Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004210

Physical Location & Seq

Genomic Coordinates Forward (+)

12796280 .. 12799081

Gene Structure 2802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG081000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGTTGGAAAGCAGCTGAGAAACTTATTAGGCACTGGAAGGTTCTTAGAGGAGACAATGTGATGATCATAAGAGGCAAAGACAAGGGTGAGACAGGTGTCATTAAGAGAGTCATTCGCTCTCAGAATCGTGTAATTGTGGAGGGCAAAAATCTGGTAAAGAAACATATCAAGCAAGGCCAAGGTCATGAAGGCGGGATATTTACTGTTGAAGCCCCTCTTCATGCCTCAAATGTGCAAGTAACAGATCCAGTAACAGGGAGGCCTTGTAAGGTTGGGGTTAAATATCTTGAGGATGGAACAAAAGTTAGAGTAGCAAGAGGCACAGGAGCATCGGGATCTATAATCCCTCGTCCTGAGATCTTGAAGATAAGAGCTACCCCAAGACCTACCGTTGCTGGTCCAAAGGATACTCCTATGAATCTTGTGTTAGAGAAGACGTATGATGCCAAAACAGGGAAGGGCTTGCCTGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

159

Amino Acids

17.36

Weight (kDa)

10.25

Isoelectric Point (pI)

18.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KOW	PF00467	17 - 48	4.7e-10	KOW motif
ribosomal_L24	PF17136	51 - 111	1.5e-21	Large ribosomal subunit protein uL24, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23535 AT5G23535
fragaria_vesca	FvH4_2g23200
malus_domestica	MD03G1261300.v1.1 MD11G1281700.v1.1
prunus_persica	Prupe.1G577100_v2.0.a1 Prupe.1G577100_v2.0.a1 Prupe.8G237600_v2.0.a1 Prupe.8G237600_v2.0.a1
pyrus_communis	pycom03g20930 pycom11g24980
rosa_chinensis	RchiOBHm_Chr1g0329981 RchiOBHm_Chr6g0290451
rosa_laevigata	RLG00000012214 RLG00000029859
rosa_multiflora	Rmu_sc0000499.1_g000005 Rmu_sc0002890.1_g000007 Rmu_sc0009365.1_g000007 Rmu_sc0009365.1_g000020
rosa_roxburghii	Rroxscaffold_7G00177050
rosa_rugosa	Rorug01G0083600 Rorug01G0083700 Rorug01G0083800 Rorug01G0083900 Rorug01G0085000 Rorug01G0085100 Rorug06G0212800
rosa_samantha	Rh1BG081000 Rh6CG336500 Rh6DG323400
rosa_wichuraiana	Rw0G022380 Rw1G008290 Rw6G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	2 cut(s)	242, 346
AfiI	CCNNNNNNNGG	2 cut(s)	257, 456
AgsI	TTSAA	2 cut(s)	212, 367
AluBI	AGCT	2 cut(s)	17, 377
AluI	AGCT	2 cut(s)	17, 377
Alw26I	GTCTC	2 cut(s)	48, 86
AlwI	GGATC	2 cut(s)	242, 346
AoxI	GGCC	2 cut(s)	178, 263
ApeKI	GCWGC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	443
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	290
BciVI	GTATCC	1 cut(s)	403
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	2 cut(s)	48, 86
BfuI	GTATCC	1 cut(s)	403
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	401
BmsI	GCATC	2 cut(s)	341, 436
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	443
BpuEI	CTTGAG	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	181
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 253, 283
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 456
Bse1I	ACTGG	2 cut(s)	41, 251
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	2 cut(s)	257, 456
BseMII	CTCAG	3 cut(s)	9, 137, 348
BseNI	ACTGG	2 cut(s)	41, 251
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	26
BshFI	GGCC	2 cut(s)	180, 265
BslI	CCNNNNNNNGG	2 cut(s)	257, 456
BsmAI	GTCTC	2 cut(s)	48, 86
BsnI	GGCC	2 cut(s)	180, 265
Bsp143I	GATC	4 cut(s)	66, 247, 338, 360
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	2 cut(s)	180, 265
BspCNI	CTCAG	3 cut(s)	10, 136, 349
BspHI	TCATGA	1 cut(s)	187
BspPI	GGATC	2 cut(s)	242, 346
BsrI	ACTGG	2 cut(s)	41, 251
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	4 cut(s)	66, 247, 338, 360
BssT1I	CCWWGG	1 cut(s)	181
Bst4CI	ACNGT	2 cut(s)	208, 394
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	467
BstDEI	CTNAG	4 cut(s)	18, 47, 123, 357
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	4 cut(s)	69, 250, 341, 363
BstMAI	GTCTC	2 cut(s)	48, 86
BstMBI	GATC	4 cut(s)	66, 247, 338, 360
BstPAI	GACNNNNGTC	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	3 cut(s)	247, 338, 360
BstYI	RGATCY	3 cut(s)	247, 338, 360
BsuI	GTATCC	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	180, 265
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	467
CciI	TCATGA	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	401
CviAII	CATG	2 cut(s)	188, 224
CviJI	RGCY	6 cut(s)	17, 180, 215, 265, 377, 465
CviKI_1	RGCY	6 cut(s)	17, 180, 215, 265, 377, 465
DdeI	CTNAG	4 cut(s)	18, 47, 123, 357
DpnI	GATC	4 cut(s)	68, 249, 340, 362
DpnII	GATC	4 cut(s)	66, 247, 338, 360
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	181
Eco147I	AGGCCT	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	2 cut(s)	191, 227
FaiI	YATR	7 cut(s)	71, 168, 189, 225, 344, 419, 444
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FatI	CATG	2 cut(s)	187, 223
FauI	CCCGC	1 cut(s)	188
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	180, 265
Hin1II	CATG	2 cut(s)	191, 227
HinfI	GANTC	3 cut(s)	111, 127, 421
HphI	GGTGA	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	5 cut(s)	188, 290, 336, 356, 364
HpyAV	CCTTC	3 cut(s)	34, 185, 454
HpyCH4III	ACNGT	2 cut(s)	208, 394
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	1 cut(s)	238
HpyF3I	CTNAG	4 cut(s)	18, 47, 123, 357
HpySE526I	ACGT	1 cut(s)	440
Hsp92II	CATG	2 cut(s)	191, 227
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	4 cut(s)	66, 247, 338, 360
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	9 cut(s)	22, 81, 140, 243, 264, 312, 369, 384, 441
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	2 cut(s)	341, 436
MaeII	ACGT	1 cut(s)	440
MaeIII	GTNAC	2 cut(s)	241, 253
MalI	GATC	4 cut(s)	68, 249, 340, 362
MboI	GATC	4 cut(s)	66, 247, 338, 360
MboII	GAAGA	3 cut(s)	212, 379, 448
MflI	RGATCY	3 cut(s)	247, 338, 360
MluCI	AATT	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	9 cut(s)	44, 68, 136, 228, 238, 255, 286, 314, 360
MseI	TTAA	2 cut(s)	105, 282
MspA1I	CMGCKG	1 cut(s)	17
NdeII	GATC	4 cut(s)	66, 247, 338, 360
NlaIII	CATG	2 cut(s)	191, 227
PagI	TCATGA	1 cut(s)	187
PceI	AGGCCT	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	127, 421
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PshAI	GACNNNNGTC	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	401
PsuI	RGATCY	3 cut(s)	247, 338, 360
PvuII	CAGCTG	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	105, 282
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	4 cut(s)	66, 247, 338, 360
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	1 cut(s)	120
SetI	ASST	8 cut(s)	19, 45, 100, 187, 276, 379, 391, 443
SfaNI	GCATC	2 cut(s)	341, 436
SinI	GGWCC	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	1 cut(s)	135
SseBI	AGGCCT	1 cut(s)	265
SsiI	CCGC	1 cut(s)	195
StuI	AGGCCT	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	2 cut(s)	208, 394
TaiI	ACGT	1 cut(s)	443
TasI	AATT	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	127, 421
Tru1I	TTAA	2 cut(s)	105, 282
Tru9I	TTAA	2 cut(s)	105, 282
TscAI	CASTG	1 cut(s)	41
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	3 cut(s)	204, 212, 434
TspRI	CASTG	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.