Rorug01G0083600

Belongs to the universal ribosomal protein uL24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004210
Physical Location & Seq
Reverse (-)
13617345 .. 13618442
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0083600.1

Sequence Viewer

Length: 492 bp
ATGAATGTTGACATTACTGCTCCAGAAATCCGTGAAGAAATGTATGCTGAAGTTCTTGGTAAGGAGAAGGGGAACAGAGTGAGAGGTGTTGGAGCAGGGGTTACTTGGGACGAAGTCCCTGGAATCCATGTTGAAGAGCGAGGAGTATCAAGAGAAGTGAAACAGTTGCGAGAGCAATTGGAAGAGCAAGCCAAAAAGGCACAAGAGAGAGAAGCACACATGATGGAGGAACTACAAAGCAAAATGGCTGAGCAAACAAAACGGATGGAACAATTGTTTGAAGTAAGATGCGTAGAGATGGCACTACAAAAAATGGGAGAGATGTTTAAACAATGCGGAATATCAGTGGATACACAAGAAGATGTCATGCAAACGATGTCTCAGTTTGCTCGTGACACGTCTCAAAGGCCATCGACTGTTGCTTTTTCACCAGATGATGATGTCTACCGTCCTACAATGCCATTTGATTGCCCCAATAGGCAAATTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KOW ribosomal_L24

Protein Analysis

163

Amino Acids

18.79

Weight (kDa)

4.84

Isoelectric Point (pI)

55.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 444
AciI CCGC 1 cut(s) 336
AcuI CTGAAG 1 cut(s) 69
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 2 cut(s) 134, 281
AjiI CACGTC 1 cut(s) 399
AjnI CCWGG 1 cut(s) 118
Alw26I GTCTC 2 cut(s) 384, 405
AoxI GGCC 1 cut(s) 407
AsuHPI GGTGA 1 cut(s) 420
BauI CACGAG 1 cut(s) 390
BccI CCATC 4 cut(s) 217, 259, 292, 418
BciT130I CCWGG 1 cut(s) 120
BciVI GTATCC 1 cut(s) 343
BcoDI GTCTC 2 cut(s) 384, 405
BfuI GTATCC 1 cut(s) 343
BglI GCCNNNNNGGC 1 cut(s) 197
BlpI GCTNAGC 1 cut(s) 249
Bme1390I CCNGG 1 cut(s) 120
BmgBI CACGTC 1 cut(s) 399
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 1 cut(s) 278
BpmI CTGGAG 1 cut(s) 6
Bpu1102I GCTNAGC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 270
BseMII CTCAG 2 cut(s) 240, 395
BseRI GAGGAG 1 cut(s) 156
BshFI GGCC 1 cut(s) 409
BslFI GGGAC 2 cut(s) 101, 122
BsmAI GTCTC 2 cut(s) 384, 405
BsmBI CGTCTC 1 cut(s) 405
BsmFI GGGAC 2 cut(s) 101, 122
BsnI GGCC 1 cut(s) 409
Bsp1720I GCTNAGC 1 cut(s) 249
BspACI CCGC 1 cut(s) 336
BspANI GGCC 1 cut(s) 409
BspCNI CTCAG 2 cut(s) 241, 394
BspQI GCTCTTC 2 cut(s) 129, 177
BssECI CCNNGG 1 cut(s) 118
BssSI CACGAG 1 cut(s) 390
Bst2BI CACGAG 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 3 cut(s) 165, 418, 449
Bst6I CTCTTC 2 cut(s) 129, 177
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 249, 381
BstF5I GGATG 1 cut(s) 270
BstMAI GTCTC 2 cut(s) 384, 405
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BsuI GTATCC 1 cut(s) 343
BsuRI GGCC 1 cut(s) 409
BtrI CACGTC 1 cut(s) 399
BtsCI GGATG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 1 cut(s) 189
CviAII CATG 3 cut(s) 128, 220, 367
CviJI RGCY 3 cut(s) 191, 248, 409
CviKI_1 RGCY 3 cut(s) 191, 248, 409
DdeI CTNAG 2 cut(s) 249, 381
DraI TTTAAA 1 cut(s) 328
Eam1104I CTCTTC 2 cut(s) 129, 177
EarI CTCTTC 2 cut(s) 129, 177
Eco57I CTGAAG 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 118
Esp3I CGTCTC 1 cut(s) 405
FaeI CATG 3 cut(s) 131, 223, 370
FaiI YATR 4 cut(s) 45, 129, 221, 368
FaqI GGGAC 2 cut(s) 101, 122
FatI CATG 3 cut(s) 127, 219, 366
FblI GTMKAC 1 cut(s) 444
FokI GGATG 1 cut(s) 277
GsuI CTGGAG 1 cut(s) 6
HaeIII GGCC 1 cut(s) 409
Hin1II CATG 3 cut(s) 131, 223, 370
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HinfI GANTC 1 cut(s) 123
HphI GGTGA 1 cut(s) 420
Hpy166II GTNNAC 2 cut(s) 10, 445
Hpy188III TCNNGA 3 cut(s) 23, 150, 392
Hpy8I GTNNAC 2 cut(s) 10, 445
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 3 cut(s) 165, 418, 449
HpyCH4IV ACGT 1 cut(s) 398
HpyCH4V TGCA 1 cut(s) 370
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 2 cut(s) 249, 381
HpySE526I ACGT 1 cut(s) 398
Hsp92II CATG 3 cut(s) 131, 223, 370
LguI GCTCTTC 2 cut(s) 129, 177
LmnI GCTCC 2 cut(s) 25, 92
LpnPI CCDG 5 cut(s) 36, 81, 105, 132, 444
LweI GCATC 1 cut(s) 278
MaeII ACGT 1 cut(s) 398
MaeIII GTNAC 2 cut(s) 100, 392
MboII GAAGA 4 cut(s) 47, 146, 194, 371
MfeI CAATTG 2 cut(s) 176, 272
MluCI AATT 3 cut(s) 176, 272, 483
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 3 cut(s) 77, 134, 220
MseI TTAA 2 cut(s) 327, 490
MspR9I CCNGG 1 cut(s) 120
MssI GTTTAAAC 1 cut(s) 328
MunI CAATTG 2 cut(s) 176, 272
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 197
NlaIII CATG 3 cut(s) 131, 223, 370
NmuCI GTSAC 1 cut(s) 392
PciSI GCTCTTC 2 cut(s) 129, 177
PfeI GAWTC 1 cut(s) 123
PflFI GACNNNGTC 1 cut(s) 113
PmeI GTTTAAAC 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PsyI GACNNNGTC 1 cut(s) 113
SapI GCTCTTC 2 cut(s) 129, 177
SaqAI TTAA 2 cut(s) 327, 490
ScrFI CCNGG 1 cut(s) 120
SetI ASST 2 cut(s) 88, 401
SfaNI GCATC 1 cut(s) 278
Sse9I AATT 3 cut(s) 176, 272, 483
SsiI CCGC 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 3 cut(s) 165, 418, 449
TaiI ACGT 1 cut(s) 401
TaqI TCGA 1 cut(s) 413
TasI AATT 3 cut(s) 176, 272, 483
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 2 cut(s) 327, 490
Tru9I TTAA 2 cut(s) 327, 490
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 1 cut(s) 392
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 20, 277
TspRI CASTG 1 cut(s) 351
Tth111I GACNNNGTC 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.