Rorug06G0212800

Belongs to the universal ribosomal protein uL24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004210
Physical Location & Seq
Forward (+)
33870391 .. 33872683
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0212800.1

Sequence Viewer

Length: 1437 bp
ATGGCGCTGTTTATCTTAATCATCGTGGCACTGCTGCTATCTGTTTTTGTGTTTTCGGCTTTCTTTGTGCTGCAATCTTGGACTTCATCACCGAAAAGCATGGTCGGAATCCCGGGCAGCTTGGGCTGGCCTATTGTTGGTGAGAGCTTCTCATTTATATCAGAGTTTTCAAGTCCATCTGGTATATACAGCTTCATGAACAAGAGGCAGCAGAGGTATGGAAAAGTGTTCAAGACTTTTGTATTGGGTAGATTCAGTGTGTTCATGACCGGAAGAGAAGCAAGCAAGATGCTGTTAGCAGGAAAAGACGGAATGGTTAGCTTAAACCTGTTCTACACAGGACAGCAGGTGCTAGGTCCAACCAGCTTGCTACAAACCACCGGAGAAGAGCACAAGCGGCTTAGACGGCTGATTGCTGAGCCCCTATCAGTTGATGGCCTGAAAAAATATTTTCAGTTCATCAATAAGCTGGCAATTGAAACATTAGAAGATTGGCCTGGCCGAACTGTTTTGGTCCTTGAAGAAGCTTCTACATTCACTCTCCAAGTTATTGGTAACATGATCATGAGCTTGGAGCCTGCTGGTGAAGAACAGGAGAAATTCCGAGCCAATTTTAAACTCATCTCTTCCTCCTTTGCATCCTTGCCATTCAAAATCCCTGGAACAGCTTTTCATTCTGGTATTCAGGCACGGGATAGGATGTATGCAATGTTAGACTCAGTAATTTCTAAAAGGAGAAATGGAGAAGGATTCCAACAAGATTTCTTGGAATCACTGATAATGAAACATAGCAAAGTAGCAGGCAGCGAAGATGATAAGGATAAACTCACTGACAAACAATTGAAAGACAATGTATTAACTCTGCTGGTTGCAGGTCACGATACCACGACTGCTGCTCTTACATGGCTCATTAAATTCCTTGGAGAGAATCCTGCTGTTCTGGAACAACTAAGAGATGAGCATCAACAAATTCAAGCAAACCGAGGTAATGGAGCTGATCTAACATGGTCTGAAGTTAACAATATGGCTTACACCGCCAAGGTAATCAATGAAACTCTTCGGAGAGCCACTATTTTACCTTGGTTTTCAAGAAAGGCTGCCCAGAATTTTGAGATTGATGGATATAATATAGAGAAAGGTTGGTCTGTTAACTTGGATGTTGTCTCTATTCATCATGATCCAGAAGTCTTTCCTGATCCTCAAAAGTTTGATCCCTCCAGGTTTGATGAACCCCTAAAGCCTTTTAGCTTTCTTGGATTTGGTAGCGGACAACGTATGTGCCCTGGAATCAATCTGGCCAAACTTGAAATCTCAGTTTTCATCCATCACCTGGTCTGCAAATACAAGTGGAAGCCTCTGGAGAAAGATGACTCAGTCCAGCCAACACTAGTAAGAATGCCAAAAAACAAGTATCCGATTGTAGCCGAGCCACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KOW ribosomal_L24

Protein Analysis

478

Amino Acids

53.87

Weight (kDa)

8.57

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 38 - 464 1.4e-71 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 337
Acc36I ACCTGC 2 cut(s) 337, 863
AccB7I CCANNNNNTGG 1 cut(s) 1330
AciI CCGC 3 cut(s) 397, 1035, 1266
AclWI GGATC 3 cut(s) 1172, 1190, 1205
AcoI YGGCCR 2 cut(s) 499, 1296
AcsI RAATTY 4 cut(s) 599, 914, 969, 1105
AcuI CTGAAG 1 cut(s) 1032
AfiI CCNNNNNNNGG 2 cut(s) 137, 1330
AgsI TTSAA 9 cut(s) 171, 232, 479, 521, 652, 844, 974, 1089, 1307
AhlI ACTAGT 1 cut(s) 1387
AjnI CCWGG 5 cut(s) 496, 658, 1217, 1282, 1329
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 1 cut(s) 1168
AlwI GGATC 3 cut(s) 1172, 1190, 1205
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 5 cut(s) 128, 436, 494, 499, 1296
ApeKI GCWGC 7 cut(s) 34, 70, 117, 208, 804, 893, 1097
ApoI RAATTY 4 cut(s) 599, 914, 969, 1105
Asp700I GAANNNNTTC 2 cut(s) 1056, 1188
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 356, 514
AsuC2I CCSGG 2 cut(s) 113, 114
AsuHPI GGTGA 4 cut(s) 81, 152, 596, 1319
AvaI CYCGRG 1 cut(s) 112
AvaII GGWCC 2 cut(s) 356, 514
BaeGI GKGCMC 1 cut(s) 1283
BalI TGGCCA 1 cut(s) 1298
BanII GRGCYC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 7 cut(s) 21, 57, 129, 220, 816, 880, 1084
BccI CCATC 4 cut(s) 184, 428, 1112, 1332
BceAI ACGGC 1 cut(s) 422
BciT130I CCWGG 5 cut(s) 498, 660, 1219, 1284, 1331
BciVI GTATCC 1 cut(s) 1422
BclI TGATCA 1 cut(s) 561
BcnI CCSGG 2 cut(s) 113, 114
BcoDI GTCTC 1 cut(s) 1168
BcuI ACTAGT 1 cut(s) 1387
BfaI CTAG 2 cut(s) 353, 1388
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 2 cut(s) 337, 863
BfuI GTATCC 1 cut(s) 1422
BisI GCNGC 8 cut(s) 35, 71, 118, 209, 398, 805, 894, 1098
BlpI GCTNAGC 1 cut(s) 417
BlsI GCNGC 8 cut(s) 36, 72, 119, 210, 399, 806, 895, 1099
Bme1390I CCNGG 7 cut(s) 113, 114, 498, 660, 1219, 1284, 1331
Bme18I GGWCC 2 cut(s) 356, 514
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 2 cut(s) 356, 514
BmiI GGNNCC 1 cut(s) 576
BmrFI CCNGG 7 cut(s) 113, 114, 498, 660, 1219, 1284, 1331
BmsI GCATC 3 cut(s) 279, 647, 970
BplI GAGNNNNNCTC 2 cut(s) 134, 166
BpmI CTGGAG 2 cut(s) 1201, 1379
Bpu1102I GCTNAGC 1 cut(s) 417
BpuMI CCSGG 2 cut(s) 113, 114
BsaBI GATNNNNATC 1 cut(s) 960
BsaJI CCNNGG 7 cut(s) 112, 658, 919, 982, 1038, 1079, 1282
BsaWI WCCGGW 2 cut(s) 269, 380
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 1330
Bse3DI GCAATG 1 cut(s) 714
Bse8I GATNNNNATC 1 cut(s) 960
BseBI CCWGG 5 cut(s) 498, 660, 1219, 1284, 1331
BseDI CCNNGG 7 cut(s) 112, 658, 919, 982, 1038, 1079, 1282
BseGI GGATG 4 cut(s) 638, 705, 1162, 1320
BseJI GATNNNNATC 1 cut(s) 960
BseLI CCNNNNNNNGG 2 cut(s) 137, 1330
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 4 cut(s) 408, 732, 1326, 1386
BseSI GKGCMC 1 cut(s) 1283
BseXI GCAGC 7 cut(s) 21, 57, 129, 220, 816, 880, 1084
BshFI GGCC 5 cut(s) 130, 438, 496, 501, 1298
BsiHKAI GWGCWC 1 cut(s) 393
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 3 cut(s) 113, 270, 381
BslI CCNNNNNNNGG 2 cut(s) 137, 1330
BsmAI GTCTC 1 cut(s) 1168
BsmI GAATGC 1 cut(s) 1401
BsnI GGCC 5 cut(s) 130, 438, 496, 501, 1298
BsoBI CYCGRG 1 cut(s) 112
Bsp1286I GDGCHC 3 cut(s) 393, 423, 1283
Bsp143I GATC 5 cut(s) 561, 997, 1177, 1195, 1210
Bsp1720I GCTNAGC 1 cut(s) 417
BspACI CCGC 3 cut(s) 397, 1035, 1266
BspANI GGCC 5 cut(s) 130, 438, 496, 501, 1298
BspCNI CTCAG 4 cut(s) 409, 731, 1325, 1385
BspHI TCATGA 4 cut(s) 195, 264, 564, 1174
BspLI GGNNCC 1 cut(s) 576
BspMI ACCTGC 2 cut(s) 337, 863
BspPI GGATC 3 cut(s) 1172, 1190, 1205
BspQI GCTCTTC 1 cut(s) 381
BsrDI GCAATG 1 cut(s) 714
BssECI CCNNGG 7 cut(s) 112, 658, 919, 982, 1038, 1079, 1282
BssMI GATC 5 cut(s) 561, 997, 1177, 1195, 1210
BssT1I CCWWGG 3 cut(s) 919, 1038, 1079
Bst2UI CCWGG 5 cut(s) 498, 660, 1219, 1284, 1331
Bst4CI ACNGT 1 cut(s) 508
Bst6I CTCTTC 4 cut(s) 268, 381, 631, 1062
BstC8I GCNNGC 6 cut(s) 128, 283, 368, 471, 579, 802
BstDEI CTNAG 6 cut(s) 401, 417, 718, 950, 1312, 1372
BstF5I GGATG 4 cut(s) 638, 705, 1162, 1320
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 5 cut(s) 564, 1000, 1180, 1198, 1213
BstMAI GTCTC 1 cut(s) 1168
BstMBI GATC 5 cut(s) 561, 997, 1177, 1195, 1210
BstMWI GCNNNNNNNGC 4 cut(s) 123, 397, 406, 1034
BstNI CCWGG 5 cut(s) 498, 660, 1219, 1284, 1331
BstSCI CCNGG 7 cut(s) 111, 112, 496, 658, 1217, 1282, 1329
BstSLI GKGCMC 1 cut(s) 1283
BstV1I GCAGC 7 cut(s) 21, 57, 129, 220, 816, 880, 1084
BstXI CCANNNNNNTGG 1 cut(s) 551
BsuI GTATCC 1 cut(s) 1422
BsuRI GGCC 5 cut(s) 130, 438, 496, 501, 1298
BtsCI GGATG 4 cut(s) 638, 705, 1162, 1320
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 4 cut(s) 29, 262, 773, 828
BveI ACCTGC 2 cut(s) 337, 863
Cac8I GCNNGC 6 cut(s) 128, 283, 368, 471, 579, 802
CciI TCATGA 4 cut(s) 195, 264, 564, 1174
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 356, 514
Cfr9I CCCGGG 1 cut(s) 112
CsiI ACCWGGT 1 cut(s) 1329
CviAII CATG 8 cut(s) 100, 196, 265, 559, 565, 903, 1005, 1175
DdeI CTNAG 6 cut(s) 401, 417, 718, 950, 1312, 1372
DpnI GATC 5 cut(s) 563, 999, 1179, 1197, 1212
DpnII GATC 5 cut(s) 561, 997, 1177, 1195, 1210
DraI TTTAAA 1 cut(s) 616
EaeI YGGCCR 2 cut(s) 499, 1296
Eam1104I CTCTTC 4 cut(s) 268, 381, 631, 1062
EarI CTCTTC 4 cut(s) 268, 381, 631, 1062
Eco130I CCWWGG 3 cut(s) 919, 1038, 1079
Eco24I GRGCYC 1 cut(s) 423
Eco47I GGWCC 2 cut(s) 356, 514
Eco57I CTGAAG 1 cut(s) 1032
Eco88I CYCGRG 1 cut(s) 112
EcoRII CCWGG 5 cut(s) 496, 658, 1217, 1282, 1329
EcoT14I CCWWGG 3 cut(s) 919, 1038, 1079
EcoT38I GRGCYC 1 cut(s) 423
ErhI CCWWGG 3 cut(s) 919, 1038, 1079
FaeI CATG 8 cut(s) 103, 199, 268, 562, 568, 906, 1008, 1178
FatI CATG 8 cut(s) 99, 195, 264, 558, 564, 902, 1004, 1174
FbaI TGATCA 1 cut(s) 561
Fnu4HI GCNGC 8 cut(s) 35, 71, 118, 209, 398, 805, 894, 1098
FokI GGATG 4 cut(s) 625, 712, 1169, 1307
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 8 cut(s) 35, 71, 118, 209, 398, 805, 894, 1098
FspBI CTAG 2 cut(s) 353, 1388
GlaI GCGC 1 cut(s) 6
GluI GCNGC 8 cut(s) 35, 71, 118, 209, 398, 805, 894, 1098
GsuI CTGGAG 2 cut(s) 1201, 1379
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 5 cut(s) 130, 438, 496, 501, 1298
HapII CCGG 3 cut(s) 113, 270, 381
HhaI GCGC 1 cut(s) 7
Hin1II CATG 8 cut(s) 103, 199, 268, 562, 568, 906, 1008, 1178
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 2 cut(s) 1018, 1150
HindII GTYRAC 2 cut(s) 1018, 1150
HindIII AAGCTT 1 cut(s) 525
HinfI GANTC 8 cut(s) 108, 252, 716, 750, 770, 928, 1287, 1370
HpaI GTTAAC 2 cut(s) 1018, 1150
HpaII CCGG 3 cut(s) 113, 270, 381
HphI GGTGA 4 cut(s) 81, 152, 596, 1319
Hpy166II GTNNAC 2 cut(s) 1018, 1150
Hpy188I TCNGA 6 cut(s) 107, 163, 605, 1012, 1062, 1416
Hpy8I GTNNAC 2 cut(s) 1018, 1150
HpyAV CCTTC 1 cut(s) 740
HpyCH4III ACNGT 1 cut(s) 508
HpyCH4IV ACGT 1 cut(s) 1273
HpyCH4V TGCA 5 cut(s) 73, 638, 707, 872, 1338
HpyF10VI GCNNNNNNNGC 4 cut(s) 123, 397, 406, 1034
HpyF3I CTNAG 6 cut(s) 401, 417, 718, 950, 1312, 1372
HpySE526I ACGT 1 cut(s) 1273
Hsp92II CATG 8 cut(s) 103, 199, 268, 562, 568, 906, 1008, 1178
HspAI GCGC 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 561
KspAI GTTAAC 2 cut(s) 1018, 1150
Kzo9I GATC 5 cut(s) 561, 997, 1177, 1195, 1210
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 2 cut(s) 574, 992
Lsp1109I GCAGC 7 cut(s) 21, 57, 129, 220, 816, 880, 1084
LweI GCATC 3 cut(s) 279, 647, 970
MabI ACCWGGT 1 cut(s) 1329
MaeI CTAG 2 cut(s) 353, 1388
MaeII ACGT 1 cut(s) 1273
MaeIII GTNAC 2 cut(s) 554, 875
MalI GATC 5 cut(s) 563, 999, 1179, 1197, 1212
MboI GATC 5 cut(s) 561, 997, 1177, 1195, 1210
MboII GAAGA 8 cut(s) 285, 398, 500, 533, 599, 618, 821, 1049
MfeI CAATTG 2 cut(s) 474, 839
MhlI GDGCHC 3 cut(s) 393, 423, 1283
MlsI TGGCCA 1 cut(s) 1298
MluCI AATT 8 cut(s) 474, 599, 610, 723, 839, 914, 969, 1105
MluNI TGGCCA 1 cut(s) 1298
MlyI GAGTC 2 cut(s) 710, 1364
MmeI TCCRAC 3 cut(s) 85, 383, 778
MnlI CCTC 7 cut(s) 198, 207, 640, 977, 1209, 1225, 1365
Mox20I TGGCCA 1 cut(s) 1298
MroXI GAANNNNTTC 2 cut(s) 1056, 1188
MscI TGGCCA 1 cut(s) 1298
MseI TTAA 8 cut(s) 17, 323, 615, 857, 912, 1017, 1149, 1435
MslI CAYNNNNRTG 1 cut(s) 563
Msp20I TGGCCA 1 cut(s) 1298
MspI CCGG 3 cut(s) 113, 270, 381
MspR9I CCNGG 7 cut(s) 113, 114, 498, 660, 1219, 1284, 1331
MunI CAATTG 2 cut(s) 474, 839
Mva1269I GAATGC 1 cut(s) 1401
MvaI CCWGG 5 cut(s) 498, 660, 1219, 1284, 1331
MwoI GCNNNNNNNGC 4 cut(s) 123, 397, 406, 1034
NciI CCSGG 2 cut(s) 113, 114
NdeII GATC 5 cut(s) 561, 997, 1177, 1195, 1210
NlaIII CATG 8 cut(s) 103, 199, 268, 562, 568, 906, 1008, 1178
NlaIV GGNNCC 1 cut(s) 576
NmuCI GTSAC 1 cut(s) 875
PagI TCATGA 4 cut(s) 195, 264, 564, 1174
PaqCI CACCTGC 1 cut(s) 337
PciSI GCTCTTC 1 cut(s) 381
PctI GAATGC 1 cut(s) 1401
PdmI GAANNNNTTC 2 cut(s) 1056, 1188
PfeI GAWTC 6 cut(s) 108, 252, 750, 770, 928, 1287
PflFI GACNNNGTC 1 cut(s) 1373
PflMI CCANNNNNTGG 1 cut(s) 1330
PkrI GCNGC 8 cut(s) 36, 72, 119, 210, 399, 806, 895, 1099
PleI GAGTC 2 cut(s) 710, 1364
PpsI GAGTC 2 cut(s) 710, 1364
Psp6I CCWGG 5 cut(s) 496, 658, 1217, 1282, 1329
PspGI CCWGG 5 cut(s) 496, 658, 1217, 1282, 1329
PspN4I GGNNCC 1 cut(s) 576
PspPI GGNCC 2 cut(s) 356, 514
PsyI GACNNNGTC 1 cut(s) 1373
RseI CAYNNNNRTG 1 cut(s) 563
SapI GCTCTTC 1 cut(s) 381
SaqAI TTAA 8 cut(s) 17, 323, 615, 857, 912, 1017, 1149, 1435
SatI GCNGC 8 cut(s) 35, 71, 118, 209, 398, 805, 894, 1098
Sau3AI GATC 5 cut(s) 561, 997, 1177, 1195, 1210
Sau96I GGNCC 2 cut(s) 356, 514
SchI GAGTC 2 cut(s) 710, 1364
ScrFI CCNGG 7 cut(s) 113, 114, 498, 660, 1219, 1284, 1331
SduI GDGCHC 3 cut(s) 393, 423, 1283
SexAI ACCWGGT 1 cut(s) 1329
SfaNI GCATC 3 cut(s) 279, 647, 970
SinI GGWCC 2 cut(s) 356, 514
SmaI CCCGGG 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 563
SpeI ACTAGT 1 cut(s) 1387
Sse9I AATT 8 cut(s) 474, 599, 610, 723, 839, 914, 969, 1105
SsiI CCGC 3 cut(s) 397, 1035, 1266
SspI AATATT 1 cut(s) 449
SspMI CTAG 2 cut(s) 353, 1388
StyD4I CCNGG 7 cut(s) 111, 112, 496, 658, 1217, 1282, 1329
StyI CCWWGG 3 cut(s) 919, 1038, 1079
TaaI ACNGT 1 cut(s) 508
TaiI ACGT 1 cut(s) 1276
TasI AATT 8 cut(s) 474, 599, 610, 723, 839, 914, 969, 1105
TauI GCSGC 1 cut(s) 400
TfiI GAWTC 6 cut(s) 108, 252, 750, 770, 928, 1287
Tru1I TTAA 8 cut(s) 17, 323, 615, 857, 912, 1017, 1149, 1435
Tru9I TTAA 8 cut(s) 17, 323, 615, 857, 912, 1017, 1149, 1435
TscAI CASTG 4 cut(s) 36, 262, 780, 835
TseFI GTSAC 1 cut(s) 875
TseI GCWGC 7 cut(s) 34, 70, 117, 208, 804, 893, 1097
Tsp45I GTSAC 1 cut(s) 875
TspGWI ACGGA 1 cut(s) 324
TspMI CCCGGG 1 cut(s) 112
TspRI CASTG 4 cut(s) 36, 262, 780, 835
Tth111I GACNNNGTC 1 cut(s) 1373
Van91I CCANNNNNTGG 1 cut(s) 1330
VpaK11BI GGWCC 2 cut(s) 356, 514
XapI RAATTY 4 cut(s) 599, 914, 969, 1105
XmaI CCCGGG 1 cut(s) 112
XmnI GAANNNNTTC 2 cut(s) 1056, 1188
XspI CTAG 2 cut(s) 353, 1388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.