Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004210

Physical Location & Seq

Genomic Coordinates Reverse (-)

13637014 .. 13642608

Gene Structure 5595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0083900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAGGAAGAAGCTCGATACGCGTTTCCCCGCTGCCCGGATCAAAAAAATTATGCAAGCTGATGAGGATGTTGGCAAGATAGCATTAGCAGTGCCCGTTTTAGTTTCTAAAGCATTAGAGTTATTTTTACAAGACCTTTGTGACCGTACATACGAGATAACTCTCCAAAGAGGAGCTAAAACCATGAATTCAGTGCATCTAAAACATTGTGTACAGAGCTACAATGTGTTTGATTTTCTAAGGGACATTGTCAGTAGGGTGCCTGACTATGGTCATGGTCATTCTGATGCTGCTGCTGATGATCGAGCCATCACAAAGAGAAGAAAACCACCAGGTGATGAATGCATTGACAGTGACGAGGAGTTGAAGAGGAGCAAGATGCTTGAGGTGAGCCATGGAAGCAGTAGTGGCAGGGGAAGAGGACGGGGTCGAGGACGAGGCCGTGGACGCGGTGCTCGAACTACTGAAAGAGAGCCTGTGCATCATGAGACTGAATCTGAACCCTGCACATCTCTTCAGCAGAGCAGCAAACCTAATATAAACCCTGCTATGGCGGTGGACGATGTTTCTGAGTCAAAGGAGTTATTGAAGGAAAATGTAAGTGTCCCTGATGAATCTGATCCGACAGTTCGAAATTTTGACTTGAATGCTGATGTACATGAGAATGAGGACACAAAAGCTGCAGCGGCAGCAGCCCAAGCCTCATCCGCGGCAGCAGCCCAAGCCTCATCCGCTGCACCTACTTCTGAGACTAAACATGAAGAATACCCAGGATGGTCTCTTTCAGACGTGGACAAAATGGCCATTGACCCTCTTCAACTTGCACAAATGAGCAAAAGGCTGGACGAGGATGAGGAAGACTATGACGAAGAGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

292

Amino Acids

32.17

Weight (kDa)

5.24

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	8 - 71	3.8e-19	Histone-like transcription factor (CBF/NF-Y) and archaeal histone
EBNA2_Core	PF25698	119 - 188	9.1e-06	EBNA-2 core transactivation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23535 AT5G23535
fragaria_vesca	FvH4_2g23200
malus_domestica	MD03G1261300.v1.1 MD11G1281700.v1.1
prunus_persica	Prupe.1G577100_v2.0.a1 Prupe.1G577100_v2.0.a1 Prupe.8G237600_v2.0.a1 Prupe.8G237600_v2.0.a1
pyrus_communis	pycom03g20930 pycom11g24980
rosa_chinensis	RchiOBHm_Chr1g0329981 RchiOBHm_Chr6g0290451
rosa_laevigata	RLG00000012214 RLG00000029859
rosa_multiflora	Rmu_sc0000499.1_g000005 Rmu_sc0002890.1_g000007 Rmu_sc0009365.1_g000007 Rmu_sc0009365.1_g000020
rosa_roxburghii	Rroxscaffold_7G00177050
rosa_rugosa	Rorug01G0083600 Rorug01G0083700 Rorug01G0083800 Rorug01G0083900 Rorug01G0085000 Rorug01G0085100 Rorug06G0212800
rosa_samantha	Rh1BG081000 Rh6CG336500 Rh6DG323400
rosa_wichuraiana	Rw0G022380 Rw1G008290 Rw6G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	259
AccII	CGCG	3 cut(s)	22, 450, 710
AciI	CCGC	7 cut(s)	30, 450, 554, 686, 708, 710, 732
AclWI	GGATC	2 cut(s)	47, 614
AcoI	YGGCCR	1 cut(s)	801
AcsI	RAATTY	2 cut(s)	187, 634
AcuI	CTGAAG	1 cut(s)	500
AdeI	CACNNNGTG	1 cut(s)	335
AfaI	GTAC	3 cut(s)	148, 213, 657
AfiI	CCNNNNNNNGG	3 cut(s)	36, 269, 550
AflIII	ACRYGT	1 cut(s)	20
AgsI	TTSAA	4 cut(s)	367, 589, 646, 818
AjiI	CACGTC	1 cut(s)	790
AjnI	CCWGG	2 cut(s)	331, 769
AluBI	AGCT	5 cut(s)	13, 59, 176, 219, 680
AluI	AGCT	5 cut(s)	13, 59, 176, 219, 680
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	3 cut(s)	482, 743, 783
AlwI	GGATC	2 cut(s)	47, 614
AoxI	GGCC	2 cut(s)	439, 801
ApoI	RAATTY	2 cut(s)	187, 634
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	347, 400
AsuII	TTCGAA	1 cut(s)	631
BaeGI	GKGCMC	1 cut(s)	96
BalI	TGGCCA	1 cut(s)	803
BanI	GGYRCC	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	864
Bbv12I	GWGCWC	1 cut(s)	457
BccI	CCATC	2 cut(s)	317, 768
BceAI	ACGGC	1 cut(s)	426
BciT130I	CCWGG	2 cut(s)	333, 771
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	3 cut(s)	482, 743, 783
BfmI	CTRYAG	1 cut(s)	681
Bme1390I	CCNGG	3 cut(s)	37, 333, 771
BmgBI	CACGTC	1 cut(s)	790
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	3 cut(s)	37, 333, 771
BmsI	GCATC	4 cut(s)	205, 277, 369, 490
BoxI	GACNNNNGTC	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	864
Bpu14I	TTCGAA	1 cut(s)	631
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	783
BsaJI	CCNNGG	4 cut(s)	394, 442, 708, 769
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 269, 550
BseBI	CCWGG	2 cut(s)	333, 771
BseDI	CCNNGG	4 cut(s)	394, 442, 708, 769
BseGI	GGATG	5 cut(s)	73, 704, 728, 779, 856
BseLI	CCNNNNNNNGG	3 cut(s)	36, 269, 550
BseMII	CTCAG	2 cut(s)	561, 738
BseRI	GAGGAG	3 cut(s)	186, 374, 385
BseSI	GKGCMC	1 cut(s)	96
BsgI	GTGCAG	2 cut(s)	490, 720
Bsh1236I	CGCG	3 cut(s)	22, 450, 710
BshFI	GGCC	2 cut(s)	441, 803
BshNI	GGYRCC	1 cut(s)	259
BsiHKAI	GWGCWC	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	37
BslFI	GGGAC	2 cut(s)	257, 590
BslI	CCNNNNNNNGG	3 cut(s)	36, 269, 550
BsmAI	GTCTC	3 cut(s)	482, 743, 783
BsmFI	GGGAC	2 cut(s)	257, 590
BsmI	GAATGC	2 cut(s)	347, 652
BsnI	GGCC	2 cut(s)	441, 803
Bso31I	GGTCTC	1 cut(s)	783
Bsp119I	TTCGAA	1 cut(s)	631
Bsp1286I	GDGCHC	2 cut(s)	96, 457
Bsp1407I	TGTACA	2 cut(s)	211, 655
Bsp143I	GATC	3 cut(s)	39, 301, 619
Bsp19I	CCATGG	1 cut(s)	394
BspACI	CCGC	7 cut(s)	30, 450, 554, 686, 708, 710, 732
BspANI	GGCC	2 cut(s)	441, 803
BspCNI	CTCAG	2 cut(s)	562, 739
BspFNI	CGCG	3 cut(s)	22, 450, 710
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	1 cut(s)	261
BspMAI	CTGCAG	1 cut(s)	685
BspPI	GGATC	2 cut(s)	47, 614
BspT104I	TTCGAA	1 cut(s)	631
BspT107I	GGYRCC	1 cut(s)	259
BspTNI	GGTCTC	1 cut(s)	783
BsrGI	TGTACA	2 cut(s)	211, 655
BssECI	CCNNGG	4 cut(s)	394, 442, 708, 769
BssMI	GATC	3 cut(s)	39, 301, 619
BssT1I	CCWWGG	1 cut(s)	394
Bst2UI	CCWGG	2 cut(s)	333, 771
Bst4CI	ACNGT	3 cut(s)	146, 353, 628
Bst6I	CTCTTC	5 cut(s)	362, 412, 519, 819, 864
BstAUI	TGTACA	2 cut(s)	211, 655
BstBI	TTCGAA	1 cut(s)	631
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	3 cut(s)	239, 570, 747
BstDSI	CCRYGG	3 cut(s)	394, 442, 708
BstF5I	GGATG	5 cut(s)	73, 704, 728, 779, 856
BstFNI	CGCG	3 cut(s)	22, 450, 710
BstKTI	GATC	3 cut(s)	42, 304, 622
BstMAI	GTCTC	3 cut(s)	482, 743, 783
BstMBI	GATC	3 cut(s)	39, 301, 619
BstNI	CCWGG	2 cut(s)	333, 771
BstPAI	GACNNNNGTC	1 cut(s)	270
BstSCI	CCNGG	3 cut(s)	35, 331, 769
BstSFI	CTRYAG	1 cut(s)	681
BstSLI	GKGCMC	1 cut(s)	96
BstUI	CGCG	3 cut(s)	22, 450, 710
BstV2I	GAAGAC	1 cut(s)	864
BsuRI	GGCC	2 cut(s)	441, 803
BtgI	CCRYGG	3 cut(s)	394, 442, 708
BtrI	CACGTC	1 cut(s)	790
BtsCI	GGATG	5 cut(s)	73, 704, 728, 779, 856
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	3 cut(s)	96, 198, 358
Cac8I	GCNNGC	1 cut(s)	57
CciI	TCATGA	1 cut(s)	484
Cfr42I	CCGCGG	1 cut(s)	711
CseI	GACGC	1 cut(s)	456
CsiI	ACCWGGT	1 cut(s)	331
Csp6I	GTAC	3 cut(s)	147, 212, 656
CviAII	CATG	6 cut(s)	184, 275, 395, 485, 659, 758
CviQI	GTAC	3 cut(s)	147, 212, 656
DdeI	CTNAG	3 cut(s)	239, 570, 747
DpnI	GATC	3 cut(s)	41, 303, 621
DpnII	GATC	3 cut(s)	39, 301, 619
DraIII	CACNNNGTG	1 cut(s)	335
EaeI	YGGCCR	1 cut(s)	801
Eam1104I	CTCTTC	5 cut(s)	362, 412, 519, 819, 864
EarI	CTCTTC	5 cut(s)	362, 412, 519, 819, 864
Eco130I	CCWWGG	1 cut(s)	394
Eco31I	GGTCTC	1 cut(s)	783
Eco57I	CTGAAG	1 cut(s)	500
EcoRI	GAATTC	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	331, 769
EcoT14I	CCWWGG	1 cut(s)	394
EcoT22I	ATGCAT	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	6 cut(s)	187, 278, 398, 488, 662, 761
FaqI	GGGAC	2 cut(s)	257, 590
FatI	CATG	6 cut(s)	183, 274, 394, 484, 658, 757
FauI	CCCGC	1 cut(s)	37
FokI	GGATG	5 cut(s)	80, 691, 715, 786, 863
HaeIII	GGCC	2 cut(s)	441, 803
HapII	CCGG	1 cut(s)	37
HgaI	GACGC	1 cut(s)	456
Hin1II	CATG	6 cut(s)	187, 278, 398, 488, 662, 761
HinfI	GANTC	3 cut(s)	494, 572, 614
HpaII	CCGG	1 cut(s)	37
HphI	GGTGA	2 cut(s)	347, 400
Hpy166II	GTNNAC	4 cut(s)	212, 446, 559, 793
Hpy188I	TCNGA	7 cut(s)	286, 499, 571, 619, 624, 748, 787
Hpy188III	TCNNGA	1 cut(s)	485
Hpy8I	GTNNAC	4 cut(s)	212, 446, 559, 793
HpyAV	CCTTC	1 cut(s)	583
HpyCH4III	ACNGT	3 cut(s)	146, 353, 628
HpyCH4IV	ACGT	1 cut(s)	789
HpyCH4V	TGCA	8 cut(s)	55, 196, 345, 481, 507, 683, 737, 824
HpyF3I	CTNAG	3 cut(s)	239, 570, 747
HpySE526I	ACGT	1 cut(s)	789
Hsp92II	CATG	6 cut(s)	187, 278, 398, 488, 662, 761
KspI	CCGCGG	1 cut(s)	711
Kzo9I	GATC	3 cut(s)	39, 301, 619
LmnI	GCTCC	2 cut(s)	173, 372
LweI	GCATC	4 cut(s)	205, 277, 369, 490
MabI	ACCWGGT	1 cut(s)	331
MaeII	ACGT	1 cut(s)	789
MaeIII	GTNAC	2 cut(s)	140, 353
MalI	GATC	3 cut(s)	41, 303, 621
MboI	GATC	3 cut(s)	39, 301, 619
MboII	GAAGA	8 cut(s)	19, 333, 379, 429, 506, 773, 806, 869
MhlI	GDGCHC	2 cut(s)	96, 457
MlsI	TGGCCA	1 cut(s)	803
MluCI	AATT	3 cut(s)	48, 187, 634
MluI	ACGCGT	1 cut(s)	20
MluNI	TGGCCA	1 cut(s)	803
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	647
Mox20I	TGGCCA	1 cut(s)	803
Mph1103I	ATGCAT	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	803
MslI	CAYNNNNRTG	2 cut(s)	285, 663
Msp20I	TGGCCA	1 cut(s)	803
MspA1I	CMGCKG	4 cut(s)	32, 686, 710, 734
MspI	CCGG	1 cut(s)	37
MspR9I	CCNGG	3 cut(s)	37, 333, 771
Mva1269I	GAATGC	2 cut(s)	347, 652
MvaI	CCWGG	2 cut(s)	333, 771
MvnI	CGCG	3 cut(s)	22, 450, 710
NciI	CCSGG	1 cut(s)	37
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	3 cut(s)	39, 301, 619
NlaIII	CATG	6 cut(s)	187, 278, 398, 488, 662, 761
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	2 cut(s)	140, 353
NsiI	ATGCAT	1 cut(s)	347
NspV	TTCGAA	1 cut(s)	631
PagI	TCATGA	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	1 cut(s)	454
PctI	GAATGC	2 cut(s)	347, 652
PfeI	GAWTC	2 cut(s)	494, 614
PflFI	GACNNNGTC	2 cut(s)	248, 426
PleI	GAGTC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	580
PshAI	GACNNNNGTC	1 cut(s)	270
Psp6I	CCWGG	2 cut(s)	331, 769
PspGI	CCWGG	2 cut(s)	331, 769
PspN4I	GGNNCC	1 cut(s)	261
PstI	CTGCAG	1 cut(s)	685
PsyI	GACNNNGTC	2 cut(s)	248, 426
RsaI	GTAC	3 cut(s)	148, 213, 657
RsaNI	GTAC	3 cut(s)	147, 212, 656
RseI	CAYNNNNRTG	2 cut(s)	285, 663
SacII	CCGCGG	1 cut(s)	711
Sau3AI	GATC	3 cut(s)	39, 301, 619
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	3 cut(s)	37, 333, 771
SduI	GDGCHC	2 cut(s)	96, 457
SexAI	ACCWGGT	1 cut(s)	331
SfaNI	GCATC	4 cut(s)	205, 277, 369, 490
SfcI	CTRYAG	1 cut(s)	681
Sfr303I	CCGCGG	1 cut(s)	711
SfuI	TTCGAA	1 cut(s)	631
SgrBI	CCGCGG	1 cut(s)	711
SmiMI	CAYNNNNRTG	2 cut(s)	285, 663
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	3 cut(s)	48, 187, 634
SsiI	CCGC	7 cut(s)	30, 450, 554, 686, 708, 710, 732
StyD4I	CCNGG	3 cut(s)	35, 331, 769
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	3 cut(s)	146, 353, 628
TaiI	ACGT	1 cut(s)	792
TaqI	TCGA	5 cut(s)	15, 304, 430, 457, 631
TasI	AATT	3 cut(s)	48, 187, 634
TatI	WGTACW	2 cut(s)	211, 655
TauI	GCSGC	2 cut(s)	689, 713
TfiI	GAWTC	2 cut(s)	494, 614
TscAI	CASTG	3 cut(s)	96, 198, 358
TseFI	GTSAC	2 cut(s)	140, 353
Tsp45I	GTSAC	2 cut(s)	140, 353
TspDTI	ATGAA	4 cut(s)	200, 354, 627, 774
TspRI	CASTG	3 cut(s)	96, 198, 358
Tth111I	GACNNNGTC	2 cut(s)	248, 426
XapI	RAATTY	2 cut(s)	187, 634
Zsp2I	ATGCAT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.