Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005311

Physical Location & Seq

Genomic Coordinates Forward (+)

16891582 .. 16894818

Gene Structure 3237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G110500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGGACGAGAGCAAGACTGCCAAGCCTCATTCGGAGCCTCCTAAAGGAAGCCCAGCCAAAACCCACATGCCAACAATCGCTGCCTTCGCTTAGACGCGCCTTCTCTCTCTACGATCAGATCAATCTCATTGACAACGTCCCTAATGACCAGCTTCGATTTCAACGGTACACGGACTCAGGGTTCACAGTGAATGGGGTGGACTATGAAGGAAGCTTGCTTTGTGTTGGAAACATGTTGATGTCTTGGGCTCCCAAGAAATTCTCTGAAATCACTCCTGATAGCCTGTCCATCTTCCAAACTGTGCGACCTGTGCCAGAGATTTTGATTCTTGGCTGTGGGAGGTACATTGAACCCGTAAGTCCTGAACTACAACGCTTCATCCGGTCTACTGGAATGAAATTAGAAGCCATTGACTCGAAAAATGCTGTATCAACCTACAATATACTCAATGAGGAAGGGAGGATTGTGGCTGCTGCGCTTTTACCGTATGGGATTTCGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

DUF498

Protein Analysis

169

Amino Acids

18.74

Weight (kDa)

8.47

Isoelectric Point (pI)

57.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44525 AT3G60150 AT3G60150 AT3G60150 AT3G60150
fragaria_vesca	FvH4_1g27010
malus_domestica	MD04G1140000.v1.1 MD07G1082600.v1.1 MD09G1285000.v1.1
prunus_persica	Prupe.2G110500_v2.0.a1 Prupe.2G110500_v2.0.a1 Prupe.3G009000_v2.0.a1
pyrus_communis	pycom07g06600 pycom09g19240
rosa_chinensis	RchiOBHm_Chr3g0487321
rosa_laevigata	RLG00000023015
rosa_multiflora	Rmu_sc0001955.1_g000031 Rmu_sc0033684.1_g000003
rosa_roxburghii	Rroxscaffold_6G00394910 Rroxscaffold_7G00195450
rosa_rugosa	Rorug03G0232800 Rorug03G0232800 Rorug03G0232900
rosa_samantha	Rh3AG280900 Rh3BG316700 Rh3CG314800 Rh3DG312700
rosa_wichuraiana	Rw3G024870 Rw3G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	389
AccII	CGCG	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	260
AfaI	GTAC	2 cut(s)	170, 347
AfiI	CCNNNNNNNGG	1 cut(s)	46
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	2 cut(s)	164, 353
AloI	GAACNNNNNNTCC	2 cut(s)	167, 199
AluBI	AGCT	2 cut(s)	154, 216
AluI	AGCT	2 cut(s)	154, 216
ApeKI	GCWGC	3 cut(s)	82, 473, 476
ApoI	RAATTY	1 cut(s)	260
AspLEI	GCGC	2 cut(s)	101, 481
BanII	GRGCYC	1 cut(s)	253
BbvI	GCAGC	3 cut(s)	69, 460, 463
BccI	CCATC	1 cut(s)	299
BisI	GCNGC	3 cut(s)	83, 474, 477
BlsI	GCNGC	3 cut(s)	84, 475, 478
BmiI	GGNNCC	2 cut(s)	38, 252
BsaWI	WCCGGW	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	397
BseGI	GGATG	1 cut(s)	381
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	397
BseXI	GCAGC	3 cut(s)	69, 460, 463
BseYI	CCCAGC	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	385
BslFI	GGGAC	2 cut(s)	19, 125
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmFI	GGGAC	2 cut(s)	19, 125
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	115, 120
BspCNI	CTCAG	1 cut(s)	191
BspFNI	CGCG	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	503
BspLI	GGNNCC	2 cut(s)	38, 252
BsrI	ACTGG	1 cut(s)	397
BssMI	GATC	2 cut(s)	115, 120
Bst4CI	ACNGT	4 cut(s)	168, 190, 304, 489
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	2 cut(s)	92, 178
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	381
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	2 cut(s)	101, 481
BstKTI	GATC	2 cut(s)	118, 123
BstMBI	GATC	2 cut(s)	115, 120
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 313
BstNSI	RCATGY	2 cut(s)	72, 238
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	3 cut(s)	69, 460, 463
BtsCI	GGATG	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	218
CciI	TCATGA	1 cut(s)	503
CfoI	GCGC	2 cut(s)	101, 481
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	169, 346
CviAII	CATG	3 cut(s)	69, 235, 504
CviQI	GTAC	2 cut(s)	169, 346
DdeI	CTNAG	2 cut(s)	92, 178
DpnI	GATC	2 cut(s)	117, 122
DpnII	GATC	2 cut(s)	115, 120
Eco24I	GRGCYC	1 cut(s)	253
EcoNI	CCTNNNNNAGG	1 cut(s)	44
EcoT38I	GRGCYC	1 cut(s)	253
FaeI	CATG	3 cut(s)	72, 238, 507
FaiI	YATR	6 cut(s)	70, 207, 236, 446, 492, 505
FaqI	GGGAC	2 cut(s)	19, 125
FatI	CATG	3 cut(s)	68, 234, 503
FblI	GTMKAC	1 cut(s)	389
Fnu4HI	GCNGC	3 cut(s)	83, 474, 477
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	3 cut(s)	83, 474, 477
GlaI	GCGC	2 cut(s)	100, 480
GluI	GCNGC	3 cut(s)	83, 474, 477
GsaI	CCCAGC	1 cut(s)	58
HapII	CCGG	1 cut(s)	385
HgaI	GACGC	1 cut(s)	105
HhaI	GCGC	2 cut(s)	101, 481
Hin1II	CATG	3 cut(s)	72, 238, 507
Hin6I	GCGC	2 cut(s)	99, 479
HinP1I	GCGC	2 cut(s)	99, 479
HindIII	AAGCTT	1 cut(s)	214
HinfI	GANTC	3 cut(s)	176, 328, 416
HpaII	CCGG	1 cut(s)	385
Hpy166II	GTNNAC	4 cut(s)	171, 186, 202, 390
Hpy188I	TCNGA	3 cut(s)	36, 120, 268
Hpy188III	TCNNGA	3 cut(s)	278, 365, 504
Hpy8I	GTNNAC	4 cut(s)	171, 186, 202, 390
HpyAV	CCTTC	4 cut(s)	96, 112, 203, 452
HpyCH4III	ACNGT	4 cut(s)	168, 190, 304, 489
HpyCH4IV	ACGT	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 313
HpyF3I	CTNAG	2 cut(s)	92, 178
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	72, 238, 507
HspAI	GCGC	2 cut(s)	99, 479
Kzo9I	GATC	2 cut(s)	115, 120
LmnI	GCTCC	2 cut(s)	36, 256
Lsp1109I	GCAGC	3 cut(s)	69, 460, 463
MaeII	ACGT	1 cut(s)	138
MalI	GATC	2 cut(s)	117, 122
MboI	GATC	2 cut(s)	115, 120
MboII	GAAGA	1 cut(s)	286
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	2 cut(s)	260, 401
MlyI	GAGTC	2 cut(s)	170, 410
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	5 cut(s)	38, 50, 336, 448, 456
MslI	CAYNNNNRTG	1 cut(s)	239
MspI	CCGG	1 cut(s)	385
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	88, 313
NdeII	GATC	2 cut(s)	115, 120
NlaIII	CATG	3 cut(s)	72, 238, 507
NlaIV	GGNNCC	2 cut(s)	38, 252
NspI	RCATGY	2 cut(s)	72, 238
PagI	TCATGA	1 cut(s)	503
PciI	ACATGT	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	328
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	3 cut(s)	84, 475, 478
PleI	GAGTC	2 cut(s)	170, 410
PpsI	GAGTC	2 cut(s)	170, 410
PscI	ACATGT	1 cut(s)	234
PspFI	CCCAGC	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	38, 252
PsyI	GACNNNGTC	1 cut(s)	137
RsaI	GTAC	2 cut(s)	170, 347
RsaNI	GTAC	2 cut(s)	169, 346
RseI	CAYNNNNRTG	1 cut(s)	239
SatI	GCNGC	3 cut(s)	83, 474, 477
Sau3AI	GATC	2 cut(s)	115, 120
SchI	GAGTC	2 cut(s)	170, 410
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	6 cut(s)	141, 156, 218, 313, 347, 440
SmiMI	CAYNNNNRTG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	260, 401
TaaI	ACNGT	4 cut(s)	168, 190, 304, 489
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	157, 419
TasI	AATT	2 cut(s)	260, 401
TfiI	GAWTC	1 cut(s)	328
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	3 cut(s)	82, 473, 476
TspDTI	ATGAA	3 cut(s)	222, 370, 413
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	195
Tth111I	GACNNNGTC	1 cut(s)	137
XagI	CCTNNNNNAGG	1 cut(s)	44
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	2 cut(s)	72, 238
XmiI	GTMKAC	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.