Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005311

Physical Location & Seq

Genomic Coordinates Reverse (-)

5882957 .. 5886397

Gene Structure 3441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g06600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGGATGAGAGTGAGAGCCATGGGGGCACTGCCGAGCCTCATTCGGAGCCTCCAGAAGGAAGCCCACCCGAAACCCGCAAACCCGCAATCGCTGCCGTCGCTGAGACGCGCCTTCTCTCTCTACGATCAGATCAATCTCATCGACAACGTCCCCAGCGACCAGCTTCGGTTTCAACGGTACACGGACACAGGGTTCACAGTGAATGGGGTGGACTATGAAGGAAGCCTACTGTGTGTTGGAAACATGTTGATGTCTTGGGCTCCCAACAAGTTCTCTCAAATCACTACTGATAGCCTATCCATCTTTCGAACCGTGCGACCTGTACCAGAGATTTTGATAATTGGCTGTGGAAGGTACATTGAACCTGTAAGTCCTGAACTACAACGATTCATCCGGTCTACTGGAATGAAACTAGAAGCCATTGACACGAAAAATGCTGTATCGACCTACAACATACTCAATGAGGAAGGGAGGATTGTGGCTGCTGCACTTTTACCATACGGGATTTCCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

DUF498

Protein Analysis

173

Amino Acids

19.12

Weight (kDa)

9.0

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44525 AT3G60150 AT3G60150 AT3G60150 AT3G60150
fragaria_vesca	FvH4_1g27010
malus_domestica	MD04G1140000.v1.1 MD07G1082600.v1.1 MD09G1285000.v1.1
prunus_persica	Prupe.2G110500_v2.0.a1 Prupe.2G110500_v2.0.a1 Prupe.3G009000_v2.0.a1
pyrus_communis	pycom07g06600 pycom09g19240
rosa_chinensis	RchiOBHm_Chr3g0487321
rosa_laevigata	RLG00000023015
rosa_multiflora	Rmu_sc0001955.1_g000031 Rmu_sc0033684.1_g000003
rosa_roxburghii	Rroxscaffold_6G00394910 Rroxscaffold_7G00195450
rosa_rugosa	Rorug03G0232800 Rorug03G0232800 Rorug03G0232900
rosa_samantha	Rh3AG280900 Rh3BG316700 Rh3CG314800 Rh3DG312700
rosa_wichuraiana	Rw3G024870 Rw3G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	401
AccII	CGCG	1 cut(s)	111
AciI	CCGC	2 cut(s)	78, 86
AfaI	GTAC	3 cut(s)	182, 327, 359
AfiI	CCNNNNNNNGG	1 cut(s)	58
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	2 cut(s)	176, 365
AloI	GAACNNNNNNTCC	2 cut(s)	179, 211
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	100
ApeKI	GCWGC	3 cut(s)	94, 485, 488
AspLEI	GCGC	1 cut(s)	113
AsuII	TTCGAA	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	265
BarI	GAAGNNNNNNTAC	2 cut(s)	213, 245
BbvI	GCAGC	3 cut(s)	81, 472, 475
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	416
BglI	GCCNNNNNGGC	1 cut(s)	26
BisI	GCNGC	3 cut(s)	95, 486, 489
BlsI	GCNGC	3 cut(s)	96, 487, 490
BmiI	GGNNCC	2 cut(s)	50, 264
BpmI	CTGGAG	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	409
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	2 cut(s)	12, 393
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	409
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	3 cut(s)	81, 472, 475
BseYI	CCCAGC	1 cut(s)	155
BsgI	GTGCAG	1 cut(s)	474
Bsh1236I	CGCG	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	100
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	137
Bsp119I	TTCGAA	1 cut(s)	310
Bsp1286I	GDGCHC	2 cut(s)	31, 265
Bsp143I	GATC	2 cut(s)	127, 132
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	2 cut(s)	78, 86
BspCNI	CTCAG	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	515
BspLI	GGNNCC	2 cut(s)	50, 264
BspT104I	TTCGAA	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	409
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	2 cut(s)	127, 132
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	4 cut(s)	180, 202, 234, 316
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstBI	TTCGAA	1 cut(s)	310
BstDEI	CTNAG	1 cut(s)	104
BstDSI	CCRYGG	1 cut(s)	21
BstENI	CCTNNNNNAGG	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	12, 393
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	2 cut(s)	130, 135
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	2 cut(s)	127, 132
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 94, 100
BstNSI	RCATGY	1 cut(s)	250
BstSLI	GKGCMC	1 cut(s)	31
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	81, 472, 475
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	12, 393
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	29, 207
CciI	TCATGA	1 cut(s)	515
CfoI	GCGC	1 cut(s)	113
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	3 cut(s)	181, 326, 358
CviAII	CATG	3 cut(s)	22, 247, 516
CviQI	GTAC	3 cut(s)	181, 326, 358
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	2 cut(s)	129, 134
DpnII	GATC	2 cut(s)	127, 132
Eco130I	CCWWGG	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	265
EcoNI	CCTNNNNNAGG	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	3 cut(s)	25, 250, 519
FaiI	YATR	6 cut(s)	23, 219, 248, 458, 502, 517
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	3 cut(s)	21, 246, 515
FauI	CCCGC	2 cut(s)	85, 93
FblI	GTMKAC	1 cut(s)	401
Fnu4HI	GCNGC	3 cut(s)	95, 486, 489
FokI	GGATG	2 cut(s)	19, 380
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	3 cut(s)	95, 486, 489
FspBI	CTAG	1 cut(s)	416
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	3 cut(s)	95, 486, 489
GsaI	CCCAGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	38
HapII	CCGG	1 cut(s)	397
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	25, 250, 519
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	1 cut(s)	390
HpaII	CCGG	1 cut(s)	397
Hpy166II	GTNNAC	4 cut(s)	183, 198, 214, 402
Hpy188I	TCNGA	2 cut(s)	48, 132
Hpy188III	TCNNGA	3 cut(s)	55, 377, 516
Hpy8I	GTNNAC	4 cut(s)	183, 198, 214, 402
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	5 cut(s)	52, 124, 215, 348, 464
HpyCH4III	ACNGT	4 cut(s)	180, 202, 234, 316
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	1 cut(s)	491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 94, 100
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	25, 250, 519
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	127, 132
LmnI	GCTCC	2 cut(s)	48, 268
Lsp1109I	GCAGC	3 cut(s)	81, 472, 475
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	1 cut(s)	150
MalI	GATC	2 cut(s)	129, 134
MboI	GATC	2 cut(s)	127, 132
MhlI	GDGCHC	2 cut(s)	31, 265
MluCI	AATT	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	4 cut(s)	50, 62, 460, 468
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	1 cut(s)	397
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	26, 94, 100
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	2 cut(s)	127, 132
NlaIII	CATG	3 cut(s)	25, 250, 519
NlaIV	GGNNCC	2 cut(s)	50, 264
NmeAIII	GCCGAG	1 cut(s)	60
NspI	RCATGY	1 cut(s)	250
NspV	TTCGAA	1 cut(s)	310
PagI	TCATGA	1 cut(s)	515
PciI	ACATGT	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 316
PfeI	GAWTC	1 cut(s)	390
PflFI	GACNNNGTC	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	96, 487, 490
PscI	ACATGT	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	50, 264
PsyI	GACNNNGTC	1 cut(s)	149
RsaI	GTAC	3 cut(s)	182, 327, 359
RsaNI	GTAC	3 cut(s)	181, 326, 358
RseI	CAYNNNNRTG	1 cut(s)	251
SatI	GCNGC	3 cut(s)	95, 486, 489
Sau3AI	GATC	2 cut(s)	127, 132
SduI	GDGCHC	2 cut(s)	31, 265
SetI	ASST	6 cut(s)	153, 168, 325, 359, 370, 452
SfuI	TTCGAA	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	251
Sse9I	AATT	1 cut(s)	342
SsiI	CCGC	2 cut(s)	78, 86
SspMI	CTAG	1 cut(s)	416
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	4 cut(s)	180, 202, 234, 316
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	3 cut(s)	144, 310, 446
TasI	AATT	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	390
TscAI	CASTG	2 cut(s)	36, 207
TseI	GCWGC	3 cut(s)	94, 485, 488
TspDTI	ATGAA	3 cut(s)	234, 382, 425
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	2 cut(s)	36, 207
Tth111I	GACNNNGTC	1 cut(s)	149
XagI	CCTNNNNNAGG	1 cut(s)	56
XceI	RCATGY	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	401
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.