Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004210

Physical Location & Seq

Genomic Coordinates Reverse (-)

21295306 .. 21296495

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g20930.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGTTGGAAAGCGGCTGAGAAACTCATTAGGCACTGGAAGATTCTCAGAGGAGATAATGTGATGATAACAAGAGGCAAAGACAGGGGCGAGACTGGTGTCATCAAGCGAGTCATTCGCTCTCAGAATCGTGTCATCATAGAGGGAAAAAATCTGGTAAAGAAACATATCAAGCAAGGCCAAGGTCATGAAGGTGGGATTTTTACTGTCGAAGCGCCTCTCCATGCCTCAAACGTTCAAGTTGTTGATCCAGTGACAGGGAGGTCTGTTAAGGTTGGTGTGAGATATCTCGAGGATGGAACGAAAGTTCGAGTATCTAGGGGATTAGGCGCGTCGGGATCTATAATCCCTCGTCCTGAGATATTGAAGATAAGGACTACTCCAAGACCTACAGTTGCTGGCCCCAAGGACACTCCGATAGATGTCGTGTTCGAGAAGACTTACAATGCTAAGACGGGGAAGGGCATGCCTGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

160

Amino Acids

17.49

Weight (kDa)

10.49

Isoelectric Point (pI)

27.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23535 AT5G23535
fragaria_vesca	FvH4_2g23200
malus_domestica	MD03G1261300.v1.1 MD11G1281700.v1.1
prunus_persica	Prupe.1G577100_v2.0.a1 Prupe.1G577100_v2.0.a1 Prupe.8G237600_v2.0.a1 Prupe.8G237600_v2.0.a1
pyrus_communis	pycom03g20930 pycom11g24980
rosa_chinensis	RchiOBHm_Chr1g0329981 RchiOBHm_Chr6g0290451
rosa_laevigata	RLG00000012214 RLG00000029859
rosa_multiflora	Rmu_sc0000499.1_g000005 Rmu_sc0002890.1_g000007 Rmu_sc0009365.1_g000007 Rmu_sc0009365.1_g000020
rosa_roxburghii	Rroxscaffold_7G00177050
rosa_rugosa	Rorug01G0083600 Rorug01G0083700 Rorug01G0083800 Rorug01G0083900 Rorug01G0085000 Rorug01G0085100 Rorug06G0212800
rosa_samantha	Rh1BG081000 Rh6CG336500 Rh6DG323400
rosa_wichuraiana	Rw0G022380 Rw1G008290 Rw6G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	262
AccII	CGCG	1 cut(s)	332
AciI	CCGC	1 cut(s)	14
AclI	AACGTT	1 cut(s)	234
AclWI	GGATC	2 cut(s)	242, 346
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	2 cut(s)	239, 367
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	2 cut(s)	242, 346
AlwNI	CAGNNNCTG	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	2 cut(s)	178, 400
AspLEI	GCGC	2 cut(s)	217, 332
AspS9I	GGNCC	1 cut(s)	401
AvaI	CYCGRG	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	443
BccI	CCATC	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	390
BfoI	RGCGCY	1 cut(s)	218
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	1 cut(s)	403
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	443
BsaJI	CCNNGG	2 cut(s)	181, 405
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	3 cut(s)	41, 100, 251
BseDI	CCNNGG	2 cut(s)	181, 405
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMII	CTCAG	4 cut(s)	9, 61, 137, 348
BseNI	ACTGG	3 cut(s)	41, 100, 251
BseRI	GAGGAG	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	2 cut(s)	180, 402
BsiHKCI	CYCGRG	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	180, 402
BsoBI	CYCGRG	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	247, 338
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	2 cut(s)	180, 402
BspCNI	CTCAG	4 cut(s)	10, 60, 136, 349
BspFNI	CGCG	1 cut(s)	332
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	403
BspPI	GGATC	2 cut(s)	242, 346
BsrI	ACTGG	3 cut(s)	41, 100, 251
BssECI	CCNNGG	2 cut(s)	181, 405
BssMI	GATC	2 cut(s)	247, 338
BssT1I	CCWWGG	2 cut(s)	181, 405
Bst4CI	ACNGT	2 cut(s)	208, 394
BstC8I	GCNNGC	2 cut(s)	400, 467
BstDEI	CTNAG	5 cut(s)	18, 47, 123, 357, 450
BstF5I	GGATG	1 cut(s)	301
BstFNI	CGCG	1 cut(s)	332
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	2 cut(s)	217, 332
BstKTI	GATC	2 cut(s)	250, 341
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	2 cut(s)	247, 338
BstNSI	RCATGY	1 cut(s)	469
BstPAI	GACNNNNGTC	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	390
BstUI	CGCG	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	180, 402
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	2 cut(s)	34, 258
Cac8I	GCNNGC	2 cut(s)	400, 467
CaiI	CAGNNNCTG	1 cut(s)	398
CciI	TCATGA	1 cut(s)	187
CfoI	GCGC	2 cut(s)	217, 332
Cfr13I	GGNCC	1 cut(s)	401
CseI	GACGC	1 cut(s)	321
CviAII	CATG	3 cut(s)	188, 224, 466
CviJI	RGCY	3 cut(s)	17, 180, 402
CviKI_1	RGCY	3 cut(s)	17, 180, 402
DdeI	CTNAG	5 cut(s)	18, 47, 123, 357, 450
DpnI	GATC	2 cut(s)	249, 340
DpnII	GATC	2 cut(s)	247, 338
DrdI	GACNNNNNNGTC	1 cut(s)	262
DseDI	GACNNNNNNGTC	1 cut(s)	262
Eco130I	CCWWGG	2 cut(s)	181, 405
Eco32I	GATATC	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	290
EcoRV	GATATC	1 cut(s)	287
EcoT14I	CCWWGG	2 cut(s)	181, 405
ErhI	CCWWGG	2 cut(s)	181, 405
FaeI	CATG	3 cut(s)	191, 227, 469
FaiI	YATR	6 cut(s)	140, 168, 189, 225, 344, 467
FatI	CATG	3 cut(s)	187, 223, 465
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	2 cut(s)	216, 331
GluI	GCNGC	1 cut(s)	15
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	2 cut(s)	180, 402
HgaI	GACGC	1 cut(s)	321
HhaI	GCGC	2 cut(s)	217, 332
Hin1II	CATG	3 cut(s)	191, 227, 469
Hin6I	GCGC	2 cut(s)	215, 330
HinP1I	GCGC	2 cut(s)	215, 330
HinfI	GANTC	3 cut(s)	43, 111, 127
Hpy188I	TCNGA	3 cut(s)	50, 126, 417
Hpy188III	TCNNGA	5 cut(s)	188, 290, 336, 356, 433
Hpy99I	CGWCG	1 cut(s)	337
HpyAV	CCTTC	2 cut(s)	185, 454
HpyCH4III	ACNGT	2 cut(s)	208, 394
HpyCH4IV	ACGT	1 cut(s)	234
HpyF3I	CTNAG	5 cut(s)	18, 47, 123, 357, 450
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	3 cut(s)	191, 227, 469
HspAI	GCGC	2 cut(s)	215, 330
Kzo9I	GATC	2 cut(s)	247, 338
LpnPI	CCDG	8 cut(s)	22, 70, 81, 140, 243, 264, 369, 384
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	2 cut(s)	249, 340
MboI	GATC	2 cut(s)	247, 338
MboII	GAAGA	3 cut(s)	52, 379, 448
MflI	RGATCY	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	8 cut(s)	44, 68, 136, 228, 238, 255, 286, 360
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	192
MvnI	CGCG	1 cut(s)	332
NdeII	GATC	2 cut(s)	247, 338
NlaIII	CATG	3 cut(s)	191, 227, 469
NlaIV	GGNNCC	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	469
PaeI	GCATGC	1 cut(s)	469
PaeR7I	CTCGAG	1 cut(s)	290
PagI	TCATGA	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	43, 127
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PshAI	GACNNNNGTC	1 cut(s)	98
Psp1406I	AACGTT	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	401
PstNI	CAGNNNCTG	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	338
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	247, 338
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	1 cut(s)	120
SetI	ASST	6 cut(s)	187, 196, 237, 266, 276, 391
SfcI	CTRYAG	1 cut(s)	390
Sfr274I	CTCGAG	1 cut(s)	290
SlaI	CTCGAG	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	469
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	318
StyI	CCWWGG	2 cut(s)	181, 405
TaaI	ACNGT	2 cut(s)	208, 394
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	4 cut(s)	210, 291, 310, 432
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	43, 127
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	2 cut(s)	41, 258
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	2 cut(s)	41, 258
XceI	RCATGY	1 cut(s)	469
XhoI	CTCGAG	1 cut(s)	290
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.