Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004210

Physical Location & Seq

Genomic Coordinates Forward (+)

13634610 .. 13635683

Gene Structure 1074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0083800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTATGGCGTTATTGAAGAATTTTTGCAAAGTCACAACAACATCATTCCAATAAGGTACTCCTACTCAGAAATCAAGAAAATGACCAAAGGATTTGAGGAAAAATTGGGGGAAGGAGGTTATGGCTCTGTGTATAAAGGAAAGCTCCGGAGCGGTCGCCTTGTTGCTGTTAAGATGTTGGGAACATCAAAAGCTAACGGGCAAGATTTTATTAATGAAGTTGCTACAATAGGAAGGATTCATCATGTAAATGTGGTGCAACTAATTGGCTACTGTGCTGAGGGATCAAAGCGTGCTCTTTTATATGAGTATATGTCAAATGGCTCTTTGGATAAACACATATTTCCTAAACAAGGAATCATCTCTTTAAGTTGCAGAGAAGCATTTCAAATTGCACTTGGAGTGGCTCGTGGTATTGACTACTTACATCAAGGATGTGACATGAAAATTTTGCATTTCGATATCAAGCCACACAACATTCTTCTTGATGATAACTTTGTTCCAAAGATTTCTGACTTTGGGCTAGCAAGATTATGTCCATTAGATGACAGTAGTTTAACTATGACTGCTGCAAGAGGAACCCTTGGATACATGGCTCCAGAACTGTTTTACAAAAATATAGGAGGTGTCTCGAGCAAAGCTGACATCTATAGTTTCGGAATGTTGCTGATGGAAATTGCAGGAAGAAGGAAGAACGTGAATGCTGGTGCAGCCCATTCGAGCCAAATTTACTTTCCTTCTTGGGTCTACGACCAATTCAATGAAGGAAAGGACATAGACATGGGAGATACCACTGAGGACGAAAAGTTAATAATAAAAAAGATGGTTATCGTCGCATTATGGTGCATACAAATGAAGCCTAGTGATCGTCCTAATTCAATGAACAAAGTGGTAGAGATGCTTGAAGGAGATATTGAACGCCTTCAAATGCCCCCAAAGCCTCTCCTATATCCAGAACACAAGTCAATAGTGGATGATGAAGACAATTCAGATACACCATGGTCATCGACACTGTCGGGTCATGATTCTATACAGTCGGCTAGCTTACTTCAAAATGAAGGTGAAGTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

357

Amino Acids

39.85

Weight (kDa)

5.84

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	32 - 299	1.2e-43	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	33 - 294	1.6e-45	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23535 AT5G23535
fragaria_vesca	FvH4_2g23200
malus_domestica	MD03G1261300.v1.1 MD11G1281700.v1.1
prunus_persica	Prupe.1G577100_v2.0.a1 Prupe.1G577100_v2.0.a1 Prupe.8G237600_v2.0.a1 Prupe.8G237600_v2.0.a1
pyrus_communis	pycom03g20930 pycom11g24980
rosa_chinensis	RchiOBHm_Chr1g0329981 RchiOBHm_Chr6g0290451
rosa_laevigata	RLG00000012214 RLG00000029859
rosa_multiflora	Rmu_sc0000499.1_g000005 Rmu_sc0002890.1_g000007 Rmu_sc0009365.1_g000007 Rmu_sc0009365.1_g000020
rosa_roxburghii	Rroxscaffold_7G00177050
rosa_rugosa	Rorug01G0083600 Rorug01G0083700 Rorug01G0083800 Rorug01G0083900 Rorug01G0085000 Rorug01G0085100 Rorug06G0212800
rosa_samantha	Rh1BG081000 Rh6CG336500 Rh6DG323400
rosa_wichuraiana	Rw0G022380 Rw1G008290 Rw6G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	153
AccI	GTMKAC	1 cut(s)	747
AccIII	TCCGGA	1 cut(s)	147
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	1 cut(s)	292
AcsI	RAATTY	3 cut(s)	20, 447, 726
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	353
AgsI	TTSAA	8 cut(s)	17, 389, 760, 879, 905, 917, 926, 1052
AjuI	GAANNNNNNNTTGG	2 cut(s)	717, 749
AluBI	AGCT	4 cut(s)	145, 194, 641, 1044
AluI	AGCT	4 cut(s)	145, 194, 641, 1044
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	634
AlwI	GGATC	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	631
Aor13HI	TCCGGA	1 cut(s)	147
ApeKI	GCWGC	2 cut(s)	569, 710
ApoI	RAATTY	3 cut(s)	20, 447, 726
AseI	ATTAAT	1 cut(s)	213
Asp700I	GAANNNNTTC	2 cut(s)	384, 921
AsuHPI	GGTGA	1 cut(s)	1073
AsuNHI	GCTAGC	2 cut(s)	523, 1040
AvaI	CYCGRG	1 cut(s)	631
BauI	CACGAG	1 cut(s)	408
BbsI	GAAGAC	1 cut(s)	987
Bbv12I	GWGCWC	1 cut(s)	298
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	556, 722
BccI	CCATC	2 cut(s)	664, 817
BcgI	CGANNNNNNTGC	2 cut(s)	699, 733
BciVI	GTATCC	1 cut(s)	581
BcoDI	GTCTC	1 cut(s)	634
BfaI	CTAG	3 cut(s)	524, 861, 1041
BfmI	CTRYAG	1 cut(s)	649
BfuI	GTATCC	1 cut(s)	581
BisI	GCNGC	2 cut(s)	570, 711
BlsI	GCNGC	2 cut(s)	571, 712
BmeT110I	CYCGRG	1 cut(s)	631
BmiI	GGNNCC	2 cut(s)	580, 597
BmsI	GCATC	1 cut(s)	888
BmtI	GCTAGC	2 cut(s)	527, 1044
BpiI	GAAGAC	1 cut(s)	987
BpmI	CTGGAG	1 cut(s)	582
Bpu10I	CCTNAGC	1 cut(s)	279
BsaBI	GATNNNNATC	1 cut(s)	827
BsaJI	CCNNGG	2 cut(s)	583, 998
BsaWI	WCCGGW	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse8I	GATNNNNATC	1 cut(s)	827
BseAI	TCCGGA	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	583, 998
BseGI	GGATG	2 cut(s)	440, 979
BseJI	GATNNNNATC	1 cut(s)	827
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMII	CTCAG	3 cut(s)	81, 270, 786
BseXI	GCAGC	2 cut(s)	556, 722
BsgI	GTGCAG	1 cut(s)	729
Bsh1285I	CGRYCG	1 cut(s)	157
BsiEI	CGRYCG	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	298
BsiHKCI	CYCGRG	1 cut(s)	631
BsiSI	CCGG	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	1 cut(s)	634
BsmI	GAATGC	1 cut(s)	706
BsoBI	CYCGRG	1 cut(s)	631
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp13I	TCCGGA	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	284, 865
Bsp19I	CCATGG	1 cut(s)	998
BspACI	CCGC	1 cut(s)	153
BspCNI	CTCAG	3 cut(s)	80, 271, 787
BspEI	TCCGGA	1 cut(s)	147
BspHI	TCATGA	1 cut(s)	1021
BspLI	GGNNCC	2 cut(s)	580, 597
BspOI	GCTAGC	2 cut(s)	527, 1044
BspPI	GGATC	1 cut(s)	292
BsrBI	CCGCTC	1 cut(s)	153
BssECI	CCNNGG	2 cut(s)	583, 998
BssMI	GATC	2 cut(s)	284, 865
BssSI	CACGAG	1 cut(s)	408
BssT1I	CCWWGG	2 cut(s)	583, 998
Bst2BI	CACGAG	1 cut(s)	408
Bst4CI	ACNGT	5 cut(s)	275, 551, 606, 1014, 1035
BstC8I	GCNNGC	3 cut(s)	294, 525, 1042
BstDEI	CTNAG	3 cut(s)	67, 279, 795
BstDSI	CCRYGG	1 cut(s)	998
BstENI	CCTNNNNNAGG	1 cut(s)	351
BstF5I	GGATG	2 cut(s)	440, 979
BstKTI	GATC	2 cut(s)	287, 868
BstMAI	GTCTC	1 cut(s)	634
BstMBI	GATC	2 cut(s)	284, 865
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	710, 937
BstSFI	CTRYAG	1 cut(s)	649
BstV1I	GCAGC	2 cut(s)	556, 722
BstV2I	GAAGAC	1 cut(s)	987
BsuI	GTATCC	1 cut(s)	581
BtgI	CCRYGG	1 cut(s)	998
BtsCI	GGATG	2 cut(s)	440, 979
BtsIMutI	CAGTG	2 cut(s)	792, 1010
Cac8I	GCNNGC	3 cut(s)	294, 525, 1042
CciI	TCATGA	1 cut(s)	1021
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	6 cut(s)	245, 442, 592, 781, 999, 1022
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	3 cut(s)	67, 279, 795
DpnI	GATC	2 cut(s)	286, 867
DpnII	GATC	2 cut(s)	284, 865
Eco130I	CCWWGG	2 cut(s)	583, 998
Eco32I	GATATC	1 cut(s)	463
Eco88I	CYCGRG	1 cut(s)	631
EcoNI	CCTNNNNNAGG	1 cut(s)	351
EcoRV	GATATC	1 cut(s)	463
EcoT14I	CCWWGG	2 cut(s)	583, 998
ErhI	CCWWGG	2 cut(s)	583, 998
FaeI	CATG	6 cut(s)	248, 445, 595, 784, 1002, 1025
FatI	CATG	6 cut(s)	244, 441, 591, 780, 998, 1021
FblI	GTMKAC	1 cut(s)	747
Fnu4HI	GCNGC	2 cut(s)	570, 711
FokI	GGATG	2 cut(s)	447, 986
Fsp4HI	GCNGC	2 cut(s)	570, 711
FspBI	CTAG	3 cut(s)	524, 861, 1041
GluI	GCNGC	2 cut(s)	570, 711
GsuI	CTGGAG	1 cut(s)	582
HapII	CCGG	1 cut(s)	148
Hin1II	CATG	6 cut(s)	248, 445, 595, 784, 1002, 1025
HinfI	GANTC	3 cut(s)	238, 357, 1025
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	1 cut(s)	1073
Hpy166II	GTNNAC	1 cut(s)	748
Hpy188I	TCNGA	4 cut(s)	70, 514, 659, 991
Hpy188III	TCNNGA	7 cut(s)	76, 148, 485, 599, 631, 953, 1022
Hpy8I	GTNNAC	1 cut(s)	748
Hpy99I	CGWCG	1 cut(s)	836
HpyAV	CCTTC	8 cut(s)	107, 228, 681, 747, 758, 899, 932, 1052
HpyCH4III	ACNGT	5 cut(s)	275, 551, 606, 1014, 1035
HpyCH4IV	ACGT	1 cut(s)	696
HpyCH4V	TGCA	9 cut(s)	28, 259, 375, 395, 454, 572, 680, 710, 846
HpyF10VI	GCNNNNNNNGC	2 cut(s)	710, 937
HpyF3I	CTNAG	3 cut(s)	67, 279, 795
HpySE526I	ACGT	1 cut(s)	696
Hsp92II	CATG	6 cut(s)	248, 445, 595, 784, 1002, 1025
Kpn2I	TCCGGA	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	284, 865
LmnI	GCTCC	3 cut(s)	150, 150, 601
LpnPI	CCDG	5 cut(s)	161, 612, 666, 690, 966
Lsp1109I	GCAGC	2 cut(s)	556, 722
LweI	GCATC	1 cut(s)	888
MaeI	CTAG	3 cut(s)	524, 861, 1041
MaeII	ACGT	1 cut(s)	696
MaeIII	GTNAC	2 cut(s)	32, 437
MalI	GATC	2 cut(s)	286, 867
MbiI	CCGCTC	1 cut(s)	153
MboI	GATC	2 cut(s)	284, 865
MboII	GAAGA	5 cut(s)	29, 473, 696, 703, 992
MhlI	GDGCHC	1 cut(s)	298
MnlI	CCTC	7 cut(s)	91, 110, 274, 569, 617, 790, 951
MroI	TCCGGA	1 cut(s)	147
MroXI	GAANNNNTTC	2 cut(s)	384, 921
MseI	TTAA	5 cut(s)	171, 213, 368, 557, 809
MslI	CAYNNNNRTG	4 cut(s)	249, 779, 841, 851
MspI	CCGG	1 cut(s)	148
Mva1269I	GAATGC	1 cut(s)	706
MwoI	GCNNNNNNNGC	2 cut(s)	710, 937
NcoI	CCATGG	1 cut(s)	998
NdeII	GATC	2 cut(s)	284, 865
NheI	GCTAGC	2 cut(s)	523, 1040
NlaIII	CATG	6 cut(s)	248, 445, 595, 784, 1002, 1025
NlaIV	GGNNCC	2 cut(s)	580, 597
NmuCI	GTSAC	2 cut(s)	32, 437
PaeR7I	CTCGAG	1 cut(s)	631
PagI	TCATGA	1 cut(s)	1021
PctI	GAATGC	1 cut(s)	706
PdmI	GAANNNNTTC	2 cut(s)	384, 921
PfeI	GAWTC	3 cut(s)	238, 357, 1025
PflFI	GACNNNGTC	1 cut(s)	1012
PkrI	GCNGC	2 cut(s)	571, 712
PshBI	ATTAAT	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	580, 597
PsyI	GACNNNGTC	1 cut(s)	1012
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	4 cut(s)	249, 779, 841, 851
SaqAI	TTAA	5 cut(s)	171, 213, 368, 557, 809
SatI	GCNGC	2 cut(s)	570, 711
Sau3AI	GATC	2 cut(s)	284, 865
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	9 cut(s)	59, 121, 147, 196, 628, 643, 699, 1046, 1063
SfaNI	GCATC	1 cut(s)	888
SfcI	CTRYAG	1 cut(s)	649
Sfr274I	CTCGAG	1 cut(s)	631
SlaI	CTCGAG	1 cut(s)	631
SmiMI	CAYNNNNRTG	4 cut(s)	249, 779, 841, 851
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
SsiI	CCGC	1 cut(s)	153
SspMI	CTAG	3 cut(s)	524, 861, 1041
StyI	CCWWGG	2 cut(s)	583, 998
TaaI	ACNGT	5 cut(s)	275, 551, 606, 1014, 1035
TaiI	ACGT	1 cut(s)	699
TaqI	TCGA	4 cut(s)	459, 632, 719, 1007
TfiI	GAWTC	3 cut(s)	238, 357, 1025
Tru1I	TTAA	5 cut(s)	171, 213, 368, 557, 809
Tru9I	TTAA	5 cut(s)	171, 213, 368, 557, 809
TscAI	CASTG	2 cut(s)	799, 1017
TseFI	GTSAC	2 cut(s)	32, 437
TseI	GCWGC	2 cut(s)	569, 710
Tsp45I	GTSAC	2 cut(s)	32, 437
TspDTI	ATGAA	8 cut(s)	230, 231, 458, 777, 869, 896, 993, 1071
TspRI	CASTG	2 cut(s)	799, 1017
Tth111I	GACNNNGTC	1 cut(s)	1012
VspI	ATTAAT	1 cut(s)	213
XagI	CCTNNNNNAGG	1 cut(s)	351
XapI	RAATTY	3 cut(s)	20, 447, 726
XhoI	CTCGAG	1 cut(s)	631
XmiI	GTMKAC	1 cut(s)	747
XmnI	GAANNNNTTC	2 cut(s)	384, 921
XspI	CTAG	3 cut(s)	524, 861, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.