Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004210

Physical Location & Seq

Genomic Coordinates Reverse (-)

34781613 .. 34783696

Gene Structure 2084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1261300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGTTGGAAAGCGGCCGAGAAACTCATTAGGCACTGGAAGATTCTCAGAGGAGATAATGTGATGATAACAAGAGGCAAAGACAAGGGCGAGACGGGTGTCATCAAGCGAGTCATTCGCTCTCAGAATCGTGTCATCGTAGAAGGCAAAAATCTGGTGAAGAAACATATCAAGCAAGGCCAAGGTCATGAAGGTGGGATTTTTACTGTTGAAGCACCTCTCCATGCCTCAAATGTTCAAGTTGTTGATCCAGTGACAGGGAGGCCTGTTAAGGTTGGTGTGAGATATCTCGAGGATGGAATGAAAGTTCGAGTATCTAGGGGATTAGGTGCGTCGGGATCTATAATCCCTCGTCCTGAGATCTTGAAGATAAGGACTACTCCAAGACCTACAGTTGCTGGCCCCAAGGACACTCCGATGGATGTCGTGTTCGAGAAGACTTACGATGCTAAGACGGGGAAGGGCATGCCTGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

160

Amino Acids

17.51

Weight (kDa)

10.31

Isoelectric Point (pI)

25.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KOW	PF00467	17 - 48	4.5e-10	KOW motif
ribosomal_L24	PF17136	51 - 108	3e-21	Large ribosomal subunit protein uL24, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23535 AT5G23535
fragaria_vesca	FvH4_2g23200
malus_domestica	MD03G1261300.v1.1 MD11G1281700.v1.1
prunus_persica	Prupe.1G577100_v2.0.a1 Prupe.1G577100_v2.0.a1 Prupe.8G237600_v2.0.a1 Prupe.8G237600_v2.0.a1
pyrus_communis	pycom03g20930 pycom11g24980
rosa_chinensis	RchiOBHm_Chr1g0329981 RchiOBHm_Chr6g0290451
rosa_laevigata	RLG00000012214 RLG00000029859
rosa_multiflora	Rmu_sc0000499.1_g000005 Rmu_sc0002890.1_g000007 Rmu_sc0009365.1_g000007 Rmu_sc0009365.1_g000020
rosa_roxburghii	Rroxscaffold_7G00177050
rosa_rugosa	Rorug01G0083600 Rorug01G0083700 Rorug01G0083800 Rorug01G0083900 Rorug01G0085000 Rorug01G0085100 Rorug06G0212800
rosa_samantha	Rh1BG081000 Rh6CG336500 Rh6DG323400
rosa_wichuraiana	Rw0G022380 Rw1G008290 Rw6G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	2 cut(s)	242, 346
AcoI	YGGCCR	1 cut(s)	15
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	3 cut(s)	212, 239, 367
AloI	GAACNNNNNNTCC	4 cut(s)	291, 323, 413, 445
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	2 cut(s)	242, 346
AlwNI	CAGNNNCTG	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	4 cut(s)	15, 178, 263, 400
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	443
BccI	CCATC	2 cut(s)	290, 412
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	390
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	1 cut(s)	403
BmsI	GCATC	1 cut(s)	436
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	443
BsaJI	CCNNGG	2 cut(s)	181, 405
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	2 cut(s)	41, 251
BseDI	CCNNGG	2 cut(s)	181, 405
BseGI	GGATG	2 cut(s)	301, 427
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMII	CTCAG	3 cut(s)	61, 137, 348
BseNI	ACTGG	2 cut(s)	41, 251
BseRI	GAGGAG	1 cut(s)	66
BseX3I	CGGCCG	1 cut(s)	15
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	4 cut(s)	17, 180, 265, 402
BsiEI	CGRYCG	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	86
BsmBI	CGTCTC	1 cut(s)	86
BsnI	GGCC	4 cut(s)	17, 180, 265, 402
BsoBI	CYCGRG	1 cut(s)	290
Bsp143I	GATC	3 cut(s)	247, 338, 360
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	4 cut(s)	17, 180, 265, 402
BspCNI	CTCAG	3 cut(s)	60, 136, 349
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	403
BspPI	GGATC	2 cut(s)	242, 346
BsrI	ACTGG	2 cut(s)	41, 251
BssECI	CCNNGG	2 cut(s)	181, 405
BssMI	GATC	3 cut(s)	247, 338, 360
BssT1I	CCWWGG	2 cut(s)	181, 405
Bst4CI	ACNGT	2 cut(s)	208, 394
BstC8I	GCNNGC	2 cut(s)	400, 467
BstDEI	CTNAG	4 cut(s)	47, 123, 357, 450
BstF5I	GGATG	2 cut(s)	301, 427
BstKTI	GATC	3 cut(s)	250, 341, 363
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	3 cut(s)	247, 338, 360
BstMCI	CGRYCG	1 cut(s)	18
BstNSI	RCATGY	1 cut(s)	469
BstPAI	GACNNNNGTC	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	390
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	2 cut(s)	338, 360
BstYI	RGATCY	2 cut(s)	338, 360
BstZI	CGGCCG	1 cut(s)	15
BsuRI	GGCC	4 cut(s)	17, 180, 265, 402
BtsCI	GGATG	2 cut(s)	301, 427
BtsIMutI	CAGTG	2 cut(s)	34, 258
Cac8I	GCNNGC	2 cut(s)	400, 467
CaiI	CAGNNNCTG	1 cut(s)	398
CciI	TCATGA	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	401
CseI	GACGC	1 cut(s)	321
CviAII	CATG	3 cut(s)	188, 224, 466
CviJI	RGCY	4 cut(s)	17, 180, 265, 402
CviKI_1	RGCY	4 cut(s)	17, 180, 265, 402
DdeI	CTNAG	4 cut(s)	47, 123, 357, 450
DpnI	GATC	3 cut(s)	249, 340, 362
DpnII	GATC	3 cut(s)	247, 338, 360
EaeI	YGGCCR	1 cut(s)	15
EagI	CGGCCG	1 cut(s)	15
EclXI	CGGCCG	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	181, 405
Eco147I	AGGCCT	1 cut(s)	265
Eco32I	GATATC	1 cut(s)	287
Eco52I	CGGCCG	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	290
EcoRV	GATATC	1 cut(s)	287
EcoT14I	CCWWGG	2 cut(s)	181, 405
ErhI	CCWWGG	2 cut(s)	181, 405
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	3 cut(s)	191, 227, 469
FaiI	YATR	5 cut(s)	168, 189, 225, 344, 467
FatI	CATG	3 cut(s)	187, 223, 465
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	2 cut(s)	308, 434
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	4 cut(s)	17, 180, 265, 402
HgaI	GACGC	1 cut(s)	321
Hin1II	CATG	3 cut(s)	191, 227, 469
HinfI	GANTC	3 cut(s)	43, 111, 127
HphI	GGTGA	1 cut(s)	169
Hpy188I	TCNGA	3 cut(s)	50, 126, 417
Hpy188III	TCNNGA	6 cut(s)	188, 290, 336, 356, 364, 433
Hpy99I	CGWCG	1 cut(s)	337
HpyAV	CCTTC	3 cut(s)	137, 185, 454
HpyCH4III	ACNGT	2 cut(s)	208, 394
HpyF3I	CTNAG	4 cut(s)	47, 123, 357, 450
Hsp92II	CATG	3 cut(s)	191, 227, 469
Kzo9I	GATC	3 cut(s)	247, 338, 360
LpnPI	CCDG	7 cut(s)	22, 140, 243, 264, 279, 369, 384
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	3 cut(s)	249, 340, 362
MboI	GATC	3 cut(s)	247, 338, 360
MboII	GAAGA	4 cut(s)	52, 172, 379, 448
MflI	RGATCY	2 cut(s)	338, 360
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	7 cut(s)	44, 68, 228, 238, 255, 286, 360
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	2 cut(s)	192, 416
NdeII	GATC	3 cut(s)	247, 338, 360
NlaIII	CATG	3 cut(s)	191, 227, 469
NlaIV	GGNNCC	1 cut(s)	403
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	469
PaeI	GCATGC	1 cut(s)	469
PaeR7I	CTCGAG	1 cut(s)	290
PagI	TCATGA	1 cut(s)	187
PceI	AGGCCT	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	43, 127
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PshAI	GACNNNNGTC	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	401
PstNI	CAGNNNCTG	1 cut(s)	398
PsuI	RGATCY	2 cut(s)	338, 360
RseI	CAYNNNNRTG	2 cut(s)	192, 416
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	3 cut(s)	247, 338, 360
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	1 cut(s)	120
SetI	ASST	6 cut(s)	187, 196, 220, 276, 331, 391
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	1 cut(s)	390
Sfr274I	CTCGAG	1 cut(s)	290
SlaI	CTCGAG	1 cut(s)	290
SmiMI	CAYNNNNRTG	2 cut(s)	192, 416
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	469
SseBI	AGGCCT	1 cut(s)	265
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	318
StuI	AGGCCT	1 cut(s)	265
StyI	CCWWGG	2 cut(s)	181, 405
TaaI	ACNGT	2 cut(s)	208, 394
TaqI	TCGA	3 cut(s)	291, 310, 432
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	43, 127
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	2 cut(s)	41, 258
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	2 cut(s)	204, 317
TspRI	CASTG	2 cut(s)	41, 258
XceI	RCATGY	1 cut(s)	469
XhoI	CTCGAG	1 cut(s)	290
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.