1 cut(s) | 3287 |
| BpuMI | CCSGG | 2 cut(s) | 340, 403 |
| BsaAI | YACGTR | 2 cut(s) | 2696, 3371 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1902 |
| BsaI | GGTCTC | 2 cut(s) | 14, 262 |
| BsaJI | CCNNGG | 7 cut(s) | 272, 1307, 1684, 1685, 2806, 3121, 3813 |
| BsaWI | WCCGGW | 2 cut(s) | 257, 1646 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 13, 43, 197, 227 |
| Bse1I | ACTGG | 5 cut(s) | 392, 1288, 1436, 1795, 2124 |
| Bse21I | CCTNAGG | 2 cut(s) | 741, 2654 |
| Bse3DI | GCAATG | 2 cut(s) | 589, 1338 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1902 |
| BseBI | CCWGG | 9 cut(s) | 351, 893, 1686, 2164, 2376, 2400, 3167, 3986, 4219 |
| BseDI | CCNNGG | 7 cut(s) | 272, 1307, 1684, 1685, 2806, 3121, 3813 |
| BseJI | GATNNNNATC | 1 cut(s) | 1902 |
| BseMI | GCAATG | 2 cut(s) | 589, 1338 |
| BseNI | ACTGG | 5 cut(s) | 392, 1288, 1436, 1795, 2124 |
| BseRI | GAGGAG | 3 cut(s) | 2087, 3284, 4088 |
| BseSI | GKGCMC | 2 cut(s) | 1685, 3984 |
| BseYI | CCCAGC | 1 cut(s) | 850 |
| BsgI | GTGCAG | 4 cut(s) | 965, 2706, 3727, 3873 |
| Bsh1236I | CGCG | 1 cut(s) | 247 |
| BshFI | GGCC | 7 cut(s) | 479, 1391, 1683, 1736, 3170, 3534, 3875 |
| BshNI | GGYRCC | 2 cut(s) | 2844, 3225 |
| BsiHKAI | GWGCWC | 3 cut(s) | 31, 2135, 3984 |
| BsiHKCI | CYCGRG | 1 cut(s) | 773 |
| BsiSI | CCGG | 5 cut(s) | 32, 258, 339, 402, 1647 |
| BsmI | GAATGC | 8 cut(s) | 307, 502, 784, 1351, 1422, 2939, 4090, 4128 |
| BsnI | GGCC | 7 cut(s) | 479, 1391, 1683, 1736, 3170, 3534, 3875 |
| Bso31I | GGTCTC | 2 cut(s) | 14, 262 |
| BsoBI | CYCGRG | 1 cut(s) | 773 |
| Bsp119I | TTCGAA | 3 cut(s) | 194, 367, 494 |
| Bsp120I | GGGCCC | 1 cut(s) | 1681 |
| Bsp1286I | GDGCHC | 4 cut(s) | 31, 1685, 2135, 3984 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1669 |
| BspANI | GGCC | 7 cut(s) | 479, 1391, 1683, 1736, 3170, 3534, 3875 |
| BspFNI | CGCG | 1 cut(s) | 247 |
| BspHI | TCATGA | 1 cut(s) | 4235 |
| BspMAI | CTGCAG | 4 cut(s) | 2521, 2853, 3397, 4132 |
| BspMI | ACCTGC | 3 cut(s) | 1340, 2767, 3682 |
| BspPI | GGATC | 6 cut(s) | 960, 1883, 2022, 2035, 2750, 3726 |
| BspT104I | TTCGAA | 3 cut(s) | 194, 367, 494 |
| BspT107I | GGYRCC | 2 cut(s) | 2844, 3225 |
| BspTI | CTTAAG | 1 cut(s) | 2768 |
| BspTNI | GGTCTC | 2 cut(s) | 14, 262 |
| BsrBI | CCGCTC | 1 cut(s) | 1970 |
| BsrDI | GCAATG | 2 cut(s) | 589, 1338 |
| BsrI | ACTGG | 5 cut(s) | 392, 1288, 1436, 1795, 2124 |
| BssECI | CCNNGG | 7 cut(s) | 272, 1307, 1684, 1685, 2806, 3121, 3813 |
| BssT1I | CCWWGG | 4 cut(s) | 1307, 2806, 3121, 3813 |
| Bst2UI | CCWGG | 9 cut(s) | 351, 893, 1686, 2164, 2376, 2400, 3167, 3986, 4219 |
| Bst6I | CTCTTC | 7 cut(s) | 286, 1179, 1475, 2236, 3087, 3684, 4065 |
| BstAFI | CTTAAG | 1 cut(s) | 2768 |
| BstBAI | YACGTR | 2 cut(s) | 2696, 3371 |
| BstBI | TTCGAA | 3 cut(s) | 194, 367, 494 |
| BstC8I | GCNNGC | 6 cut(s) | 1461, 1508, 2849, 3113, 3612, 4128 |
| BstFNI | CGCG | 1 cut(s) | 247 |
| BstHHI | GCGC | 3 cut(s) | 37, 1604, 2776 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 2234, 2513, 2528, 2894, 2990, 3112, 3413, 3524, 4107 |
| BstNI | CCWGG | 9 cut(s) | 351, 893, 1686, 2164, 2376, 2400, 3167, 3986, 4219 |
| BstNSI | RCATGY | 3 cut(s) | 1241, 1277, 2535 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 422 |
| BstSFI | CTRYAG | 7 cut(s) | 1533, 2517, 2674, 2849, 3393, 3570, 4128 |
| BstSLI | GKGCMC | 2 cut(s) | 1685, 3984 |
| BstUI | CGCG | 1 cut(s) | 247 |
| BstV2I | GAAGAC | 2 cut(s) | 3761, 3801 |
| BstX2I | RGATCY | 5 cut(s) | 1903, 2027, 2578, 3658, 3731 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2317 |
| BstYI | RGATCY | 5 cut(s) | 1903, 2027, 2578, 3658, 3731 |
| Bsu36I | CCTNAGG | 2 cut(s) | 741, 2654 |
| BsuI | GTATCC | 3 cut(s) | 2160, 2382, 3148 |
| BsuRI | GGCC | 7 cut(s) | 479, 1391, 1683, 1736, 3170, 3534, 3875 |
| BtgZI | GCGATG | 1 cut(s) | 1236 |
| BtrI | CACGTC | 2 cut(s) | 3479, 4116 |
| BtsI | GCAGTG | 1 cut(s) | 4108 |
| BtsIMutI | CAGTG | 3 cut(s) | 1802, 3363, 4108 |
| BveI | ACCTGC | 3 cut(s) | 1340, 2767, 3682 |
| Cac8I | GCNNGC | 6 cut(s) | 1461, 1508, 2849, 3113, 3612, 4128 |
| CaiI | CAGNNNCTG | 1 cut(s) | 428 |
| CciI | TCATGA | 1 cut(s) | 4235 |
| CfoI | GCGC | 3 cut(s) | 37, 1604, 2776 |
| CsiI | ACCWGGT | 1 cut(s) | 4217 |
| Csp6I | GTAC | 9 cut(s) | 960, 1871, 2387, 2566, 3350, 3368, 3520, 3823, 4031 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 853, 888, 3697, 3732 |
| CviQI | GTAC | 9 cut(s) | 960, 1871, 2387, 2566, 3350, 3368, 3520, 3823, 4031 |
| DraI | TTTAAA | 3 cut(s) | 316, 1543, 3241 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3765 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3765 |
| Eam1104I | CTCTTC | 7 cut(s) | 286, 1179, 1475, 2236, 3087, 3684, 4065 |
| EarI | CTCTTC | 7 cut(s) | 286, 1179, 1475, 2236, 3087, 3684, 4065 |
| EciI | GGCGGA | 1 cut(s) | 1539 |
| Ecl136II | GAGCTC | 2 cut(s) | 29, 2133 |
| Eco130I | CCWWGG | 4 cut(s) | 1307, 2806, 3121, 3813 |
| Eco147I | AGGCCT | 2 cut(s) | 1736, 3875 |
| Eco24I | GRGCYC | 3 cut(s) | 31, 1685, 2135 |
| Eco31I | GGTCTC | 2 cut(s) | 14, 262 |
| Eco32I | GATATC | 1 cut(s) | 2973 |
| Eco47I | GGWCC | 4 cut(s) | 255, 441, 770, 2875 |
| Eco53kI | GAGCTC | 2 cut(s) | 29, 2133 |
| Eco57I | CTGAAG | 6 cut(s) | 405, 2139, 2367, 3030, 3647, 4089 |
| Eco81I | CCTNAGG | 2 cut(s) | 741, 2654 |
| Eco88I | CYCGRG | 1 cut(s) | 773 |
| EcoICRI | GAGCTC | 2 cut(s) | 29, 2133 |
| EcoO109I | RGGNCCY | 4 cut(s) | 441, 770, 1682, 3169 |
| EcoRI | GAATTC | 3 cut(s) | 196, 703, 1595 |
| EcoRII | CCWGG | 9 cut(s) | 349, 891, 1684, 2162, 2374, 2398, 3165, 3984, 4217 |
| EcoRV | GATATC | 1 cut(s) | 2973 |
| EcoT14I | CCWWGG | 4 cut(s) | 1307, 2806, 3121, 3813 |
| EcoT22I | ATGCAT | 1 cut(s) | 2347 |
| EcoT38I | GRGCYC | 3 cut(s) | 31, 1685, 2135 |
| ErhI | CCWWGG | 4 cut(s) | 1307, 2806, 3121, 3813 |
| FauI | CCCGC | 1 cut(s) | 649 |
| FauNDI | CATATG | 2 cut(s) | 2341, 4024 |
| FbaI | TGATCA | 1 cut(s) | 3630 |
| FblI | GTMKAC | 1 cut(s) | 2079 |
| FriOI | GRGCYC | 3 cut(s) | 31, 1685, 2135 |
| GlaI | GCGC | 3 cut(s) | 36, 1603, 2775 |
| GsaI | CCCAGC | 1 cut(s) | 854 |
| GsuI | CTGGAG | 1 cut(s) | 1239 |
| HaeIII | GGCC | 7 cut(s) | 479, 1391, 1683, 1736, 3170, 3534, 3875 |
| HapII | CCGG | 5 cut(s) | 32, 258, 339, 402, 1647 |
| HhaI | GCGC | 3 cut(s) | 37, 1604, 2776 |
| Hin6I | GCGC | 3 cut(s) | 35, 1602, 2774 |
| HinP1I | GCGC | 3 cut(s) | 35, 1602, 2774 |
| HincII | GTYRAC | 1 cut(s) | 1468 |
| HindII | GTYRAC | 1 cut(s) | 1468 |
| HindIII | AAGCTT | 3 cut(s) | 139, 734, 2053 |
| HpaII | CCGG | 5 cut(s) | 32, 258, 339, 402, 1647 |
| Hpy166II | GTNNAC | 6 cut(s) | 1468, 2080, 2875, 3312, 3374, 3982 |
| Hpy8I | GTNNAC | 6 cut(s) | 1468, 2080, 2875, 3312, 3374, 3982 |
| Hpy99I | CGWCG | 1 cut(s) | 10 |
| HpyCH4IV | ACGT | 7 cut(s) | 1660, 1761, 2404, 2695, 3370, 3478, 4115 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 2234, 2513, 2528, 2894, 2990, 3112, 3413, 3524, 4107 |
| HpySE526I | ACGT | 7 cut(s) | 1660, 1761, 2404, 2695, 3370, 3478, 4115 |
| HspAI | GCGC | 3 cut(s) | 35, 1602, 2774 |
| KflI | GGGWCCC | 1 cut(s) | 441 |
| Ksp22I | TGATCA | 1 cut(s) | 3630 |
| LmnI | GCTCC | 3 cut(s) | 34, 3933, 4179 |
| MabI | ACCWGGT | 1 cut(s) | 4217 |
| MaeII | ACGT | 7 cut(s) | 1660, 1761, 2404, 2695, 3370, 3478, 4115 |
| MaeIII | GTNAC | 4 cut(s) | 178, 820, 1103, 2394 |
| MbiI | CCGCTC | 1 cut(s) | 1970 |
| MflI | RGATCY | 5 cut(s) | 1903, 2027, 2578, 3658, 3731 |
| MhlI | GDGCHC | 4 cut(s) | 31, 1685, 2135, 3984 |
| MmeI | TCCRAC | 3 cut(s) | 642, 1420, 3238 |
| Mph1103I | ATGCAT | 1 cut(s) | 2347 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3408 |
| MslI | CAYNNNNRTG | 2 cut(s) | 3077, 3987 |
| MspA1I | CMGCKG | 6 cut(s) | 653, 949, 1862, 2507, 3131, 3491 |
| MspCI | CTTAAG | 1 cut(s) | 2768 |
| MspI | CCGG | 5 cut(s) | 32, 258, 339, 402, 1647 |
| Mva1269I | GAATGC | 8 cut(s) | 307, 502, 784, 1351, 1422, 2939, 4090, 4128 |
| MvaI | CCWGG | 9 cut(s) | 351, 893, 1686, 2164, 2376, 2400, 3167, 3986, 4219 |
| MvnI | CGCG | 1 cut(s) | 247 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 2234, 2513, 2528, 2894, 2990, 3112, 3413, 3524, 4107 |
| NciI | CCSGG | 2 cut(s) | 340, 403 |
| NdeI | CATATG | 2 cut(s) | 2341, 4024 |
| NmuCI | GTSAC | 2 cut(s) | 1103, 2394 |
| NsiI | ATGCAT | 1 cut(s) | 2347 |
| NspI | RCATGY | 3 cut(s) | 1241, 1277, 2535 |
| NspV | TTCGAA | 3 cut(s) | 194, 367, 494 |
| PagI | TCATGA | 1 cut(s) | 4235 |
| PaqCI | CACCTGC | 1 cut(s) | 1340 |
| PasI | CCCWGGG | 1 cut(s) | 1685 |
| PceI | AGGCCT | 2 cut(s) | 1736, 3875 |
| PciI | ACATGT | 1 cut(s) | 1273 |
| PctI | GAATGC | 8 cut(s) | 307, 502, 784, 1351, 1422, 2939, 4090, 4128 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3408 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1385 |
| PfoI | TCCNGGA | 2 cut(s) | 349, 401 |
| Ppu21I | YACGTR | 2 cut(s) | 2696, 3371 |
| PpuMI | RGGWCCY | 2 cut(s) | 441, 770 |
| PscI | ACATGT | 1 cut(s) | 1273 |
| PshAI | GACNNNNGTC | 1 cut(s) | 422 |
| Psp124BI | GAGCTC | 2 cut(s) | 31, 2135 |
| Psp5II | RGGWCCY | 2 cut(s) | 441, 770 |
| Psp6I | CCWGG | 9 cut(s) | 349, 891, 1684, 2162, 2374, 2398, 3165, 3984, 4217 |
| PspFI | CCCAGC | 1 cut(s) | 850 |
| PspGI | CCWGG | 9 cut(s) | 349, 891, 1684, 2162, 2374, 2398, 3165, 3984, 4217 |
| PspOMI | GGGCCC | 1 cut(s) | 1681 |
| PspPPI | RGGWCCY | 2 cut(s) | 441, 770 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 625, 657, 3342, 3374 |
| PstI | CTGCAG | 4 cut(s) | 2521, 2853, 3397, 4132 |
| PstNI | CAGNNNCTG | 1 cut(s) | 428 |
| PsuI | RGATCY | 5 cut(s) | 1903, 2027, 2578, 3658, 3731 |
| PvuII | CAGCTG | 4 cut(s) | 653, 949, 1862, 3491 |
| RsaI | GTAC | 9 cut(s) | 961, 1872, 2388, 2567, 3351, 3369, 3521, 3824, 4032 |
| RsaNI | GTAC | 9 cut(s) | 960, 1871, 2387, 2566, 3350, 3368, 3520, 3823, 4031 |
| RseI | CAYNNNNRTG | 2 cut(s) | 3077, 3987 |
| SacI | GAGCTC | 2 cut(s) | 31, 2135 |
| ScaI | AGTACT | 3 cut(s) | 961, 2388, 4032 |
| SduI | GDGCHC | 4 cut(s) | 31, 1685, 2135, 3984 |
| SexAI | ACCWGGT | 1 cut(s) | 4217 |
| SfcI | CTRYAG | 7 cut(s) | 1533, 2517, 2674, 2849, 3393, 3570, 4128 |
| SfuI | TTCGAA | 3 cut(s) | 194, 367, 494 |
| SinI | GGWCC | 4 cut(s) | 255, 441, 770, 2875 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 3077, 3987 |
| SmlI | CTYRAG | 2 cut(s) | 2768, 3266 |
| SmoI | CTYRAG | 2 cut(s) | 2768, 3266 |
| SseBI | AGGCCT | 2 cut(s) | 1736, 3875 |
| SstI | GAGCTC | 2 cut(s) | 31, 2135 |
| StuI | AGGCCT | 2 cut(s) | 1736, 3875 |
| StyI | CCWWGG | 4 cut(s) | 1307, 2806, 3121, 3813 |
| TaiI | ACGT | 7 cut(s) | 1663, 1764, 2407, 2698, 3373, 3481, 4118 |
| TaqI | TCGA | 9 cut(s) | 93, 194, 367, 494, 644, 1181, 1703, 2129, 3840 |
| TaqII | GACCGA | 3 cut(s) | 286, 2196, 2892 |
| TatI | WGTACW | 3 cut(s) | 959, 2386, 4030 |
| TauI | GCSGC | 1 cut(s) | 250 |
| TscAI | CASTG | 3 cut(s) | 1802, 3370, 4108 |
| TseFI | GTSAC | 2 cut(s) | 1103, 2394 |
| Tsp45I | GTSAC | 2 cut(s) | 1103, 2394 |
| TspGWI | ACGGA | 3 cut(s) | 351, 2020, 2358 |
| TspRI | CASTG | 3 cut(s) | 1802, 3370, 4108 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1385 |
| Vha464I | CTTAAG | 1 cut(s) | 2768 |
| VneI | GTGCAC | 1 cut(s) | 3980 |
| VpaK11BI | GGWCC | 4 cut(s) | 255, 441, 770, 2875 |
| XbaI | TCTAGA | 3 cut(s) | 2627, 2642, 4118 |
| XceI | RCATGY | 3 cut(s) | 1241, 1277, 2535 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 847, 1382, 1682 |
| XmiI | GTMKAC | 1 cut(s) | 2079 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3408 |
| ZrmI | AGTACT | 3 cut(s) | 961, 2388, 4032 |
| Zsp2I | ATGCAT | 1 cut(s) | 2347 |