Prupe.1G577100_v2.0.a1

Belongs to the universal ribosomal protein uL24 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
46983206 .. 46985741
2536 bp
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UTR
Exon/CDS
Intron
Prupe.1G577100.2

Sequence Viewer

Length: 480 bp
ATGGGTTGGAAAGCGGCTGAGAAACTCATTAGGCACTGGAAGGTTCTCAGAGGAGATAATGTGATGATAATAAGGGGCAAAGACAAGGGCGAGACGGGTATCATCAAGCGAGTGATTCGTTCCCAGAATCGTGTCATTGTGGAAGGCAAAAATCTGGTAAAGAAACATATCAAGCAAGGCCAAGGTCATGAAGGTGGAATTTTTACTGTTGAAGCCCCCCTTCATGCCTCAAATGTGCAAGTTGTTGATCCAGTTACAGGGAAGCCTGTTAAGGTCGGGGTTAAATATCTTGAGGATGGAACAAAAGTTCGAGTATCTAGGGGACTAGGTGCATCTGGATCTATAATCCCTCGTCCTGAGATCTTGAAGATAAGGACTACTTCAAGACCTACTGTTGCGGGTCCCAAGGATACGCCTATGGATGTTGTGTTGGAGAAGACTTACGATGCTAAAACAGGGAAGGGCATGCCTGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

160

Amino Acids

17.39

Weight (kDa)

10.2

Isoelectric Point (pI)

22.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 14, 398
AclWI GGATC 2 cut(s) 242, 346
AcsI RAATTY 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 3 cut(s) 212, 367, 384
AloI GAACNNNNNNTCC 2 cut(s) 291, 323
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 2 cut(s) 242, 346
AoxI GGCC 1 cut(s) 178
ApoI RAATTY 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 401
AvaII GGWCC 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 443
BccI CCATC 1 cut(s) 290
BciVI GTATCC 1 cut(s) 403
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 2 cut(s) 318, 326
BfuI GTATCC 1 cut(s) 403
BglII AGATCT 1 cut(s) 360
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 2 cut(s) 402, 403
BmsI GCATC 2 cut(s) 341, 436
BpiI GAAGAC 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 311
BsaJI CCNNGG 2 cut(s) 181, 405
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 2 cut(s) 41, 251
BseDI CCNNGG 2 cut(s) 181, 405
BseGI GGATG 2 cut(s) 301, 427
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMII CTCAG 3 cut(s) 9, 61, 348
BseNI ACTGG 2 cut(s) 41, 251
BseRI GAGGAG 1 cut(s) 66
BshFI GGCC 1 cut(s) 180
BslFI GGGAC 2 cut(s) 336, 387
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
BsmFI GGGAC 2 cut(s) 336, 387
BsnI GGCC 1 cut(s) 180
Bsp143I GATC 3 cut(s) 247, 338, 360
BspACI CCGC 2 cut(s) 14, 398
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 3 cut(s) 10, 60, 349
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 402, 403
BspPI GGATC 2 cut(s) 242, 346
BsrI ACTGG 2 cut(s) 41, 251
BssECI CCNNGG 2 cut(s) 181, 405
BssMI GATC 3 cut(s) 247, 338, 360
BssT1I CCWWGG 2 cut(s) 181, 405
Bst4CI ACNGT 2 cut(s) 208, 394
BstC8I GCNNGC 1 cut(s) 467
BstDEI CTNAG 3 cut(s) 18, 47, 357
BstF5I GGATG 2 cut(s) 301, 427
BstKTI GATC 3 cut(s) 250, 341, 363
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 3 cut(s) 247, 338, 360
BstNSI RCATGY 1 cut(s) 469
BstV2I GAAGAC 1 cut(s) 443
BstX2I RGATCY 2 cut(s) 338, 360
BstYI RGATCY 2 cut(s) 338, 360
BsuI GTATCC 1 cut(s) 403
BsuRI GGCC 1 cut(s) 180
BtsCI GGATG 2 cut(s) 301, 427
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 467
CciI TCATGA 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 401
CviAII CATG 3 cut(s) 188, 224, 466
CviJI RGCY 4 cut(s) 17, 180, 215, 265
CviKI_1 RGCY 4 cut(s) 17, 180, 215, 265
DdeI CTNAG 3 cut(s) 18, 47, 357
DpnI GATC 3 cut(s) 249, 340, 362
DpnII GATC 3 cut(s) 247, 338, 360
Eco130I CCWWGG 2 cut(s) 181, 405
Eco47I GGWCC 1 cut(s) 401
EcoO109I RGGNCCY 1 cut(s) 401
EcoT14I CCWWGG 2 cut(s) 181, 405
ErhI CCWWGG 2 cut(s) 181, 405
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 3 cut(s) 191, 227, 469
FaiI YATR 6 cut(s) 168, 189, 225, 344, 419, 467
FalI AAGNNNNNCTT 4 cut(s) 204, 236, 364, 396
FaqI GGGAC 2 cut(s) 336, 387
FatI CATG 3 cut(s) 187, 223, 465
FauI CCCGC 1 cut(s) 391
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 2 cut(s) 308, 434
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 2 cut(s) 318, 326
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 1 cut(s) 180
Hin1II CATG 3 cut(s) 191, 227, 469
HinfI GANTC 2 cut(s) 115, 127
Hpy188I TCNGA 1 cut(s) 50
Hpy188III TCNNGA 6 cut(s) 188, 290, 336, 356, 364, 384
HpyAV CCTTC 5 cut(s) 34, 137, 185, 230, 454
HpyCH4III ACNGT 2 cut(s) 208, 394
HpyCH4V TGCA 2 cut(s) 238, 332
HpyF3I CTNAG 3 cut(s) 18, 47, 357
Hsp92II CATG 3 cut(s) 191, 227, 469
KflI GGGWCCC 1 cut(s) 401
Kzo9I GATC 3 cut(s) 247, 338, 360
LpnPI CCDG 9 cut(s) 22, 137, 140, 243, 264, 279, 321, 369, 441
LweI GCATC 2 cut(s) 341, 436
MaeI CTAG 2 cut(s) 318, 326
MaeIII GTNAC 1 cut(s) 253
MalI GATC 3 cut(s) 249, 340, 362
MboI GATC 3 cut(s) 247, 338, 360
MboII GAAGA 2 cut(s) 379, 448
MflI RGATCY 2 cut(s) 338, 360
MluCI AATT 1 cut(s) 198
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 4 cut(s) 44, 238, 286, 360
MseI TTAA 2 cut(s) 270, 282
MslI CAYNNNNRTG 1 cut(s) 192
NdeII GATC 3 cut(s) 247, 338, 360
NlaIII CATG 3 cut(s) 191, 227, 469
NlaIV GGNNCC 2 cut(s) 402, 403
NspI RCATGY 1 cut(s) 469
PaeI GCATGC 1 cut(s) 469
PagI TCATGA 1 cut(s) 187
PfeI GAWTC 2 cut(s) 115, 127
PkrI GCNGC 1 cut(s) 16
PpuMI RGGWCCY 1 cut(s) 401
Psp5II RGGWCCY 1 cut(s) 401
PspN4I GGNNCC 2 cut(s) 402, 403
PspPI GGNCC 1 cut(s) 401
PspPPI RGGWCCY 1 cut(s) 401
PsuI RGATCY 2 cut(s) 338, 360
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 2 cut(s) 270, 282
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 3 cut(s) 247, 338, 360
Sau96I GGNCC 1 cut(s) 401
SetI ASST 6 cut(s) 45, 187, 196, 276, 331, 391
SfaNI GCATC 2 cut(s) 341, 436
SinI GGWCC 1 cut(s) 401
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
SphI GCATGC 1 cut(s) 469
Sse9I AATT 1 cut(s) 198
SsiI CCGC 2 cut(s) 14, 398
SspMI CTAG 2 cut(s) 318, 326
StyI CCWWGG 2 cut(s) 181, 405
TaaI ACNGT 2 cut(s) 208, 394
TaqI TCGA 1 cut(s) 310
TasI AATT 1 cut(s) 198
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 2 cut(s) 115, 127
Tru1I TTAA 2 cut(s) 270, 282
Tru9I TTAA 2 cut(s) 270, 282
TscAI CASTG 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 204, 212
TspRI CASTG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 401
XapI RAATTY 1 cut(s) 198
XceI RCATGY 1 cut(s) 469
XspI CTAG 2 cut(s) 318, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.