Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004210

Physical Location & Seq

Genomic Coordinates Forward (+)

16600873 .. 16605713

Gene Structure 4841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00177050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGTTGGAAAGCAGCTGAGAAACTTATTAGGCACTGGAAGGTTCTTAGAGGAGACAATGTGATGATCATAAGAGGCAAAGACAAGGGTGAGACCGGTGTCATCAAGCGAGTCATTCGCTCTCAGAATCGTGTAATTGTGGAGGGCAAAAATCTGGTAAAGAAACATATCAAGCAAGGCCAAGGTCATGAAGGCGGGATATTCACTGTCGAAGCTCCTCTTCATGCCTCAAATGTGCAAGTTGTTGATCCAGTAACAGGGAGGCCTTGTAAGGTTGGGGTTAAATATCTTGAGGATGGAACAAAAGTTAGAGTAGCAAGAGGCACAGGAGCATCGGGATCTATAATCCCTCGACCTGAAATCTTGAAGATGAGGACTACCCCAAGACCTACCGTTGCTGGTCCAAAGGATACTCCTATGAATCTTGTGTTGGAGAAGACATATGATGCCAAAGCAGGAAAGGGCATGCCTGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

159

Amino Acids

17.39

Weight (kDa)

10.25

Isoelectric Point (pI)

22.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KOW	PF00467	17 - 48	4.7e-10	KOW motif
ribosomal_L24	PF17136	51 - 111	2e-22	Large ribosomal subunit protein uL24, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23535 AT5G23535
fragaria_vesca	FvH4_2g23200
malus_domestica	MD03G1261300.v1.1 MD11G1281700.v1.1
prunus_persica	Prupe.1G577100_v2.0.a1 Prupe.1G577100_v2.0.a1 Prupe.8G237600_v2.0.a1 Prupe.8G237600_v2.0.a1
pyrus_communis	pycom03g20930 pycom11g24980
rosa_chinensis	RchiOBHm_Chr1g0329981 RchiOBHm_Chr6g0290451
rosa_laevigata	RLG00000012214 RLG00000029859
rosa_multiflora	Rmu_sc0000499.1_g000005 Rmu_sc0002890.1_g000007 Rmu_sc0009365.1_g000007 Rmu_sc0009365.1_g000020
rosa_roxburghii	Rroxscaffold_7G00177050
rosa_rugosa	Rorug01G0083600 Rorug01G0083700 Rorug01G0083800 Rorug01G0083900 Rorug01G0085000 Rorug01G0085100 Rorug06G0212800
rosa_samantha	Rh1BG081000 Rh6CG336500 Rh6DG323400
rosa_wichuraiana	Rw0G022380 Rw1G008290 Rw6G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	2 cut(s)	242, 346
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgeI	ACCGGT	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	367
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AluBI	AGCT	2 cut(s)	17, 215
AluI	AGCT	2 cut(s)	17, 215
Alw26I	GTCTC	2 cut(s)	48, 86
AlwI	GGATC	2 cut(s)	242, 346
AoxI	GGCC	2 cut(s)	178, 263
ApeKI	GCWGC	1 cut(s)	14
AsiGI	ACCGGT	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	443
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	290
BciVI	GTATCC	1 cut(s)	403
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	2 cut(s)	48, 86
BfuI	GTATCC	1 cut(s)	403
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	401
BmsI	GCATC	2 cut(s)	341, 436
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	443
BpuEI	CTTGAG	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	181
BsaWI	WCCGGW	1 cut(s)	95
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 253, 283
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	41, 251
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMII	CTCAG	2 cut(s)	9, 137
BseNI	ACTGG	2 cut(s)	41, 251
BseRI	GAGGAG	2 cut(s)	66, 207
BseXI	GCAGC	1 cut(s)	26
BshFI	GGCC	2 cut(s)	180, 265
BshTI	ACCGGT	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	2 cut(s)	48, 86
BsnI	GGCC	2 cut(s)	180, 265
Bso31I	GGTCTC	1 cut(s)	86
Bsp143I	GATC	3 cut(s)	66, 247, 338
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	2 cut(s)	180, 265
BspCNI	CTCAG	2 cut(s)	10, 136
BspHI	TCATGA	1 cut(s)	187
BspPI	GGATC	2 cut(s)	242, 346
BspTNI	GGTCTC	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	41, 251
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	3 cut(s)	66, 247, 338
BssT1I	CCWWGG	1 cut(s)	181
Bst4CI	ACNGT	2 cut(s)	208, 394
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	467
BstDEI	CTNAG	3 cut(s)	18, 47, 123
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	3 cut(s)	69, 250, 341
BstMAI	GTCTC	2 cut(s)	48, 86
BstMBI	GATC	3 cut(s)	66, 247, 338
BstNSI	RCATGY	1 cut(s)	469
BstPAI	GACNNNNGTC	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
BsuI	GTATCC	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	180, 265
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	2 cut(s)	34, 204
Cac8I	GCNNGC	1 cut(s)	467
CciI	TCATGA	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	401
CspAI	ACCGGT	1 cut(s)	95
CviAII	CATG	3 cut(s)	188, 224, 466
CviJI	RGCY	4 cut(s)	17, 180, 215, 265
CviKI_1	RGCY	4 cut(s)	17, 180, 215, 265
DdeI	CTNAG	3 cut(s)	18, 47, 123
DpnI	GATC	3 cut(s)	68, 249, 340
DpnII	GATC	3 cut(s)	66, 247, 338
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	181
Eco147I	AGGCCT	1 cut(s)	265
Eco31I	GGTCTC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	3 cut(s)	191, 227, 469
FaiI	YATR	9 cut(s)	71, 168, 189, 225, 344, 419, 442, 444, 467
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FatI	CATG	3 cut(s)	187, 223, 465
FauI	CCCGC	1 cut(s)	188
FauNDI	CATATG	1 cut(s)	442
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	180, 265
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	3 cut(s)	191, 227, 469
HinfI	GANTC	3 cut(s)	111, 127, 421
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	4 cut(s)	188, 290, 336, 364
HpyAV	CCTTC	2 cut(s)	34, 185
HpyCH4III	ACNGT	2 cut(s)	208, 394
HpyCH4V	TGCA	1 cut(s)	238
HpyF3I	CTNAG	3 cut(s)	18, 47, 123
Hsp92II	CATG	3 cut(s)	191, 227, 469
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	66, 247, 338
LmnI	GCTCC	2 cut(s)	220, 329
LpnPI	CCDG	9 cut(s)	22, 109, 140, 243, 264, 312, 369, 384, 441
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	2 cut(s)	341, 436
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	3 cut(s)	68, 249, 340
MboI	GATC	3 cut(s)	66, 247, 338
MboII	GAAGA	3 cut(s)	212, 379, 448
MflI	RGATCY	1 cut(s)	338
MluCI	AATT	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	411
MseI	TTAA	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	1 cut(s)	96
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	3 cut(s)	66, 247, 338
NlaIII	CATG	3 cut(s)	191, 227, 469
NspI	RCATGY	1 cut(s)	469
PaeI	GCATGC	1 cut(s)	469
PagI	TCATGA	1 cut(s)	187
PceI	AGGCCT	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	127, 421
PinAI	ACCGGT	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PshAI	GACNNNNGTC	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	3 cut(s)	66, 247, 338
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	1 cut(s)	120
SetI	ASST	7 cut(s)	19, 45, 187, 217, 276, 358, 391
SfaNI	GCATC	2 cut(s)	341, 436
SinI	GGWCC	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	469
Sse9I	AATT	1 cut(s)	135
SseBI	AGGCCT	1 cut(s)	265
SsiI	CCGC	1 cut(s)	195
StuI	AGGCCT	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	2 cut(s)	208, 394
TaqI	TCGA	2 cut(s)	210, 352
TasI	AATT	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	127, 421
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	2 cut(s)	41, 211
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	3 cut(s)	204, 212, 434
TspRI	CASTG	2 cut(s)	41, 211
VpaK11BI	GGWCC	1 cut(s)	401
XceI	RCATGY	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.