Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005311

Physical Location & Seq

Genomic Coordinates Forward (+)

37765263 .. 37775269

Gene Structure 10007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00195450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGGGTATTCATGGCCAGTTGCTTTTAATCTTTTCATTGACATCTTACTTTATTATTTTATTTCAGAGATTTTGATTCTTGGTTGTGGGAGATCCGTAGATCCTGAAGTAAGACGTTTCATTCGATCTACTGGAATGAAGTTAGAAGCTGTTGACTCGAAATTCTTATTGCCGTACAACGAAAAACAGGACTTGTTCTTAGGCAAGGCTGCAGCTCAAGGGAATGATGGAATTTCCGGAGATTTGATCAAGGAAGAAGAGAGCTATTATGGAAGAAATGATCAGTTAGCAGAGATGATATGTAGTTTGCAGAAGGCAAGCAGAAAACAAGTTATGAAGTCTCTGACCAAGGCAGTAGATACACTGCGGATTATTCATGGGACAAATAGATTTATAGCAATAGAACGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

DUF498

Protein Analysis

137

Amino Acids

15.6

Weight (kDa)

6.6

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44525 AT3G60150 AT3G60150 AT3G60150 AT3G60150
fragaria_vesca	FvH4_1g27010
malus_domestica	MD04G1140000.v1.1 MD07G1082600.v1.1 MD09G1285000.v1.1
prunus_persica	Prupe.2G110500_v2.0.a1 Prupe.2G110500_v2.0.a1 Prupe.3G009000_v2.0.a1
pyrus_communis	pycom07g06600 pycom09g19240
rosa_chinensis	RchiOBHm_Chr3g0487321
rosa_laevigata	RLG00000023015
rosa_multiflora	Rmu_sc0001955.1_g000031 Rmu_sc0033684.1_g000003
rosa_roxburghii	Rroxscaffold_6G00394910 Rroxscaffold_7G00195450
rosa_rugosa	Rorug03G0232800 Rorug03G0232800 Rorug03G0232900
rosa_samantha	Rh3AG280900 Rh3BG316700 Rh3CG314800 Rh3DG312700
rosa_wichuraiana	Rw3G024870 Rw3G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	236
AciI	CCGC	1 cut(s)	367
AclWI	GGATC	2 cut(s)	87, 95
AcoI	YGGCCR	1 cut(s)	14
AcsI	RAATTY	2 cut(s)	161, 231
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	1 cut(s)	176
AluBI	AGCT	3 cut(s)	149, 215, 264
AluI	AGCT	3 cut(s)	149, 215, 264
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	2 cut(s)	87, 95
Aor13HI	TCCGGA	1 cut(s)	236
AoxI	GGCC	1 cut(s)	14
ApeKI	GCWGC	2 cut(s)	209, 212
ApoI	RAATTY	2 cut(s)	161, 231
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
BalI	TGGCCA	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	196, 224
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	157
BclI	TGATCA	2 cut(s)	246, 280
BcoDI	GTCTC	1 cut(s)	345
BfmI	CTRYAG	1 cut(s)	210
BisI	GCNGC	2 cut(s)	210, 213
BlsI	GCNGC	2 cut(s)	211, 214
BpuEI	CTTGAG	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	348
BsaWI	WCCGGW	1 cut(s)	236
Bse1I	ACTGG	2 cut(s)	17, 136
BseAI	TCCGGA	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	348
BseNI	ACTGG	2 cut(s)	17, 136
BseXI	GCAGC	2 cut(s)	196, 224
BshFI	GGCC	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	394
BsmAI	GTCTC	1 cut(s)	345
BsmFI	GGGAC	1 cut(s)	394
BsnI	GGCC	1 cut(s)	16
Bsp13I	TCCGGA	1 cut(s)	236
Bsp143I	GATC	5 cut(s)	92, 100, 125, 246, 280
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	1 cut(s)	16
BspEI	TCCGGA	1 cut(s)	236
BspMAI	CTGCAG	1 cut(s)	214
BspPI	GGATC	2 cut(s)	87, 95
BsrI	ACTGG	2 cut(s)	17, 136
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	5 cut(s)	92, 100, 125, 246, 280
BssT1I	CCWWGG	1 cut(s)	348
Bst6I	CTCTTC	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	1 cut(s)	199
BstKTI	GATC	5 cut(s)	95, 103, 128, 249, 283
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	5 cut(s)	92, 100, 125, 246, 280
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	196, 224
BstX2I	RGATCY	2 cut(s)	92, 100
BstYI	RGATCY	2 cut(s)	92, 100
BsuRI	GGCC	1 cut(s)	16
BtsI	GCAGTG	1 cut(s)	362
BtsIMutI	CAGTG	1 cut(s)	362
Cac8I	GCNNGC	1 cut(s)	319
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	2 cut(s)	12, 377
CviJI	RGCY	5 cut(s)	16, 149, 209, 215, 264
CviKI_1	RGCY	5 cut(s)	16, 149, 209, 215, 264
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	5 cut(s)	94, 102, 127, 248, 282
DpnII	GATC	5 cut(s)	92, 100, 125, 246, 280
EaeI	YGGCCR	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	348
Eco57I	CTGAAG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	2 cut(s)	15, 380
FaiI	YATR	6 cut(s)	13, 270, 301, 335, 378, 395
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	2 cut(s)	11, 376
FbaI	TGATCA	2 cut(s)	246, 280
Fnu4HI	GCNGC	2 cut(s)	210, 213
Fsp4HI	GCNGC	2 cut(s)	210, 213
GluI	GCNGC	2 cut(s)	210, 213
HaeIII	GGCC	1 cut(s)	16
HapII	CCGG	1 cut(s)	237
Hin1II	CATG	2 cut(s)	15, 380
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	76, 155
HpaII	CCGG	1 cut(s)	237
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	67, 345
Hpy188III	TCNNGA	2 cut(s)	104, 237
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	212, 310
HpyF3I	CTNAG	1 cut(s)	199
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	2 cut(s)	15, 380
Kpn2I	TCCGGA	1 cut(s)	236
Ksp22I	TGATCA	2 cut(s)	246, 280
Kzo9I	GATC	5 cut(s)	92, 100, 125, 246, 280
LpnPI	CCDG	5 cut(s)	30, 117, 117, 173, 250
Lsp1109I	GCAGC	2 cut(s)	196, 224
MaeII	ACGT	1 cut(s)	115
MalI	GATC	5 cut(s)	94, 102, 127, 248, 282
MboI	GATC	5 cut(s)	92, 100, 125, 246, 280
MboII	GAAGA	3 cut(s)	266, 269, 285
MflI	RGATCY	2 cut(s)	92, 100
MlsI	TGGCCA	1 cut(s)	16
MluCI	AATT	2 cut(s)	161, 231
MluNI	TGGCCA	1 cut(s)	16
MlyI	GAGTC	1 cut(s)	149
Mox20I	TGGCCA	1 cut(s)	16
MroI	TCCGGA	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	16
MseI	TTAA	1 cut(s)	27
Msp20I	TGGCCA	1 cut(s)	16
MspI	CCGG	1 cut(s)	237
NdeII	GATC	5 cut(s)	92, 100, 125, 246, 280
NlaIII	CATG	2 cut(s)	15, 380
PcsI	WCGNNNNNNNCGW	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	211, 214
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PstI	CTGCAG	1 cut(s)	214
PsuI	RGATCY	2 cut(s)	92, 100
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	2 cut(s)	210, 213
Sau3AI	GATC	5 cut(s)	92, 100, 125, 246, 280
SchI	GAGTC	1 cut(s)	149
SetI	ASST	4 cut(s)	118, 151, 217, 266
SfcI	CTRYAG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	2 cut(s)	161, 231
SsiI	CCGC	1 cut(s)	367
StyI	CCWWGG	1 cut(s)	348
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	2 cut(s)	124, 158
TasI	AATT	2 cut(s)	161, 231
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	1 cut(s)	369
TseI	GCWGC	2 cut(s)	209, 212
TspDTI	ATGAA	5 cut(s)	25, 109, 152, 350, 365
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	1 cut(s)	369
XapI	RAATTY	2 cut(s)	161, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.