Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004210

Physical Location & Seq

Genomic Coordinates Reverse (-)

13837559 .. 13838899

Gene Structure 1341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0085100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTTTCAAGACTTTATAATACGTGGGTTTTGGTTTAGTGACCAAAACTTTTCGGCTGATTGGAGGGAATTTTTCTCTTTGATTTATGTAGGCGAATCCTTTTGCTTCATGGTACTCATCGCTGAGCTGCTGTGTGGGTTGAAGAAGGGGGGTGTTGTGGAGCTAACCCTGGTCACGGGGATAGGCTTCGAGATTGATCAGATCGAACCGCCAGAGAATTATCCTATGTTTCTTATTTTCACAACGGGATCTGGAATCAGGTCTCTGATTGCGTCAGGGTTTAATGCTGGTAAGGGATCCGACGTGAAACTCTTCTATGGGGCCAGAAATCTTGACAGAATGGCTTATCAGTGGAGGGCTGCAGAGCGAATCAAGAAGAGTAGTACATGGTGGAGAGATGGGTTCAGCCTTGGCAACAGCGGGATCAATGTATATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

146

Amino Acids

16.61

Weight (kDa)

5.18

Isoelectric Point (pI)

16.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23535 AT5G23535
fragaria_vesca	FvH4_2g23200
malus_domestica	MD03G1261300.v1.1 MD11G1281700.v1.1
prunus_persica	Prupe.1G577100_v2.0.a1 Prupe.1G577100_v2.0.a1 Prupe.8G237600_v2.0.a1 Prupe.8G237600_v2.0.a1
pyrus_communis	pycom03g20930 pycom11g24980
rosa_chinensis	RchiOBHm_Chr1g0329981 RchiOBHm_Chr6g0290451
rosa_laevigata	RLG00000012214 RLG00000029859
rosa_multiflora	Rmu_sc0000499.1_g000005 Rmu_sc0002890.1_g000007 Rmu_sc0009365.1_g000007 Rmu_sc0009365.1_g000020
rosa_roxburghii	Rroxscaffold_7G00177050
rosa_rugosa	Rorug01G0083600 Rorug01G0083700 Rorug01G0083800 Rorug01G0083900 Rorug01G0085000 Rorug01G0085100 Rorug06G0212800
rosa_samantha	Rh1BG081000 Rh6CG336500 Rh6DG323400
rosa_wichuraiana	Rw0G022380 Rw1G008290 Rw6G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
AciI	CCGC	2 cut(s)	209, 420
AclWI	GGATC	4 cut(s)	256, 291, 304, 431
AcsI	RAATTY	1 cut(s)	68
AfaI	GTAC	2 cut(s)	114, 385
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	2 cut(s)	8, 142
AjiI	CACGTC	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	2 cut(s)	127, 163
AluI	AGCT	2 cut(s)	127, 163
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	4 cut(s)	256, 291, 304, 431
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	2 cut(s)	127, 359
ApoI	RAATTY	1 cut(s)	68
Asp700I	GAANNNNTTC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	321
BamHI	GGATCC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	114, 346
BccI	CCATC	1 cut(s)	392
BciT130I	CCWGG	1 cut(s)	170
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	360
BisI	GCNGC	2 cut(s)	128, 360
BlpI	GCTNAGC	1 cut(s)	123
BlsI	GCNGC	2 cut(s)	129, 361
Bme1390I	CCNGG	1 cut(s)	170
BmgBI	CACGTC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	321
BmiI	GGNNCC	2 cut(s)	298, 322
BmrFI	CCNGG	1 cut(s)	170
Bpu1102I	GCTNAGC	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	168, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	168, 409
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	114
BseXI	GCAGC	2 cut(s)	114, 346
BshFI	GGCC	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	323
Bso31I	GGTCTC	1 cut(s)	267
Bsp143I	GATC	5 cut(s)	196, 201, 248, 296, 423
Bsp1720I	GCTNAGC	1 cut(s)	123
BspACI	CCGC	2 cut(s)	209, 420
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	298, 322
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	4 cut(s)	256, 291, 304, 431
BspTNI	GGTCTC	1 cut(s)	267
BssECI	CCNNGG	2 cut(s)	168, 409
BssMI	GATC	5 cut(s)	196, 201, 248, 296, 423
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	170
Bst6I	CTCTTC	2 cut(s)	317, 371
BstBAI	YACGTR	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	123
BstKTI	GATC	5 cut(s)	199, 204, 251, 299, 426
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	5 cut(s)	196, 201, 248, 296, 423
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	2 cut(s)	114, 346
BstX2I	RGATCY	2 cut(s)	248, 296
BstYI	RGATCY	2 cut(s)	248, 296
BsuRI	GGCC	1 cut(s)	323
BtgZI	GCGATG	1 cut(s)	103
BtrI	CACGTC	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	321
CseI	GACGC	1 cut(s)	261
Csp6I	GTAC	2 cut(s)	113, 384
CviAII	CATG	2 cut(s)	109, 387
CviJI	RGCY	8 cut(s)	56, 127, 163, 186, 323, 344, 359, 408
CviKI_1	RGCY	8 cut(s)	56, 127, 163, 186, 323, 344, 359, 408
CviQI	GTAC	2 cut(s)	113, 384
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	5 cut(s)	198, 203, 250, 298, 425
DpnII	GATC	5 cut(s)	196, 201, 248, 296, 423
Eam1104I	CTCTTC	2 cut(s)	317, 371
EarI	CTCTTC	2 cut(s)	317, 371
Eco130I	CCWWGG	1 cut(s)	409
Eco31I	GGTCTC	1 cut(s)	267
EcoRII	CCWGG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	2 cut(s)	112, 390
FaiI	YATR	8 cut(s)	17, 87, 110, 227, 318, 388, 433, 435
FatI	CATG	2 cut(s)	108, 386
FauI	CCCGC	1 cut(s)	413
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	128, 360
Fsp4HI	GCNGC	2 cut(s)	128, 360
GluI	GCNGC	2 cut(s)	128, 360
HaeIII	GGCC	1 cut(s)	323
HgaI	GACGC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	112, 390
HinfI	GANTC	3 cut(s)	95, 255, 369
Hpy188I	TCNGA	3 cut(s)	201, 267, 301
Hpy188III	TCNNGA	5 cut(s)	8, 190, 252, 332, 373
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	1 cut(s)	139
HpyCH4IV	ACGT	2 cut(s)	22, 303
HpyCH4V	TGCA	1 cut(s)	362
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	2 cut(s)	22, 303
Hsp92II	CATG	2 cut(s)	112, 390
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	5 cut(s)	196, 201, 248, 296, 423
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	8 cut(s)	155, 182, 225, 237, 244, 261, 273, 337
Lsp1109I	GCAGC	2 cut(s)	114, 346
MaeII	ACGT	2 cut(s)	22, 303
MaeIII	GTNAC	2 cut(s)	38, 172
MalI	GATC	5 cut(s)	198, 203, 250, 298, 425
MboI	GATC	5 cut(s)	196, 201, 248, 296, 423
MboII	GAAGA	3 cut(s)	154, 304, 388
MflI	RGATCY	2 cut(s)	248, 296
MluCI	AATT	2 cut(s)	68, 217
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	2 cut(s)	57, 348
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	420
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
NdeII	GATC	5 cut(s)	196, 201, 248, 296, 423
NlaIII	CATG	2 cut(s)	112, 390
NlaIV	GGNNCC	2 cut(s)	298, 322
NmuCI	GTSAC	2 cut(s)	38, 172
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	3 cut(s)	95, 255, 369
PkrI	GCNGC	2 cut(s)	129, 361
Ppu21I	YACGTR	1 cut(s)	23
PsiI	TTATAA	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	2 cut(s)	298, 322
PspPI	GGNCC	1 cut(s)	321
PstI	CTGCAG	1 cut(s)	364
PsuI	RGATCY	2 cut(s)	248, 296
RsaI	GTAC	2 cut(s)	114, 385
RsaNI	GTAC	2 cut(s)	113, 384
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	2 cut(s)	128, 360
Sau3AI	GATC	5 cut(s)	196, 201, 248, 296, 423
Sau96I	GGNCC	1 cut(s)	321
ScrFI	CCNGG	1 cut(s)	170
SetI	ASST	5 cut(s)	25, 129, 165, 263, 306
SfcI	CTRYAG	1 cut(s)	360
Sse9I	AATT	2 cut(s)	68, 217
SsiI	CCGC	2 cut(s)	209, 420
StyD4I	CCNGG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	409
TaiI	ACGT	2 cut(s)	25, 306
TaqI	TCGA	2 cut(s)	189, 204
TasI	AATT	2 cut(s)	68, 217
TatI	WGTACW	1 cut(s)	383
TfiI	GAWTC	3 cut(s)	95, 255, 369
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	356
TseFI	GTSAC	2 cut(s)	38, 172
TseI	GCWGC	2 cut(s)	127, 359
Tsp45I	GTSAC	2 cut(s)	38, 172
TspDTI	ATGAA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	356
XapI	RAATTY	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.