Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004210

Physical Location & Seq

Genomic Coordinates Reverse (-)

20964194 .. 20966656

Gene Structure 2463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G237600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGTTGGAAAGCGGCTGAGAAACTGATTAGGCACTGGAAGGTTCTCAGAGGAGATAATGTGATGATAATAAGGGGCAAAGACAAGGGTGATACAGGTATTATCAAGCGAGTCATTCGCTCTCAGAATCGTGTTATTGTGGAAGGAAAAAATCTGGTAAAGAAACATATCAAGCAAGGCCAAGGCCATGAAGGTGGGATATTTACTGTCGAAGCCCCTCTTCATGCCTCAAATGTGCAAGTTGTTGATCCAGTGACAGGGAGGGCTTGTAAAGTTGGTGTAAGATATCTCGAGGATGGAACAAAAGTTCGAGTATCTAGAGGAATAGGGGCATCGGGATCTATAATCCCTCGTCCTGAGATCTTGAAGATAAGAACCACTCCAAGACCTACTGTTGCTGGTCCAAAGGACACTCCTATGAATGTTGCGTTGGAGAAGACTTATGATGCCAAAACAGGGAAGGGCATGGCTGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

160

Amino Acids

17.36

Weight (kDa)

10.31

Isoelectric Point (pI)

19.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23535 AT5G23535
fragaria_vesca	FvH4_2g23200
malus_domestica	MD03G1261300.v1.1 MD11G1281700.v1.1
prunus_persica	Prupe.1G577100_v2.0.a1 Prupe.1G577100_v2.0.a1 Prupe.8G237600_v2.0.a1 Prupe.8G237600_v2.0.a1
pyrus_communis	pycom03g20930 pycom11g24980
rosa_chinensis	RchiOBHm_Chr1g0329981 RchiOBHm_Chr6g0290451
rosa_laevigata	RLG00000012214 RLG00000029859
rosa_multiflora	Rmu_sc0000499.1_g000005 Rmu_sc0002890.1_g000007 Rmu_sc0009365.1_g000007 Rmu_sc0009365.1_g000020
rosa_roxburghii	Rroxscaffold_7G00177050
rosa_rugosa	Rorug01G0083600 Rorug01G0083700 Rorug01G0083800 Rorug01G0083900 Rorug01G0085000 Rorug01G0085100 Rorug06G0212800
rosa_samantha	Rh1BG081000 Rh6CG336500 Rh6DG323400
rosa_wichuraiana	Rw0G022380 Rw1G008290 Rw6G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	2 cut(s)	242, 346
AfiI	CCNNNNNNNGG	2 cut(s)	257, 456
AgsI	TTSAA	1 cut(s)	367
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
AlwI	GGATC	2 cut(s)	242, 346
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	2 cut(s)	178, 184
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	443
BccI	CCATC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	318
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	401
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	401
BmsI	GCATC	2 cut(s)	341, 436
BpiI	GAAGAC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	181
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 253, 283
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 456
Bse1I	ACTGG	2 cut(s)	41, 251
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	2 cut(s)	257, 456
BseMII	CTCAG	4 cut(s)	9, 61, 137, 348
BseNI	ACTGG	2 cut(s)	41, 251
BseRI	GAGGAG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	180, 186
BsiHKCI	CYCGRG	1 cut(s)	290
BslI	CCNNNNNNNGG	2 cut(s)	257, 456
BsnI	GGCC	2 cut(s)	180, 186
BsoBI	CYCGRG	1 cut(s)	290
Bsp143I	GATC	3 cut(s)	247, 338, 360
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	2 cut(s)	180, 186
BspCNI	CTCAG	4 cut(s)	10, 60, 136, 349
BspPI	GGATC	2 cut(s)	242, 346
BsrI	ACTGG	2 cut(s)	41, 251
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	3 cut(s)	247, 338, 360
BssT1I	CCWWGG	1 cut(s)	181
Bst4CI	ACNGT	2 cut(s)	208, 394
Bst6I	CTCTTC	1 cut(s)	225
BstDEI	CTNAG	4 cut(s)	18, 47, 123, 357
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	3 cut(s)	250, 341, 363
BstMBI	GATC	3 cut(s)	247, 338, 360
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	2 cut(s)	338, 360
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	2 cut(s)	338, 360
BsuRI	GGCC	2 cut(s)	180, 186
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	2 cut(s)	34, 258
Cfr13I	GGNCC	1 cut(s)	401
CviAII	CATG	3 cut(s)	188, 224, 466
CviJI	RGCY	6 cut(s)	17, 180, 186, 215, 266, 470
CviKI_1	RGCY	6 cut(s)	17, 180, 186, 215, 266, 470
DdeI	CTNAG	4 cut(s)	18, 47, 123, 357
DpnI	GATC	3 cut(s)	249, 340, 362
DpnII	GATC	3 cut(s)	247, 338, 360
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	181
Eco32I	GATATC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	401
Eco88I	CYCGRG	1 cut(s)	290
EcoRV	GATATC	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	3 cut(s)	191, 227, 469
FaiI	YATR	7 cut(s)	168, 189, 225, 344, 419, 444, 467
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FatI	CATG	3 cut(s)	187, 223, 465
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	180, 186
Hin1II	CATG	3 cut(s)	191, 227, 469
HinfI	GANTC	2 cut(s)	111, 127
HphI	GGTGA	1 cut(s)	101
Hpy188I	TCNGA	2 cut(s)	50, 126
Hpy188III	TCNNGA	5 cut(s)	290, 318, 336, 356, 364
HpyAV	CCTTC	4 cut(s)	34, 137, 185, 454
HpyCH4III	ACNGT	2 cut(s)	208, 394
HpyCH4V	TGCA	1 cut(s)	238
HpyF3I	CTNAG	4 cut(s)	18, 47, 123, 357
Hsp92II	CATG	3 cut(s)	191, 227, 469
Kzo9I	GATC	3 cut(s)	247, 338, 360
LpnPI	CCDG	8 cut(s)	22, 81, 140, 243, 264, 369, 384, 441
LweI	GCATC	2 cut(s)	341, 436
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	3 cut(s)	249, 340, 362
MboI	GATC	3 cut(s)	247, 338, 360
MboII	GAAGA	3 cut(s)	212, 379, 448
MflI	RGATCY	2 cut(s)	338, 360
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	7 cut(s)	44, 228, 238, 255, 286, 314, 360
MslI	CAYNNNNRTG	2 cut(s)	192, 416
NdeII	GATC	3 cut(s)	247, 338, 360
NlaIII	CATG	3 cut(s)	191, 227, 469
NmuCI	GTSAC	1 cut(s)	253
PaeR7I	CTCGAG	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PspPI	GGNCC	1 cut(s)	401
PsuI	RGATCY	2 cut(s)	338, 360
RseI	CAYNNNNRTG	2 cut(s)	192, 416
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	3 cut(s)	247, 338, 360
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	1 cut(s)	120
SetI	ASST	4 cut(s)	45, 100, 196, 391
SfaNI	GCATC	2 cut(s)	341, 436
Sfr274I	CTCGAG	1 cut(s)	290
SinI	GGWCC	1 cut(s)	401
SlaI	CTCGAG	1 cut(s)	290
SmiMI	CAYNNNNRTG	2 cut(s)	192, 416
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	2 cut(s)	208, 394
TaqI	TCGA	3 cut(s)	210, 291, 310
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	127
TscAI	CASTG	2 cut(s)	41, 258
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	3 cut(s)	204, 212, 434
TspRI	CASTG	2 cut(s)	41, 258
VpaK11BI	GGWCC	1 cut(s)	401
XbaI	TCTAGA	1 cut(s)	317
XhoI	CTCGAG	1 cut(s)	290
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.