Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009365.1

Orthogroup ID

OG0004210

Physical Location & Seq

Genomic Coordinates Forward (+)

91482 .. 92784

Gene Structure 1303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009365.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgggttggaaagcagctgagaaacttatcaggcactggaaggttcttagaggagacaatgtgatgatcataagaggcaaagacaagggtgagacaggtgtcattaagcgagttattcgctctcagaatcgtgtaattgtggagggcaaaaatttggtaaagaaacatatcaagcaaggccaaggtcatgaaggtgggatatttactgttgaagcccctcttcatgcttcaaatgtgcaacagatccagaggccttgcaaggttggggttaaatatcttgaggatggaacaaaagttagagtagcaagaggcacaggagcatcgggatctataatccctcgtcctgagatcttgaagataagagctaccccaagacctaccgttgctggtccaaaggatactcctatgaatcttgtgttagagcagacgtatgatgccaaaacagggaaaggcatgcctgaactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

155

Amino Acids

17.07

Weight (kDa)

10.32

Isoelectric Point (pI)

23.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23535 AT5G23535
fragaria_vesca	FvH4_2g23200
malus_domestica	MD03G1261300.v1.1 MD11G1281700.v1.1
prunus_persica	Prupe.1G577100_v2.0.a1 Prupe.1G577100_v2.0.a1 Prupe.8G237600_v2.0.a1 Prupe.8G237600_v2.0.a1
pyrus_communis	pycom03g20930 pycom11g24980
rosa_chinensis	RchiOBHm_Chr1g0329981 RchiOBHm_Chr6g0290451
rosa_laevigata	RLG00000012214 RLG00000029859
rosa_multiflora	Rmu_sc0000499.1_g000005 Rmu_sc0002890.1_g000007 Rmu_sc0009365.1_g000007 Rmu_sc0009365.1_g000020
rosa_roxburghii	Rroxscaffold_7G00177050
rosa_rugosa	Rorug01G0083600 Rorug01G0083700 Rorug01G0083800 Rorug01G0083900 Rorug01G0085000 Rorug01G0085100 Rorug06G0212800
rosa_samantha	Rh1BG081000 Rh6CG336500 Rh6DG323400
rosa_wichuraiana	Rw0G022380 Rw1G008290 Rw6G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	238, 334
AcsI	RAATTY	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	444
AgsI	TTSAA	3 cut(s)	212, 231, 355
AluBI	AGCT	2 cut(s)	17, 365
AluI	AGCT	2 cut(s)	17, 365
Alw26I	GTCTC	2 cut(s)	48, 86
AlwI	GGATC	2 cut(s)	238, 334
AlwNI	CAGNNNCTG	1 cut(s)	36
AoxI	GGCC	2 cut(s)	178, 251
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	389
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	391
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	2 cut(s)	48, 86
BfuI	GTATCC	1 cut(s)	391
BglII	AGATCT	1 cut(s)	348
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	389
BmsI	GCATC	2 cut(s)	329, 424
BoxI	GACNNNNGTC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse1I	ACTGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMII	CTCAG	3 cut(s)	9, 137, 336
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	26
BshFI	GGCC	2 cut(s)	180, 253
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmAI	GTCTC	2 cut(s)	48, 86
BsnI	GGCC	2 cut(s)	180, 253
Bsp143I	GATC	4 cut(s)	66, 243, 326, 348
BspANI	GGCC	2 cut(s)	180, 253
BspCNI	CTCAG	3 cut(s)	10, 136, 337
BspHI	TCATGA	1 cut(s)	187
BspPI	GGATC	2 cut(s)	238, 334
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	4 cut(s)	66, 243, 326, 348
BssT1I	CCWWGG	1 cut(s)	181
Bst4CI	ACNGT	2 cut(s)	208, 382
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	455
BstDEI	CTNAG	4 cut(s)	18, 47, 123, 345
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	4 cut(s)	69, 246, 329, 351
BstMAI	GTCTC	2 cut(s)	48, 86
BstMBI	GATC	4 cut(s)	66, 243, 326, 348
BstNSI	RCATGY	1 cut(s)	457
BstPAI	GACNNNNGTC	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	26
BstX2I	RGATCY	3 cut(s)	243, 326, 348
BstYI	RGATCY	3 cut(s)	243, 326, 348
BsuI	GTATCC	1 cut(s)	391
BsuRI	GGCC	2 cut(s)	180, 253
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	455
CaiI	CAGNNNCTG	1 cut(s)	36
CciI	TCATGA	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	389
CviAII	CATG	3 cut(s)	188, 224, 454
CviJI	RGCY	5 cut(s)	17, 180, 215, 253, 365
CviKI_1	RGCY	5 cut(s)	17, 180, 215, 253, 365
DdeI	CTNAG	4 cut(s)	18, 47, 123, 345
DpnI	GATC	4 cut(s)	68, 245, 328, 350
DpnII	GATC	4 cut(s)	66, 243, 326, 348
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	181
Eco147I	AGGCCT	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	3 cut(s)	191, 227, 457
FaiI	YATR	8 cut(s)	71, 168, 189, 225, 332, 407, 432, 455
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FatI	CATG	3 cut(s)	187, 223, 453
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	180, 253
Hin1II	CATG	3 cut(s)	191, 227, 457
HinfI	GANTC	2 cut(s)	127, 409
HphI	GGTGA	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	6 cut(s)	188, 247, 278, 324, 344, 352
HpyAV	CCTTC	2 cut(s)	34, 185
HpyCH4III	ACNGT	2 cut(s)	208, 382
HpyCH4IV	ACGT	1 cut(s)	428
HpyCH4V	TGCA	2 cut(s)	238, 258
HpyF3I	CTNAG	4 cut(s)	18, 47, 123, 345
HpySE526I	ACGT	1 cut(s)	428
Hsp92II	CATG	3 cut(s)	191, 227, 457
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	4 cut(s)	66, 243, 326, 348
LmnI	GCTCC	1 cut(s)	317
LpnPI	CCDG	8 cut(s)	16, 22, 81, 260, 300, 357, 372, 429
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	2 cut(s)	329, 424
MaeII	ACGT	1 cut(s)	428
MalI	GATC	4 cut(s)	68, 245, 328, 350
MboI	GATC	4 cut(s)	66, 243, 326, 348
MboII	GAAGA	2 cut(s)	212, 367
MflI	RGATCY	3 cut(s)	243, 326, 348
MluCI	AATT	2 cut(s)	135, 151
MnlI	CCTC	8 cut(s)	44, 68, 136, 228, 243, 274, 302, 348
MseI	TTAA	2 cut(s)	105, 270
MslI	CAYNNNNRTG	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	17
NdeII	GATC	4 cut(s)	66, 243, 326, 348
NlaIII	CATG	3 cut(s)	191, 227, 457
NspI	RCATGY	1 cut(s)	457
PaeI	GCATGC	1 cut(s)	457
PagI	TCATGA	1 cut(s)	187
PceI	AGGCCT	1 cut(s)	253
PfeI	GAWTC	2 cut(s)	127, 409
PkrI	GCNGC	1 cut(s)	16
PshAI	GACNNNNGTC	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	389
PstNI	CAGNNNCTG	1 cut(s)	36
PsuI	RGATCY	3 cut(s)	243, 326, 348
PvuII	CAGCTG	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	105, 270
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	4 cut(s)	66, 243, 326, 348
Sau96I	GGNCC	1 cut(s)	389
SetI	ASST	9 cut(s)	19, 45, 100, 187, 196, 264, 367, 379, 431
SfaNI	GCATC	2 cut(s)	329, 424
SinI	GGWCC	1 cut(s)	389
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SphI	GCATGC	1 cut(s)	457
Sse9I	AATT	2 cut(s)	135, 151
SseBI	AGGCCT	1 cut(s)	253
StuI	AGGCCT	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	2 cut(s)	208, 382
TaiI	ACGT	1 cut(s)	431
TasI	AATT	2 cut(s)	135, 151
TfiI	GAWTC	2 cut(s)	127, 409
Tru1I	TTAA	2 cut(s)	105, 270
Tru9I	TTAA	2 cut(s)	105, 270
TscAI	CASTG	1 cut(s)	41
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	3 cut(s)	204, 212, 422
TspRI	CASTG	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.