Rroxscaffold_6G00394910

NADH dehydrogenase ubiquinone 1 alpha subcomplex assembly factor 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005311
Physical Location & Seq
Forward (+)
15787239 .. 15792068
4830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00394910.1

Sequence Viewer

Length: 279 bp
ATGCTCATGTCTTGGGCTCCCAAAAAATTCTCCGATATCACTCCTGACAGCTTATCAATGTTCCAACTTATGCGGCCTATACCAGAGATTTTAATTCTTGGCTGTGGGAGATACATTGAACCCGTAGATCCTGAAGTACGACGCTTCATTTGGTCTACTGGAATGAAGTTAGAAGCCGTTGACTCGAGAAACGCCATATCAACTTACAACATACTGAATGAGGAAGGTAGGATCGTGGCTGCTGCACTTTTACCTTACGGATGCGGAGTTTCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
DUF498

Protein Analysis

92

Amino Acids

10.28

Weight (kDa)

5.28

Isoelectric Point (pI)

54.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF498 PF04430 3 - 84 1.3e-25 Protein of unknown function (DUF498/DUF598)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 155
AciI CCGC 2 cut(s) 73, 264
AclWI GGATC 2 cut(s) 122, 239
AcsI RAATTY 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 1 cut(s) 138
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 1 cut(s) 51
AluI AGCT 1 cut(s) 51
AlwI GGATC 2 cut(s) 122, 239
Ama87I CYCGRG 1 cut(s) 184
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 2 cut(s) 239, 242
ApoI RAATTY 1 cut(s) 26
ArsI GACNNNNNNTTYG 2 cut(s) 132, 164
AvaI CYCGRG 1 cut(s) 184
BanII GRGCYC 1 cut(s) 19
BbvI GCAGC 2 cut(s) 226, 229
BceAI ACGGC 1 cut(s) 161
BisI GCNGC 3 cut(s) 74, 240, 243
BlsI GCNGC 3 cut(s) 75, 241, 244
BmeT110I CYCGRG 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 266
BseNI ACTGG 1 cut(s) 163
BseXI GCAGC 2 cut(s) 226, 229
BsgI GTGCAG 1 cut(s) 228
BshFI GGCC 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 184
BsnI GGCC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 2 cut(s) 127, 231
BspACI CCGC 2 cut(s) 73, 264
BspANI GGCC 1 cut(s) 76
BspHI TCATGA 1 cut(s) 275
BspLI GGNNCC 1 cut(s) 18
BspPI GGATC 2 cut(s) 122, 239
BsrI ACTGG 1 cut(s) 163
BssMI GATC 2 cut(s) 127, 231
BstF5I GGATG 1 cut(s) 266
BstKTI GATC 2 cut(s) 130, 234
BstMBI GATC 2 cut(s) 127, 231
BstV1I GCAGC 2 cut(s) 226, 229
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 266
CciI TCATGA 1 cut(s) 275
CseI GACGC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 137
CviAII CATG 2 cut(s) 7, 276
CviJI RGCY 6 cut(s) 17, 51, 76, 102, 176, 239
CviKI_1 RGCY 6 cut(s) 17, 51, 76, 102, 176, 239
CviQI GTAC 1 cut(s) 137
DpnI GATC 2 cut(s) 129, 233
DpnII GATC 2 cut(s) 127, 231
Eco24I GRGCYC 1 cut(s) 19
Eco32I GATATC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 184
EcoRV GATATC 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 19
FaeI CATG 2 cut(s) 10, 279
FaiI YATR 6 cut(s) 8, 71, 80, 197, 212, 277
FatI CATG 2 cut(s) 6, 275
FblI GTMKAC 1 cut(s) 155
Fnu4HI GCNGC 3 cut(s) 74, 240, 243
FokI GGATG 1 cut(s) 273
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 3 cut(s) 74, 240, 243
GluI GCNGC 3 cut(s) 74, 240, 243
HaeIII GGCC 1 cut(s) 76
HgaI GACGC 1 cut(s) 150
Hin1II CATG 2 cut(s) 10, 279
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 1 cut(s) 182
Hpy166II GTNNAC 2 cut(s) 156, 181
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 4 cut(s) 44, 131, 186, 276
Hpy8I GTNNAC 2 cut(s) 156, 181
Hpy99I CGWCG 1 cut(s) 144
HpyAV CCTTC 1 cut(s) 218
HpyCH4V TGCA 1 cut(s) 245
Hsp92II CATG 2 cut(s) 10, 279
Kzo9I GATC 2 cut(s) 127, 231
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 4 cut(s) 57, 96, 144, 144
Lsp1109I GCAGC 2 cut(s) 226, 229
LweI GCATC 1 cut(s) 251
MalI GATC 2 cut(s) 129, 233
MboI GATC 2 cut(s) 127, 231
MboII GAAGA 1 cut(s) 264
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 2 cut(s) 26, 93
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 1 cut(s) 214
MseI TTAA 1 cut(s) 92
NdeII GATC 2 cut(s) 127, 231
NlaIII CATG 2 cut(s) 10, 279
NlaIV GGNNCC 1 cut(s) 18
PaeR7I CTCGAG 1 cut(s) 184
PagI TCATGA 1 cut(s) 275
PkrI GCNGC 3 cut(s) 75, 241, 244
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 18
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 3 cut(s) 74, 240, 243
Sau3AI GATC 2 cut(s) 127, 231
SchI GAGTC 1 cut(s) 176
SduI GDGCHC 1 cut(s) 19
SetI ASST 3 cut(s) 53, 229, 256
SfaNI GCATC 1 cut(s) 251
Sfr274I CTCGAG 1 cut(s) 184
SlaI CTCGAG 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 2 cut(s) 26, 93
SsiI CCGC 2 cut(s) 73, 264
TaqI TCGA 1 cut(s) 185
TasI AATT 2 cut(s) 26, 93
TauI GCSGC 1 cut(s) 76
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TseI GCWGC 2 cut(s) 239, 242
TspDTI ATGAA 3 cut(s) 136, 179, 264
TspGWI ACGGA 1 cut(s) 273
XapI RAATTY 1 cut(s) 26
XhoI CTCGAG 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.