Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005311

Physical Location & Seq

Genomic Coordinates Reverse (-)

561865 .. 565156

Gene Structure 3292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G009000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGGTTGAGAGCGAGAGGTGTGGGGGCATTGCCAAACCTCATTCGAAGCCTCCGGAAGGAAGCCCACCCAAAGCAACAATCACTTCCGTCTCTGAGGCGCGGCTTCTCTCTCTACGATCAGATCAATCTCATCGACAACGTCCCTGATGACCAGCTTCGCTTTCAACGGTACACTGAGACAGGATTCAGAGTGAATGGGGTGGACTATGAAGGAAGCTTGCTTTGTGTTGGAAATATGTTGATGTCTTGGGCTCCCACCAAATTCTCTCATGTCACTCCTGATAGCTTATCAATGTTCCAAATCGTGCGGCCTATACCTGAGATTTTGATTCTTGGCACTGGGAGAAACATTGAACCCGTAGATCCTGAACTACGACGCTTCATTCGCTCTACGGGAATGAAGTTGGAAGCCGTTGACTCGAGAAACGCCATATCAACTTACAACATACTGAATGAGGAAGGTAGGATTGTGGCTGCTGCGCTTTTACCGTACGGAGCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

DUF498

Protein Analysis

169

Amino Acids

18.8

Weight (kDa)

9.24

Isoelectric Point (pI)

53.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44525 AT3G60150 AT3G60150 AT3G60150 AT3G60150
fragaria_vesca	FvH4_1g27010
malus_domestica	MD04G1140000.v1.1 MD07G1082600.v1.1 MD09G1285000.v1.1
prunus_persica	Prupe.2G110500_v2.0.a1 Prupe.2G110500_v2.0.a1 Prupe.3G009000_v2.0.a1
pyrus_communis	pycom07g06600 pycom09g19240
rosa_chinensis	RchiOBHm_Chr3g0487321
rosa_laevigata	RLG00000023015
rosa_multiflora	Rmu_sc0001955.1_g000031 Rmu_sc0033684.1_g000003
rosa_roxburghii	Rroxscaffold_6G00394910 Rroxscaffold_7G00195450
rosa_rugosa	Rorug03G0232800 Rorug03G0232800 Rorug03G0232900
rosa_samantha	Rh3AG280900 Rh3BG316700 Rh3CG314800 Rh3DG312700
rosa_wichuraiana	Rw3G024870 Rw3G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	102
AccIII	TCCGGA	1 cut(s)	54
AciI	CCGC	2 cut(s)	102, 310
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	263
AfaI	GTAC	2 cut(s)	173, 494
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	2 cut(s)	167, 356
AluBI	AGCT	4 cut(s)	157, 219, 288, 500
AluI	AGCT	4 cut(s)	157, 219, 288, 500
Alw26I	GTCTC	2 cut(s)	96, 173
AlwI	GGATC	1 cut(s)	359
Ama87I	CYCGRG	1 cut(s)	421
Aor13HI	TCCGGA	1 cut(s)	54
AoxI	GGCC	1 cut(s)	311
ApeKI	GCWGC	2 cut(s)	476, 479
ApoI	RAATTY	1 cut(s)	263
ArsI	GACNNNNNNTTYG	2 cut(s)	369, 401
AspLEI	GCGC	2 cut(s)	102, 484
AsuII	TTCGAA	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	421
BanII	GRGCYC	1 cut(s)	256
BbvI	GCAGC	2 cut(s)	463, 466
BceAI	ACGGC	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	96, 173
BisI	GCNGC	4 cut(s)	103, 311, 477, 480
BlsI	GCNGC	4 cut(s)	104, 312, 478, 481
BmeT110I	CYCGRG	1 cut(s)	421
BmiI	GGNNCC	1 cut(s)	255
BmrI	ACTGGG	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	46
BsaWI	WCCGGW	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	346
Bse3DI	GCAATG	1 cut(s)	29
BseAI	TCCGGA	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	1 cut(s)	29
BseMII	CTCAG	3 cut(s)	86, 168, 312
BseNI	ACTGG	1 cut(s)	346
BseXI	GCAGC	2 cut(s)	463, 466
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	421
BsiSI	CCGG	1 cut(s)	55
BsiWI	CGTACG	1 cut(s)	492
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	2 cut(s)	96, 173
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	313
BsoBI	CYCGRG	1 cut(s)	421
Bsp119I	TTCGAA	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp13I	TCCGGA	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	118, 123, 364
BspACI	CCGC	2 cut(s)	102, 310
BspANI	GGCC	1 cut(s)	313
BspCNI	CTCAG	3 cut(s)	87, 169, 313
BspEI	TCCGGA	1 cut(s)	54
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	359
BspT104I	TTCGAA	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	346
BssMI	GATC	3 cut(s)	118, 123, 364
Bst4CI	ACNGT	2 cut(s)	171, 492
BstBI	TTCGAA	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	221
BstDEI	CTNAG	3 cut(s)	95, 177, 321
BstENI	CCTNNNNNAGG	1 cut(s)	56
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	2 cut(s)	102, 484
BstKTI	GATC	3 cut(s)	121, 126, 367
BstMAI	GTCTC	2 cut(s)	96, 173
BstMBI	GATC	3 cut(s)	118, 123, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	387
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	463, 466
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	1 cut(s)	313
BtsIMutI	CAGTG	2 cut(s)	174, 339
Cac8I	GCNNGC	1 cut(s)	221
CfoI	GCGC	2 cut(s)	102, 484
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	2 cut(s)	172, 493
CviAII	CATG	1 cut(s)	272
CviQI	GTAC	2 cut(s)	172, 493
DdeI	CTNAG	3 cut(s)	95, 177, 321
DpnI	GATC	3 cut(s)	120, 125, 366
DpnII	GATC	3 cut(s)	118, 123, 364
Eco24I	GRGCYC	1 cut(s)	256
Eco88I	CYCGRG	1 cut(s)	421
EcoNI	CCTNNNNNAGG	1 cut(s)	56
EcoT38I	GRGCYC	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	1 cut(s)	275
FaiI	YATR	6 cut(s)	210, 239, 273, 317, 434, 449
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	1 cut(s)	271
Fnu4HI	GCNGC	4 cut(s)	103, 311, 477, 480
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	4 cut(s)	103, 311, 477, 480
GlaI	GCGC	2 cut(s)	101, 483
GluI	GCNGC	4 cut(s)	103, 311, 477, 480
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	1 cut(s)	55
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	2 cut(s)	102, 484
Hin1II	CATG	1 cut(s)	275
Hin6I	GCGC	2 cut(s)	100, 482
HinP1I	GCGC	2 cut(s)	100, 482
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	217
HinfI	GANTC	3 cut(s)	186, 331, 419
HpaII	CCGG	1 cut(s)	55
Hpy166II	GTNNAC	3 cut(s)	174, 205, 418
Hpy188I	TCNGA	3 cut(s)	96, 123, 191
Hpy188III	TCNNGA	4 cut(s)	55, 281, 368, 423
Hpy8I	GTNNAC	3 cut(s)	174, 205, 418
Hpy99I	CGWCG	1 cut(s)	381
HpyAV	CCTTC	3 cut(s)	52, 206, 455
HpyCH4III	ACNGT	2 cut(s)	171, 492
HpyCH4IV	ACGT	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	387
HpyF3I	CTNAG	3 cut(s)	95, 177, 321
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	275
HspAI	GCGC	2 cut(s)	100, 482
Kpn2I	TCCGGA	1 cut(s)	54
Kzo9I	GATC	3 cut(s)	118, 123, 364
LmnI	GCTCC	2 cut(s)	259, 497
LpnPI	CCDG	8 cut(s)	68, 159, 167, 168, 294, 327, 333, 381
Lsp1109I	GCAGC	2 cut(s)	463, 466
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	3 cut(s)	120, 125, 366
MboI	GATC	3 cut(s)	118, 123, 364
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	1 cut(s)	263
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	2 cut(s)	211, 387
MnlI	CCTC	5 cut(s)	11, 50, 62, 90, 451
MroI	TCCGGA	1 cut(s)	54
MseI	TTAA	1 cut(s)	505
MspI	CCGG	1 cut(s)	55
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	387
NdeII	GATC	3 cut(s)	118, 123, 364
NlaIII	CATG	1 cut(s)	275
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	274
NspV	TTCGAA	1 cut(s)	46
PaeR7I	CTCGAG	1 cut(s)	421
PfeI	GAWTC	2 cut(s)	186, 331
Pfl23II	CGTACG	1 cut(s)	492
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	4 cut(s)	104, 312, 478, 481
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PspLI	CGTACG	1 cut(s)	492
PspN4I	GGNNCC	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	364
PsyI	GACNNNGTC	1 cut(s)	140
RsaI	GTAC	2 cut(s)	173, 494
RsaNI	GTAC	2 cut(s)	172, 493
SaqAI	TTAA	1 cut(s)	505
SatI	GCNGC	4 cut(s)	103, 311, 477, 480
Sau3AI	GATC	3 cut(s)	118, 123, 364
SchI	GAGTC	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	9 cut(s)	22, 42, 144, 159, 221, 290, 322, 466, 502
Sfr274I	CTCGAG	1 cut(s)	421
SfuI	TTCGAA	1 cut(s)	46
SlaI	CTCGAG	1 cut(s)	421
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
Sse9I	AATT	1 cut(s)	263
SsiI	CCGC	2 cut(s)	102, 310
TaaI	ACNGT	2 cut(s)	171, 492
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	3 cut(s)	46, 135, 422
TasI	AATT	1 cut(s)	263
TauI	GCSGC	2 cut(s)	105, 313
TfiI	GAWTC	2 cut(s)	186, 331
Tru1I	TTAA	1 cut(s)	505
Tru9I	TTAA	1 cut(s)	505
TscAI	CASTG	2 cut(s)	181, 346
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	2 cut(s)	476, 479
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	3 cut(s)	225, 373, 416
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	2 cut(s)	181, 346
Tth111I	GACNNNGTC	1 cut(s)	140
XagI	CCTNNNNNAGG	1 cut(s)	56
XapI	RAATTY	1 cut(s)	263
XhoI	CTCGAG	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.