Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005311

Physical Location & Seq

Genomic Coordinates Forward (+)

22843970 .. 22844362

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1140000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGGATGAGAGTGAGAGCCATGGGGGCACTGCCGGACCTCATTTGGAGTCTCCAGAAGGAAGCTCACCTGAAACTCGCAAACCCGCAATTGTTGTCGTCGCTGAGACGCGCATTCTCTCTTTACAATCAGATCAATCTCATCGATAACGTCCCCAGCGACCATCTTCAGTTTCAATGGTACACGGACACAGGGTTCACAGTGAATGTGGTGGACTACGAAGGAAGCTTACTGTGTGTTGGAAACATGTTGATGTCTTGGGCTCCCAACAAGTTCTCTCAAATCACTACTGATAGCCTATCCATCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

DUF498

Protein Analysis

104

Amino Acids

11.7

Weight (kDa)

6.01

Isoelectric Point (pI)

29.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44525 AT3G60150 AT3G60150 AT3G60150 AT3G60150
fragaria_vesca	FvH4_1g27010
malus_domestica	MD04G1140000.v1.1 MD07G1082600.v1.1 MD09G1285000.v1.1
prunus_persica	Prupe.2G110500_v2.0.a1 Prupe.2G110500_v2.0.a1 Prupe.3G009000_v2.0.a1
pyrus_communis	pycom07g06600 pycom09g19240
rosa_chinensis	RchiOBHm_Chr3g0487321
rosa_laevigata	RLG00000023015
rosa_multiflora	Rmu_sc0001955.1_g000031 Rmu_sc0033684.1_g000003
rosa_roxburghii	Rroxscaffold_6G00394910 Rroxscaffold_7G00195450
rosa_rugosa	Rorug03G0232800 Rorug03G0232800 Rorug03G0232900
rosa_samantha	Rh3AG280900 Rh3BG316700 Rh3CG314800 Rh3DG312700
rosa_wichuraiana	Rw3G024870 Rw3G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AciI	CCGC	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	1 cut(s)	176
AloI	GAACNNNNNNTCC	2 cut(s)	179, 211
AluBI	AGCT	2 cut(s)	65, 228
AluI	AGCT	2 cut(s)	65, 228
Alw26I	GTCTC	2 cut(s)	56, 100
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	265
BarI	GAAGNNNNNNTAC	2 cut(s)	213, 245
BccI	CCATC	2 cut(s)	171, 311
BcoDI	GTCTC	2 cut(s)	56, 100
BglI	GCCNNNNNGGC	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	38
Bsa29I	ATCGAT	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	21
BseCI	ATCGAT	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	31
BseYI	CCCAGC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	111
BshVI	ATCGAT	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	137
BsmAI	GTCTC	2 cut(s)	56, 100
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	31, 265
Bsp143I	GATC	1 cut(s)	132
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	96
BspDI	ATCGAT	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	2 cut(s)	202, 234
BstDEI	CTNAG	1 cut(s)	104
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	12
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	1 cut(s)	135
BstMAI	GTCTC	2 cut(s)	56, 100
BstMBI	GATC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	250
BstSLI	GKGCMC	1 cut(s)	31
BstUI	CGCG	1 cut(s)	111
Bsu15I	ATCGAT	1 cut(s)	144
BsuTUI	ATCGAT	1 cut(s)	144
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	12
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	29, 207
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	37
ClaI	ATCGAT	1 cut(s)	144
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	2 cut(s)	22, 247
CviJI	RGCY	5 cut(s)	20, 65, 228, 263, 297
CviKI_1	RGCY	5 cut(s)	20, 65, 228, 263, 297
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	2 cut(s)	25, 250
FaiI	YATR	2 cut(s)	23, 248
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	2 cut(s)	21, 246
FauI	CCCGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	19
FriOI	GRGCYC	1 cut(s)	265
GlaI	GCGC	1 cut(s)	112
GsaI	CCCAGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	38
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	2 cut(s)	25, 250
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	3 cut(s)	183, 198, 214
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	3 cut(s)	183, 198, 214
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	52, 215
HpyCH4III	ACNGT	2 cut(s)	202, 234
HpyCH4IV	ACGT	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	25, 250
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	5 cut(s)	48, 68, 83, 169, 177
MaeII	ACGT	1 cut(s)	150
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	1 cut(s)	158
MfeI	CAATTG	1 cut(s)	89
MhlI	GDGCHC	2 cut(s)	31, 265
MluCI	AATT	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	58
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	1 cut(s)	50
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	1 cut(s)	35
MunI	CAATTG	1 cut(s)	89
Mva1269I	GAATGC	1 cut(s)	113
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	2 cut(s)	25, 250
NlaIV	GGNNCC	1 cut(s)	264
NspI	RCATGY	1 cut(s)	250
PciI	ACATGT	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PctI	GAATGC	1 cut(s)	113
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
PscI	ACATGT	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	37
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	251
Sau3AI	GATC	1 cut(s)	132
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	58
SduI	GDGCHC	2 cut(s)	31, 265
SetI	ASST	5 cut(s)	42, 67, 72, 153, 230
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	251
Sse9I	AATT	1 cut(s)	89
SsiI	CCGC	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	202, 234
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	1 cut(s)	144
TasI	AATT	1 cut(s)	89
TscAI	CASTG	2 cut(s)	36, 207
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	2 cut(s)	36, 207
VpaK11BI	GGWCC	1 cut(s)	37
XceI	RCATGY	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.