Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004210

Physical Location & Seq

Genomic Coordinates Reverse (-)

39947451 .. 39949781

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1281700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGTTGGAAAGCGGCTGAGAAACTCATTAGGCACTGGAAGATTCTCAGAGGAGATAATGTGATGATAACAAGAGGCAAAGACAAGGGCGAGACGGGTGTCATCAAGCGAGTAATTCGCTCTCAGAATCGTGTCATCGTGGAAGGCAAAAATCTGGTAAAGAAACATATCAAGCAAGGCCAAGGTCATGAAGGTGGGATTTTCACTGTCGAAGCGCCTCTCCATGCCTCAAATGTGCAAGTTGTTGATCCGGTGACAGGGAGGGCTGTTAAGGTCGGTGTGAGATATCTCGAGGATGGAACAAAAGTTCGAGTATCTAGAGGATTAGGCGCTTCAGGATCTATAATCCCTCGTCCTGAGATCTTGAAAATAAGGACTACTCCAAGACCGACTGTTGCTGGCCCCAAGGACACTCCGATGGATGTCGTGTTGGAGAAGACATATGACGCTAAGACGGGGAAGGGAATGCCTGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

160

Amino Acids

17.42

Weight (kDa)

10.31

Isoelectric Point (pI)

22.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KOW	PF00467	17 - 48	4.5e-10	KOW motif
ribosomal_L24	PF17136	51 - 108	2.5e-21	Large ribosomal subunit protein uL24, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23535 AT5G23535
fragaria_vesca	FvH4_2g23200
malus_domestica	MD03G1261300.v1.1 MD11G1281700.v1.1
prunus_persica	Prupe.1G577100_v2.0.a1 Prupe.1G577100_v2.0.a1 Prupe.8G237600_v2.0.a1 Prupe.8G237600_v2.0.a1
pyrus_communis	pycom03g20930 pycom11g24980
rosa_chinensis	RchiOBHm_Chr1g0329981 RchiOBHm_Chr6g0290451
rosa_laevigata	RLG00000012214 RLG00000029859
rosa_multiflora	Rmu_sc0000499.1_g000005 Rmu_sc0002890.1_g000007 Rmu_sc0009365.1_g000007 Rmu_sc0009365.1_g000020
rosa_roxburghii	Rroxscaffold_7G00177050
rosa_rugosa	Rorug01G0083600 Rorug01G0083700 Rorug01G0083800 Rorug01G0083900 Rorug01G0085000 Rorug01G0085100 Rorug06G0212800
rosa_samantha	Rh1BG081000 Rh6CG336500 Rh6DG323400
rosa_wichuraiana	Rw0G022380 Rw1G008290 Rw6G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	2 cut(s)	242, 346
AcuI	CTGAAG	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	1 cut(s)	367
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	2 cut(s)	242, 346
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	2 cut(s)	178, 400
AspLEI	GCGC	2 cut(s)	217, 332
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	443
BccI	CCATC	2 cut(s)	290, 412
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	318
BfoI	RGCGCY	2 cut(s)	218, 333
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	1 cut(s)	403
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	443
BsaJI	CCNNGG	2 cut(s)	181, 405
BsaWI	WCCGGW	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	181, 405
BseGI	GGATG	2 cut(s)	301, 427
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMII	CTCAG	4 cut(s)	9, 61, 137, 348
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	180, 402
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	86
BsmBI	CGTCTC	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	2 cut(s)	180, 402
BsoBI	CYCGRG	1 cut(s)	290
Bsp143I	GATC	3 cut(s)	247, 338, 360
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	2 cut(s)	180, 402
BspCNI	CTCAG	4 cut(s)	10, 60, 136, 349
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	403
BspPI	GGATC	2 cut(s)	242, 346
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	181, 405
BssMI	GATC	3 cut(s)	247, 338, 360
BssT1I	CCWWGG	2 cut(s)	181, 405
Bst4CI	ACNGT	2 cut(s)	208, 394
BstC8I	GCNNGC	1 cut(s)	400
BstDEI	CTNAG	5 cut(s)	18, 47, 123, 357, 450
BstF5I	GGATG	2 cut(s)	301, 427
BstH2I	RGCGCY	2 cut(s)	218, 333
BstHHI	GCGC	2 cut(s)	217, 332
BstKTI	GATC	3 cut(s)	250, 341, 363
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	3 cut(s)	247, 338, 360
BstPAI	GACNNNNGTC	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	2 cut(s)	338, 360
BstYI	RGATCY	2 cut(s)	338, 360
BsuRI	GGCC	2 cut(s)	180, 402
BtsCI	GGATG	2 cut(s)	301, 427
BtsIMutI	CAGTG	2 cut(s)	34, 204
Cac8I	GCNNGC	1 cut(s)	400
CciI	TCATGA	1 cut(s)	187
CfoI	GCGC	2 cut(s)	217, 332
Cfr13I	GGNCC	1 cut(s)	401
CseI	GACGC	1 cut(s)	455
CviAII	CATG	2 cut(s)	188, 224
CviJI	RGCY	4 cut(s)	17, 180, 266, 402
CviKI_1	RGCY	4 cut(s)	17, 180, 266, 402
DdeI	CTNAG	5 cut(s)	18, 47, 123, 357, 450
DpnI	GATC	3 cut(s)	249, 340, 362
DpnII	GATC	3 cut(s)	247, 338, 360
Eco130I	CCWWGG	2 cut(s)	181, 405
Eco32I	GATATC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	290
EcoRV	GATATC	1 cut(s)	287
EcoT14I	CCWWGG	2 cut(s)	181, 405
ErhI	CCWWGG	2 cut(s)	181, 405
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	2 cut(s)	191, 227
FaiI	YATR	6 cut(s)	168, 189, 225, 344, 442, 444
FatI	CATG	2 cut(s)	187, 223
FauNDI	CATATG	1 cut(s)	442
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	2 cut(s)	308, 434
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	2 cut(s)	216, 331
GluI	GCNGC	1 cut(s)	15
HaeII	RGCGCY	2 cut(s)	218, 333
HaeIII	GGCC	2 cut(s)	180, 402
HapII	CCGG	1 cut(s)	251
HgaI	GACGC	1 cut(s)	455
HhaI	GCGC	2 cut(s)	217, 332
Hin1II	CATG	2 cut(s)	191, 227
Hin6I	GCGC	2 cut(s)	215, 330
HinP1I	GCGC	2 cut(s)	215, 330
HinfI	GANTC	2 cut(s)	43, 127
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	3 cut(s)	50, 126, 417
Hpy188III	TCNNGA	6 cut(s)	188, 290, 318, 336, 356, 364
HpyAV	CCTTC	3 cut(s)	137, 185, 454
HpyCH4III	ACNGT	2 cut(s)	208, 394
HpyCH4V	TGCA	1 cut(s)	238
HpyF3I	CTNAG	5 cut(s)	18, 47, 123, 357, 450
Hsp92II	CATG	2 cut(s)	191, 227
HspAI	GCGC	2 cut(s)	215, 330
Kzo9I	GATC	3 cut(s)	247, 338, 360
LpnPI	CCDG	7 cut(s)	22, 140, 243, 264, 321, 369, 384
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	3 cut(s)	249, 340, 362
MboI	GATC	3 cut(s)	247, 338, 360
MboII	GAAGA	2 cut(s)	52, 448
MflI	RGATCY	2 cut(s)	338, 360
MluCI	AATT	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	8 cut(s)	44, 68, 228, 238, 255, 286, 314, 360
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	2 cut(s)	192, 416
MspI	CCGG	1 cut(s)	251
Mva1269I	GAATGC	1 cut(s)	471
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	3 cut(s)	247, 338, 360
NlaIII	CATG	2 cut(s)	191, 227
NlaIV	GGNNCC	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	253
PaeR7I	CTCGAG	1 cut(s)	290
PagI	TCATGA	1 cut(s)	187
PctI	GAATGC	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	43, 127
PkrI	GCNGC	1 cut(s)	16
PshAI	GACNNNNGTC	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	401
PsuI	RGATCY	2 cut(s)	338, 360
RseI	CAYNNNNRTG	2 cut(s)	192, 416
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	3 cut(s)	247, 338, 360
Sau96I	GGNCC	1 cut(s)	401
SetI	ASST	3 cut(s)	187, 196, 276
Sfr274I	CTCGAG	1 cut(s)	290
SlaI	CTCGAG	1 cut(s)	290
SmiMI	CAYNNNNRTG	2 cut(s)	192, 416
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	1 cut(s)	114
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	318
StyI	CCWWGG	2 cut(s)	181, 405
TaaI	ACNGT	2 cut(s)	208, 394
TaqI	TCGA	3 cut(s)	210, 291, 310
TaqII	GACCGA	1 cut(s)	403
TasI	AATT	1 cut(s)	114
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	43, 127
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	2 cut(s)	41, 211
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	2 cut(s)	41, 211
XbaI	TCTAGA	1 cut(s)	317
XhoI	CTCGAG	1 cut(s)	290
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.