Rorug01G0085000

Belongs to the universal ribosomal protein uL24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004210
Physical Location & Seq
Reverse (-)
13833784 .. 13834350
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0085000.1

Sequence Viewer

Length: 567 bp
ATGGGTAGGACACAAGCAGATTTTGCCAAGTTCCGAAACCGAGAAACCAGAAATATTTCTACTTCTCGATGCCTTTATGACGTATTCTTGAGTTTCAGAGGCAAAGACACTCGAAAGGGTTTTACTGATCACCTCTACACGGCTCTGGTGGAATCTGGAATCCGCACGTTCAGAGACGACGATGAACTTGAAAGAGGAGAAGACATTACGAGAAATTTGCCGAAAGGAATCCGAGAGTCACACTGTTCTATCATTGTGTTTTCGAAAGACTACGCGTCCTCTCAATGGTGCCTTAACGAGCTTGTGATGATCCTTCACTACAAGAGGACCTCCGGCCATGCAGTTTTACCGGTCTTTTACGACGTTGACCCGTCGGAAGTGAGGAACCAGAGTGGAAGTTTTGCAAAACCCTTTGAGGAACTGGAGCGACTGGTGAAGCCAATGTCCAGAATATTTGACAAGGAGTTTGGTGCCTTTTGGTCGACGGAGGTGGAAGGGTGGAGGGCCGCACTTCGAGAAGTTGCGGATCTGGCAGGGATGAATTTGCGAAATCAAGCTGATGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KOW ribosomal_L24

Protein Analysis

188

Amino Acids

21.7

Weight (kDa)

6.44

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 26 - 184 6.7e-43 TIR domain
TIR_2 PF13676 28 - 125 3.9e-18 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 288, 470
AccI GTMKAC 1 cut(s) 482
AccII CGCG 1 cut(s) 275
AciI CCGC 3 cut(s) 163, 507, 524
AclWI GGATC 2 cut(s) 304, 534
AcoI YGGCCR 1 cut(s) 334
AcsI RAATTY 2 cut(s) 214, 541
AfiI CCNNNNNNNGG 2 cut(s) 139, 285
AflIII ACRYGT 1 cut(s) 273
AgeI ACCGGT 1 cut(s) 349
AgsI TTSAA 1 cut(s) 191
AhdI GACNNNNNGTC 1 cut(s) 274
AluBI AGCT 2 cut(s) 301, 557
AluI AGCT 2 cut(s) 301, 557
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 2 cut(s) 304, 534
AoxI GGCC 2 cut(s) 334, 504
ApoI RAATTY 2 cut(s) 214, 541
ArsI GACNNNNNNTTYG 2 cut(s) 449, 481
AsiGI ACCGGT 1 cut(s) 349
Asp700I GAANNNNTTC 1 cut(s) 55
AspS9I GGNCC 2 cut(s) 327, 504
AsuHPI GGTGA 2 cut(s) 122, 445
AsuII TTCGAA 1 cut(s) 263
AvaII GGWCC 1 cut(s) 327
BanI GGYRCC 2 cut(s) 288, 470
BbsI GAAGAC 1 cut(s) 207
BccI CCATC 1 cut(s) 554
BceAI ACGGC 1 cut(s) 156
BcgI CGANNNNNNTGC 2 cut(s) 199, 233
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 168
BisI GCNGC 1 cut(s) 507
BlsI GCNGC 1 cut(s) 508
Bme18I GGWCC 1 cut(s) 327
BmeRI GACNNNNNGTC 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 327, 504
BmiI GGNNCC 3 cut(s) 290, 386, 472
BmsI GCATC 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 207
BpmI CTGGAG 1 cut(s) 443
Bpu14I TTCGAA 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 109
BsaWI WCCGGW 1 cut(s) 349
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 285
Bse118I RCCGGY 1 cut(s) 349
Bse1I ACTGG 2 cut(s) 426, 435
BseGI GGATG 1 cut(s) 543
BseLI CCNNNNNNNGG 2 cut(s) 139, 285
BseNI ACTGG 2 cut(s) 426, 435
BseRI GAGGAG 1 cut(s) 210
Bsh1236I CGCG 1 cut(s) 275
BshFI GGCC 2 cut(s) 336, 506
BshNI GGYRCC 2 cut(s) 288, 470
BshTI ACCGGT 1 cut(s) 349
BsiSI CCGG 2 cut(s) 333, 350
BslI CCNNNNNNNGG 2 cut(s) 139, 285
BsmAI GTCTC 1 cut(s) 168
BsmBI CGTCTC 1 cut(s) 168
BsnI GGCC 2 cut(s) 336, 506
Bsp119I TTCGAA 1 cut(s) 263
Bsp143I GATC 3 cut(s) 127, 309, 526
BspACI CCGC 3 cut(s) 163, 507, 524
BspANI GGCC 2 cut(s) 336, 506
BspFNI CGCG 1 cut(s) 275
BspLI GGNNCC 3 cut(s) 290, 386, 472
BspPI GGATC 2 cut(s) 304, 534
BspT104I TTCGAA 1 cut(s) 263
BspT107I GGYRCC 2 cut(s) 288, 470
BsrFI RCCGGY 1 cut(s) 349
BsrI ACTGG 2 cut(s) 426, 435
BssAI RCCGGY 1 cut(s) 349
BssMI GATC 3 cut(s) 127, 309, 526
Bst4CI ACNGT 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 23
BstBI TTCGAA 1 cut(s) 263
BstF5I GGATG 1 cut(s) 543
BstFNI CGCG 1 cut(s) 275
BstKTI GATC 3 cut(s) 130, 312, 529
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 3 cut(s) 127, 309, 526
BstMWI GCNNNNNNNGC 2 cut(s) 23, 530
BstUI CGCG 1 cut(s) 275
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 526
BstYI RGATCY 1 cut(s) 526
BsuRI GGCC 2 cut(s) 336, 506
BtsCI GGATG 1 cut(s) 543
BtsIMutI CAGTG 1 cut(s) 241
Cfr10I RCCGGY 1 cut(s) 349
Cfr13I GGNCC 2 cut(s) 327, 504
CseI GACGC 1 cut(s) 264
CspAI ACCGGT 1 cut(s) 349
CviAII CATG 1 cut(s) 338
CviJI RGCY 6 cut(s) 143, 301, 336, 439, 506, 557
CviKI_1 RGCY 6 cut(s) 143, 301, 336, 439, 506, 557
DpnI GATC 3 cut(s) 129, 311, 528
DpnII GATC 3 cut(s) 127, 309, 526
DriI GACNNNNNGTC 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 334
Eam1105I GACNNNNNGTC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 327
EcoO109I RGGNCCY 1 cut(s) 327
Esp3I CGTCTC 1 cut(s) 168
FaeI CATG 1 cut(s) 341
FaiI YATR 2 cut(s) 78, 339
FatI CATG 1 cut(s) 337
FbaI TGATCA 1 cut(s) 127
FblI GTMKAC 1 cut(s) 482
Fnu4HI GCNGC 1 cut(s) 507
FokI GGATG 1 cut(s) 550
Fsp4HI GCNGC 1 cut(s) 507
GluI GCNGC 1 cut(s) 507
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 2 cut(s) 336, 506
HapII CCGG 2 cut(s) 333, 350
HgaI GACGC 1 cut(s) 264
Hin1II CATG 1 cut(s) 341
HincII GTYRAC 2 cut(s) 367, 483
HindII GTYRAC 2 cut(s) 367, 483
HinfI GANTC 4 cut(s) 152, 159, 228, 236
HpaII CCGG 2 cut(s) 333, 350
HphI GGTGA 2 cut(s) 122, 445
Hpy166II GTNNAC 2 cut(s) 367, 483
Hpy188I TCNGA 5 cut(s) 35, 98, 173, 233, 376
Hpy188III TCNNGA 5 cut(s) 66, 88, 156, 447, 515
Hpy8I GTNNAC 2 cut(s) 367, 483
Hpy99I CGWCG 4 cut(s) 182, 365, 376, 487
HpyAV CCTTC 2 cut(s) 323, 488
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4IV ACGT 3 cut(s) 81, 167, 363
HpyCH4V TGCA 2 cut(s) 341, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 530
HpySE526I ACGT 3 cut(s) 81, 167, 363
Hsp92II CATG 1 cut(s) 341
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 3 cut(s) 127, 309, 526
LmnI GCTCC 1 cut(s) 424
LweI GCATC 1 cut(s) 59
MaeII ACGT 3 cut(s) 81, 167, 363
MaeIII GTNAC 1 cut(s) 237
MalI GATC 3 cut(s) 129, 311, 528
MboI GATC 3 cut(s) 127, 309, 526
MboII GAAGA 1 cut(s) 212
MflI RGATCY 1 cut(s) 526
MluCI AATT 2 cut(s) 214, 541
MluI ACGCGT 1 cut(s) 273
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 354
MroXI GAANNNNTTC 1 cut(s) 55
MseI TTAA 1 cut(s) 294
MspI CCGG 2 cut(s) 333, 350
MvnI CGCG 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 23, 530
NdeII GATC 3 cut(s) 127, 309, 526
NlaIII CATG 1 cut(s) 341
NlaIV GGNNCC 3 cut(s) 290, 386, 472
NmuCI GTSAC 1 cut(s) 237
NspV TTCGAA 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 55
PfeI GAWTC 3 cut(s) 152, 159, 228
PinAI ACCGGT 1 cut(s) 349
PkrI GCNGC 1 cut(s) 508
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PpuMI RGGWCCY 1 cut(s) 327
Psp5II RGGWCCY 1 cut(s) 327
PspN4I GGNNCC 3 cut(s) 290, 386, 472
PspPI GGNCC 2 cut(s) 327, 504
PspPPI RGGWCCY 1 cut(s) 327
PsuI RGATCY 1 cut(s) 526
SalI GTCGAC 1 cut(s) 481
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 1 cut(s) 507
Sau3AI GATC 3 cut(s) 127, 309, 526
Sau96I GGNCC 2 cut(s) 327, 504
SchI GAGTC 1 cut(s) 245
SetI ASST 8 cut(s) 84, 135, 170, 303, 332, 366, 492, 559
SfaNI GCATC 1 cut(s) 59
SfuI TTCGAA 1 cut(s) 263
SinI GGWCC 1 cut(s) 327
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 2 cut(s) 214, 541
SsiI CCGC 3 cut(s) 163, 507, 524
SspI AATATT 2 cut(s) 55, 453
TaaI ACNGT 1 cut(s) 245
TaiI ACGT 3 cut(s) 84, 170, 366
TaqI TCGA 5 cut(s) 67, 112, 263, 482, 514
TasI AATT 2 cut(s) 214, 541
TauI GCSGC 1 cut(s) 509
TfiI GAWTC 3 cut(s) 152, 159, 228
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 1 cut(s) 248
TseFI GTSAC 1 cut(s) 237
Tsp45I GTSAC 1 cut(s) 237
TspDTI ATGAA 2 cut(s) 198, 554
TspGWI ACGGA 1 cut(s) 500
TspRI CASTG 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 327
XapI RAATTY 2 cut(s) 214, 541
XmiI GTMKAC 1 cut(s) 482
XmnI GAANNNNTTC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.