Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001955.1

Orthogroup ID

OG0005311

Physical Location & Seq

Genomic Coordinates Forward (+)

124427 .. 129976

Gene Structure 5550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001955.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atggggttgagaggaggaggaggagcagtggcgggggcattaccgaacctgattcggagcctccgaaaggaagcccaccggaagacccgagcccaacaatcactaccgtctctcaggcgggccttctccctgtacgatcagatcaatctgatcgacaacgttccggatgaccagcttcgatttcaagggtacaccgacacaggtttcaaagtgaatggggtcgactacgaaggcagcttgctttgtattggcaacatgctcatgtcttgggctcccaaaaaattctccgatatcactcctgacagcttatcaatgttccaacttatgcggcctataccagagattttaattcttggctgtgggagatacattgaacccgtagatcctgaagtacgacgcttcattcggtctactggaatgaagttagaagccgttgactcgagaaacgccatatcaacttacaacatactgaatgaggaaggtaggatcgtggctgctgcacttttaccttacggatgcggagtttcgtcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

DUF498

Protein Analysis

177

Amino Acids

19.52

Weight (kDa)

8.84

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44525 AT3G60150 AT3G60150 AT3G60150 AT3G60150
fragaria_vesca	FvH4_1g27010
malus_domestica	MD04G1140000.v1.1 MD07G1082600.v1.1 MD09G1285000.v1.1
prunus_persica	Prupe.2G110500_v2.0.a1 Prupe.2G110500_v2.0.a1 Prupe.3G009000_v2.0.a1
pyrus_communis	pycom07g06600 pycom09g19240
rosa_chinensis	RchiOBHm_Chr3g0487321
rosa_laevigata	RLG00000023015
rosa_multiflora	Rmu_sc0001955.1_g000031 Rmu_sc0033684.1_g000003
rosa_roxburghii	Rroxscaffold_6G00394910 Rroxscaffold_7G00195450
rosa_rugosa	Rorug03G0232800 Rorug03G0232800 Rorug03G0232900
rosa_samantha	Rh3AG280900 Rh3BG316700 Rh3CG314800 Rh3DG312700
rosa_wichuraiana	Rw3G024870 Rw3G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	222, 410
AccIII	TCCGGA	1 cut(s)	163
AciI	CCGC	4 cut(s)	32, 118, 328, 519
AclI	AACGTT	1 cut(s)	159
AclWI	GGATC	2 cut(s)	377, 494
AcsI	RAATTY	1 cut(s)	281
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	3 cut(s)	134, 191, 393
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	185, 208, 374
AluBI	AGCT	3 cut(s)	175, 237, 306
AluI	AGCT	3 cut(s)	175, 237, 306
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	377, 494
Ama87I	CYCGRG	2 cut(s)	87, 439
Aor13HI	TCCGGA	1 cut(s)	163
AoxI	GGCC	2 cut(s)	120, 329
ApeKI	GCWGC	3 cut(s)	234, 494, 497
ApoI	RAATTY	1 cut(s)	281
ArsI	GACNNNNNNTTYG	2 cut(s)	387, 419
AspS9I	GGNCC	1 cut(s)	120
AvaI	CYCGRG	2 cut(s)	87, 439
BanII	GRGCYC	2 cut(s)	94, 274
BbsI	GAAGAC	1 cut(s)	89
BbvI	GCAGC	3 cut(s)	246, 481, 484
BceAI	ACGGC	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	114
BisI	GCNGC	4 cut(s)	235, 329, 495, 498
BlsI	GCNGC	4 cut(s)	236, 330, 496, 499
BmeT110I	CYCGRG	2 cut(s)	87, 439
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	2 cut(s)	59, 273
BmsI	GCATC	1 cut(s)	506
BpiI	GAAGAC	1 cut(s)	89
BsaWI	WCCGGW	2 cut(s)	78, 163
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	418
BseAI	TCCGGA	1 cut(s)	163
BseGI	GGATG	2 cut(s)	172, 521
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	4 cut(s)	27, 30, 33, 36
BseXI	GCAGC	3 cut(s)	246, 481, 484
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	2 cut(s)	122, 331
BsiHKCI	CYCGRG	2 cut(s)	87, 439
BsiSI	CCGG	2 cut(s)	79, 164
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	114
BsmBI	CGTCTC	1 cut(s)	114
BsnI	GGCC	2 cut(s)	122, 331
BsoBI	CYCGRG	2 cut(s)	87, 439
Bsp1286I	GDGCHC	2 cut(s)	94, 274
Bsp13I	TCCGGA	1 cut(s)	163
Bsp143I	GATC	5 cut(s)	136, 141, 150, 382, 486
BspACI	CCGC	4 cut(s)	32, 118, 328, 519
BspANI	GGCC	2 cut(s)	122, 331
BspCNI	CTCAG	1 cut(s)	126
BspEI	TCCGGA	1 cut(s)	163
BspHI	TCATGA	1 cut(s)	530
BspLI	GGNNCC	2 cut(s)	59, 273
BspPI	GGATC	2 cut(s)	377, 494
BsrI	ACTGG	1 cut(s)	418
BssMI	GATC	5 cut(s)	136, 141, 150, 382, 486
Bst4CI	ACNGT	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	120, 239
BstDEI	CTNAG	1 cut(s)	113
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	172, 521
BstKTI	GATC	5 cut(s)	139, 144, 153, 385, 489
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	5 cut(s)	136, 141, 150, 382, 486
BstNSI	RCATGY	1 cut(s)	259
BstV1I	GCAGC	3 cut(s)	246, 481, 484
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	122, 331
BtsCI	GGATG	2 cut(s)	172, 521
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	2 cut(s)	120, 239
CciI	TCATGA	1 cut(s)	530
Cfr13I	GGNCC	1 cut(s)	120
CseI	GACGC	1 cut(s)	405
Csp6I	GTAC	3 cut(s)	133, 190, 392
CviAII	CATG	3 cut(s)	256, 262, 531
CviQI	GTAC	3 cut(s)	133, 190, 392
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	5 cut(s)	138, 143, 152, 384, 488
DpnII	GATC	5 cut(s)	136, 141, 150, 382, 486
Eco24I	GRGCYC	2 cut(s)	94, 274
Eco32I	GATATC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	408
Eco88I	CYCGRG	2 cut(s)	87, 439
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoRV	GATATC	1 cut(s)	292
EcoT38I	GRGCYC	2 cut(s)	94, 274
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	3 cut(s)	259, 265, 534
FaiI	YATR	7 cut(s)	257, 263, 326, 335, 452, 467, 532
FatI	CATG	3 cut(s)	255, 261, 530
FauI	CCCGC	2 cut(s)	25, 111
FblI	GTMKAC	2 cut(s)	222, 410
Fnu4HI	GCNGC	4 cut(s)	235, 329, 495, 498
FokI	GGATG	2 cut(s)	179, 528
FriOI	GRGCYC	2 cut(s)	94, 274
Fsp4HI	GCNGC	4 cut(s)	235, 329, 495, 498
GluI	GCNGC	4 cut(s)	235, 329, 495, 498
HaeIII	GGCC	2 cut(s)	122, 331
HapII	CCGG	2 cut(s)	79, 164
HgaI	GACGC	1 cut(s)	405
Hin1II	CATG	3 cut(s)	259, 265, 534
HincII	GTYRAC	2 cut(s)	223, 436
HindII	GTYRAC	2 cut(s)	223, 436
HinfI	GANTC	2 cut(s)	52, 437
HpaII	CCGG	2 cut(s)	79, 164
Hpy166II	GTNNAC	4 cut(s)	192, 223, 411, 436
Hpy188I	TCNGA	5 cut(s)	57, 65, 141, 150, 289
Hpy188III	TCNNGA	5 cut(s)	164, 299, 386, 441, 531
Hpy8I	GTNNAC	4 cut(s)	192, 223, 411, 436
Hpy99I	CGWCG	1 cut(s)	399
HpyAV	CCTTC	3 cut(s)	133, 224, 473
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	1 cut(s)	500
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	3 cut(s)	259, 265, 534
Kpn2I	TCCGGA	1 cut(s)	163
Kzo9I	GATC	5 cut(s)	136, 141, 150, 382, 486
LmnI	GCTCC	3 cut(s)	23, 57, 277
Lsp1109I	GCAGC	3 cut(s)	246, 481, 484
LweI	GCATC	1 cut(s)	506
MaeII	ACGT	1 cut(s)	159
MalI	GATC	5 cut(s)	138, 143, 152, 384, 488
MboI	GATC	5 cut(s)	136, 141, 150, 382, 486
MboII	GAAGA	1 cut(s)	94
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	2 cut(s)	94, 274
MluCI	AATT	2 cut(s)	281, 348
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	343
MnlI	CCTC	6 cut(s)	5, 8, 11, 14, 71, 469
MroI	TCCGGA	1 cut(s)	163
MseI	TTAA	1 cut(s)	347
MslI	CAYNNNNRTG	1 cut(s)	260
MspI	CCGG	2 cut(s)	79, 164
NdeII	GATC	5 cut(s)	136, 141, 150, 382, 486
NlaIII	CATG	3 cut(s)	259, 265, 534
NlaIV	GGNNCC	2 cut(s)	59, 273
NspI	RCATGY	1 cut(s)	259
PaeR7I	CTCGAG	1 cut(s)	439
PagI	TCATGA	1 cut(s)	530
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	4 cut(s)	236, 330, 496, 499
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
Psp1406I	AACGTT	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	59, 273
PspPI	GGNCC	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	3 cut(s)	134, 191, 393
RsaNI	GTAC	3 cut(s)	133, 190, 392
RseI	CAYNNNNRTG	1 cut(s)	260
SalI	GTCGAC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	4 cut(s)	235, 329, 495, 498
Sau3AI	GATC	5 cut(s)	136, 141, 150, 382, 486
Sau96I	GGNCC	1 cut(s)	120
SchI	GAGTC	1 cut(s)	431
SduI	GDGCHC	2 cut(s)	94, 274
SetI	ASST	8 cut(s)	51, 162, 177, 205, 239, 308, 484, 511
SfaNI	GCATC	1 cut(s)	506
Sfr274I	CTCGAG	1 cut(s)	439
SlaI	CTCGAG	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse9I	AATT	2 cut(s)	281, 348
SsiI	CCGC	4 cut(s)	32, 118, 328, 519
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	4 cut(s)	153, 178, 222, 440
TaqII	GACCGA	1 cut(s)	396
TasI	AATT	2 cut(s)	281, 348
TauI	GCSGC	1 cut(s)	331
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TscAI	CASTG	1 cut(s)	33
TseI	GCWGC	3 cut(s)	234, 494, 497
TspDTI	ATGAA	2 cut(s)	391, 434
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	1 cut(s)	33
XagI	CCTNNNNNAGG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	1 cut(s)	259
XhoI	CTCGAG	1 cut(s)	439
XmiI	GTMKAC	2 cut(s)	222, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.