Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004210

Physical Location & Seq

Genomic Coordinates Reverse (-)

27822129 .. 27823490

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g24980.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGTTGGAAAGCAGCTGAGAAACTCATTAGGCACTGGAAGATTCTCAGAGGAGATAATGTGATGATAACAAGAGGCAAAGACAAGGGCGAGACGGGTGTCATCAAACGAGTCATTCGCTCTCAGAATCGTGTCATCGTGGAAGGCAAAAATCTGGTAAAGAAACATATCAAGCAAGGCCAAGGTCATGAAGGTGGGATTTTCACTGTCGAAGCGCCTCTCCATGCCTCAAATGTGCAAGTTGTTGATCCGGTGACAGGGAGGCCTGTTAAGGTCGGTGTGAGATATCTTGAGGATGGAACGAAAGTTCGAGTATCTAGAGGATTAGGCGCATCGGGATCTATAATCCCTCGTCCTGAGATCTTGAAAATAAGGACTACTCCAAGACCTACTGTTGCTGGCCCCAAGGACACTCTGATGGATGTCGTGTTGGAGAAGACATATGACGCTAAGACGGGGAAGGGAATGCCTGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

160

Amino Acids

17.46

Weight (kDa)

10.31

Isoelectric Point (pI)

25.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23535 AT5G23535
fragaria_vesca	FvH4_2g23200
malus_domestica	MD03G1261300.v1.1 MD11G1281700.v1.1
prunus_persica	Prupe.1G577100_v2.0.a1 Prupe.1G577100_v2.0.a1 Prupe.8G237600_v2.0.a1 Prupe.8G237600_v2.0.a1
pyrus_communis	pycom03g20930 pycom11g24980
rosa_chinensis	RchiOBHm_Chr1g0329981 RchiOBHm_Chr6g0290451
rosa_laevigata	RLG00000012214 RLG00000029859
rosa_multiflora	Rmu_sc0000499.1_g000005 Rmu_sc0002890.1_g000007 Rmu_sc0009365.1_g000007 Rmu_sc0009365.1_g000020
rosa_roxburghii	Rroxscaffold_7G00177050
rosa_rugosa	Rorug01G0083600 Rorug01G0083700 Rorug01G0083800 Rorug01G0083900 Rorug01G0085000 Rorug01G0085100 Rorug06G0212800
rosa_samantha	Rh1BG081000 Rh6CG336500 Rh6DG323400
rosa_wichuraiana	Rw0G022380 Rw1G008290 Rw6G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	242, 346
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	1 cut(s)	367
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	2 cut(s)	242, 346
AoxI	GGCC	3 cut(s)	178, 263, 400
ApeKI	GCWGC	1 cut(s)	14
AspLEI	GCGC	2 cut(s)	217, 332
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	443
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	2 cut(s)	290, 412
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	318
BfoI	RGCGCY	1 cut(s)	218
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	1 cut(s)	403
BmsI	GCATC	1 cut(s)	341
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	443
BpuEI	CTTGAG	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	181, 405
BsaWI	WCCGGW	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	181, 405
BseGI	GGATG	2 cut(s)	301, 427
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMII	CTCAG	4 cut(s)	9, 61, 137, 348
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	26
BshFI	GGCC	3 cut(s)	180, 265, 402
BsiSI	CCGG	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	86
BsmBI	CGTCTC	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	3 cut(s)	180, 265, 402
Bsp143I	GATC	3 cut(s)	247, 338, 360
BspANI	GGCC	3 cut(s)	180, 265, 402
BspCNI	CTCAG	4 cut(s)	10, 60, 136, 349
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	403
BspPI	GGATC	2 cut(s)	242, 346
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	181, 405
BssMI	GATC	3 cut(s)	247, 338, 360
BssT1I	CCWWGG	2 cut(s)	181, 405
Bst4CI	ACNGT	2 cut(s)	208, 394
BstC8I	GCNNGC	1 cut(s)	400
BstDEI	CTNAG	5 cut(s)	18, 47, 123, 357, 450
BstF5I	GGATG	2 cut(s)	301, 427
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	2 cut(s)	217, 332
BstKTI	GATC	3 cut(s)	250, 341, 363
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	3 cut(s)	247, 338, 360
BstPAI	GACNNNNGTC	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	2 cut(s)	338, 360
BstYI	RGATCY	2 cut(s)	338, 360
BsuRI	GGCC	3 cut(s)	180, 265, 402
BtsCI	GGATG	2 cut(s)	301, 427
BtsIMutI	CAGTG	2 cut(s)	34, 204
Cac8I	GCNNGC	1 cut(s)	400
CciI	TCATGA	1 cut(s)	187
CfoI	GCGC	2 cut(s)	217, 332
Cfr13I	GGNCC	1 cut(s)	401
CseI	GACGC	1 cut(s)	455
CviAII	CATG	2 cut(s)	188, 224
CviJI	RGCY	4 cut(s)	17, 180, 265, 402
CviKI_1	RGCY	4 cut(s)	17, 180, 265, 402
DdeI	CTNAG	5 cut(s)	18, 47, 123, 357, 450
DpnI	GATC	3 cut(s)	249, 340, 362
DpnII	GATC	3 cut(s)	247, 338, 360
Eco130I	CCWWGG	2 cut(s)	181, 405
Eco147I	AGGCCT	1 cut(s)	265
Eco32I	GATATC	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	287
EcoT14I	CCWWGG	2 cut(s)	181, 405
ErhI	CCWWGG	2 cut(s)	181, 405
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	2 cut(s)	191, 227
FaiI	YATR	6 cut(s)	168, 189, 225, 344, 442, 444
FatI	CATG	2 cut(s)	187, 223
FauNDI	CATATG	1 cut(s)	442
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	2 cut(s)	308, 434
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	2 cut(s)	216, 331
GluI	GCNGC	1 cut(s)	15
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	3 cut(s)	180, 265, 402
HapII	CCGG	1 cut(s)	251
HgaI	GACGC	1 cut(s)	455
HhaI	GCGC	2 cut(s)	217, 332
Hin1II	CATG	2 cut(s)	191, 227
Hin6I	GCGC	2 cut(s)	215, 330
HinP1I	GCGC	2 cut(s)	215, 330
HinfI	GANTC	3 cut(s)	43, 111, 127
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	3 cut(s)	50, 126, 417
Hpy188III	TCNNGA	6 cut(s)	188, 290, 318, 336, 356, 364
HpyAV	CCTTC	3 cut(s)	137, 185, 454
HpyCH4III	ACNGT	2 cut(s)	208, 394
HpyCH4V	TGCA	1 cut(s)	238
HpyF3I	CTNAG	5 cut(s)	18, 47, 123, 357, 450
Hsp92II	CATG	2 cut(s)	191, 227
HspAI	GCGC	2 cut(s)	215, 330
Kzo9I	GATC	3 cut(s)	247, 338, 360
LpnPI	CCDG	7 cut(s)	22, 140, 243, 264, 279, 369, 384
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	1 cut(s)	341
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	3 cut(s)	249, 340, 362
MboI	GATC	3 cut(s)	247, 338, 360
MboII	GAAGA	2 cut(s)	52, 448
MflI	RGATCY	2 cut(s)	338, 360
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	8 cut(s)	44, 68, 228, 238, 255, 286, 314, 360
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	2 cut(s)	192, 416
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	1 cut(s)	251
Mva1269I	GAATGC	1 cut(s)	471
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	3 cut(s)	247, 338, 360
NlaIII	CATG	2 cut(s)	191, 227
NlaIV	GGNNCC	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	253
PagI	TCATGA	1 cut(s)	187
PceI	AGGCCT	1 cut(s)	265
PctI	GAATGC	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	43, 127
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PshAI	GACNNNNGTC	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	401
PsuI	RGATCY	2 cut(s)	338, 360
PvuII	CAGCTG	1 cut(s)	17
RseI	CAYNNNNRTG	2 cut(s)	192, 416
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	3 cut(s)	247, 338, 360
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	1 cut(s)	120
SetI	ASST	5 cut(s)	19, 187, 196, 276, 391
SfaNI	GCATC	1 cut(s)	341
SmiMI	CAYNNNNRTG	2 cut(s)	192, 416
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SseBI	AGGCCT	1 cut(s)	265
SspMI	CTAG	1 cut(s)	318
StuI	AGGCCT	1 cut(s)	265
StyI	CCWWGG	2 cut(s)	181, 405
TaaI	ACNGT	2 cut(s)	208, 394
TaqI	TCGA	2 cut(s)	210, 310
TfiI	GAWTC	2 cut(s)	43, 127
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	2 cut(s)	41, 211
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	2 cut(s)	41, 211
XbaI	TCTAGA	1 cut(s)	317
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.