Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002897

Physical Location & Seq

Genomic Coordinates Reverse (-)

28414317 .. 28419400

Gene Structure 5084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1195500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2706 bp

ATGGAGGTTGAGAAGAAACGTTCAAAAGGGGGATTTCTTAACTTGTTTGACTGGAATGGAAAATCTCGGAAGAAGCTCTTCTCGGCCAGTTCTGAATCATCGGGATTAAAGCATGGGAAAGAATATGTGGAGAGTTTCTCAAAGCCAGGGCTCTATAGGGTAGAGGTGGATGAGAGTGGAACTGCAACTACTTCAAGTAAGCAAGGAAGTAATGACTGGAATTGTGCTTCATCAGTGACCAGTGATGAGGGATGTGGGGTTAGAGCCCCTGGTGTAGTTGCTAGATTAATGGGTCTGGATTCGCTGCCTGCTTCAACTGCCTCGGAGCCATCTTCTGCCCTACTCTTTGACTCCCAGTCGCTTAAAGCATCTCAACATGAGAGGAGTGGTCGTAATTTATGGAGTGATTTTTATGCCACCGAGTACATAAATGTGCCAAAGAAGCTGGATAGGTTTTCTTGGAATCTTGTAGAGCCTAGGACACAGGAGGTACCATGCCACCCAATTGAGAGATTTCAAACAGAAGCTTTGCCTCCAAAATCAGCTAAGTCAATTCCAGTTCCTCAACATAAGCTTTTGTCACCTATCAAGAGTCCTGGCTTCATTCCACCAAAAAATGCGGCTTATGTAATGGAGGCAGCCTCAAAGATCATTGAGGCAAGTCCTCAACCATCTGCCAGGAGCAAAGTGTCACCTGTGGGGCCTTCTTCAATTCCCTTGAGAATTCGGGATTTGAAGGAGAAGATGGAAGCTGTGCGTAAAGCATCAAGACCTGAAGGACCCAAGGAAGCTAGTGACTTGAGGTATATGAAAGGACTGCCGAGTGACAGGCGCCATAACGGGTCAGGTAATGTACCAGTAGCCAAGGCTTCTGTGGATTCAGAAAAACAAAGTTACAGGGATATGAGGAATAAGGGCAAATCACTATCACTTGAAGAACAAGCAAAGGTCAATGTTCAGAGAAGGGAGGGGTCAACTTCTTCTAGTAATAGAAGTTTTATGAACCAGAAGGAACAAAATGAGGTCAAACAAAATCAGTTTTCCAAGAGCAGGTCAGGTACACAAAGACCTATGCATAAGAGAACTTCCGTTGACAACACAAGAACTGCGCTCAAGCAGAATAACCAGAAGCAGAATTGTGTATCGAACAGAGATAAAATGACTTCAAAAGGCATGGTTCCTAATCAGCCTATTAGAAGAATGCGGCCACCTGACGGCTCTAGTGGGCCAAGCAAAACTGTGAATAAGACTATTCTAAGCTCTGAAATTGGTTCCAGAAAGATGGGCTCAAGGGCAACTGCTACTGGAAAAAAGTTTCCATTATCCACAAGAAAGAATGTTTATGGAAAGTTAAGGTCTGTTCATCGGGATGTTCGTTCAGAAGAAACTGTTTCCAATGAAGCATATATTGGGGAGGATGAAAGATCAGTGAAATGTAATGTTTCAAGGAATGGGTGCACCAATTTCGGCTCAGATAATAGGAACCAAGGCATGGATGTTATTTCATTTACATTCACGTCTCCCCTAAAAAGATCATTCTCTGAATTGCAGTCACCTCAAGTCACAAGTATAAATAACTGCTTTTGTATTGATTCTTTTGGTAACAATGATGAGCAGTTCTATCCAGAGAATTTCACATTATCTTCACCTGGGTTGAACGTGATTGGTGGTGATGCTTTGAGTGTCCTTTTGGAACAAAAGCTTCAAGAACTGTCATGTAAAGTTGAGTCATCTCAGCGTAATCAATCCAGTGAAGTGACTTCTGGTAGTTCTATGTCTTGCTTGCAAGATATGATTTCCAGTGTGGCTAGCACTACATCAAGAGGCAAGGGGTTCAAATTTGGTTTAACCAAAGATAAAACTCACAGCACATACGACAATGGTTGCTTGTCGGTTGAGGTTAACCAGCAGTGGCAGGGATCAGAAGGGGTGGAAGAGTGTAGCAGTAGCATCAGAAACAGTGCAACTGGAAAAGAATTTGATCGACGTCTTAGTCCAGTTTCAGTTTTTGAGCACTCATTTGAGAGTCGAACCTGCACAGATAACAGAAGTAGCACCAATGGCAGTGACAGTGAGAGATGTTCGTTGGCTCATGTTCAAGATCAAGGTAGTTCATTCTCTTCATATGGTGTTTCAGAGTTCCTCGACTCAGCCTCTTCAGCTTCCACAGGGGATGCCAGCGGAAAGAGTACGACTGTAATCTCAGGTTCCTATTATTTTAATCAAACAAACGATTGGGAACTGGAATATGTAAGATACATCCTAAGCAATGTAGATTTAGAGATGGAAGATTTCGCTTTGGGTGATGCTCAACACGTCATCACCCCCAGTCTCTTTGACCATTTGGAGAATCAAGAACAAGAAGAGTATCTGAAGCTCGAGCAGAAGATCATGTTTGACTGCGTAAACGAAACCCTGCAGTTCAGATGCAAGCAAATTTTTGTGGGAAGCGGCAAAGCGTGGGATAGATTGACCACATTGTCTCAGAGGAAGGGACGGCTAGCTGAGGAGTTGTACAAAGAGATTTCGGGTTGTAAAAGCATGGTAGAACTGATGGGGGATGAGCTTGTGGACAAGGACATGAGCACTCAGCGTGGGAGATGGCTTGACTTTGAAGTCGAAGCATTGGAAGAGGGTTTGGAGATTGAGAAGGGGATACTGAATTGTCTGGTGGATGAATTGGTGTCTGATTTTTTGAACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

902

Amino Acids

99.98

Weight (kDa)

8.12

Isoelectric Point (pI)

55.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VARLMGL	PF14383	77 - 106	1.6e-15	DUF761-associated sequence motif
DUF4378	PF14309	747 - 893	8.9e-31	Domain of unknown function (DUF4378)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05740 AT3G05740
fragaria_vesca	FvH4_6g07200 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210
malus_domestica	MD04G1195500.v1.1 MD12G1207600.v1.1 MD12G1207700.v1.1 MD12G1207800.v1.1
prunus_persica	Prupe.6G315200_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1
pyrus_communis	pycom04g17270 pycom12g19520 pycom12g19530
rosa_chinensis	RchiOBHm_Chr3g0456831 RchiOBHm_Chr3g0456841
rosa_laevigata	RLG00000025275
rosa_multiflora	Rmu_co8434835.1_g000001 Rmu_sc0000133.1_g000020
rosa_roxburghii	Rroxscaffold_6G00422450 Rroxscaffold_6G00422460
rosa_rugosa	Rorug03G0016100 Rorug03G0016200 Rorug03G0016300.1
rosa_samantha	Rh3AG076400 Rh3AG076600 Rh3BG078200 Rh3BG078400 Rh3CG078000 Rh3CG078200 Rh3DG080100 Rh3DG080200
rosa_wichuraiana	Rw3G006560 Rw3G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	1992, 2479, 2615
AatII	GACGTC	1 cut(s)	1990
Acc36I	ACCTGC	2 cut(s)	1041, 2042
Acc65I	GGTACC	1 cut(s)	490
AccB1I	GGYRCC	2 cut(s)	490, 831
AccB7I	CCANNNNNTGG	1 cut(s)	1492
AciI	CCGC	4 cut(s)	620, 1204, 2181, 2451
AclI	AACGTT	1 cut(s)	19
AclWI	GGATC	1 cut(s)	1927
AcoI	YGGCCR	2 cut(s)	84, 1205
AcsI	RAATTY	5 cut(s)	723, 1630, 1838, 1976, 2436
AcuI	CTGAAG	3 cut(s)	795, 2142, 2393
AcyI	GRCGYC	2 cut(s)	832, 1987
AfaI	GTAC	6 cut(s)	425, 492, 855, 1060, 2191, 2516
AfiI	CCNNNNNNNGG	3 cut(s)	1050, 1214, 1492
AflIII	ACRYGT	1 cut(s)	2314
AhdI	GACNNNNNGTC	1 cut(s)	355
AjiI	CACGTC	2 cut(s)	1518, 2317
AjnI	CCWGG	5 cut(s)	145, 268, 595, 677, 1648
AjuI	GAANNNNNNNTTGG	2 cut(s)	1392, 1424
Alw21I	GWGCWC	3 cut(s)	1460, 2016, 2588
Alw26I	GTCTC	3 cut(s)	1524, 2336, 2487
Alw44I	GTGCAC	1 cut(s)	1456
AlwI	GGATC	1 cut(s)	1927
Ama87I	CYCGRG	1 cut(s)	2378
AoxI	GGCC	4 cut(s)	84, 701, 1205, 1226
ApaLI	GTGCAC	1 cut(s)	1456
ApeKI	GCWGC	2 cut(s)	304, 638
ApoI	RAATTY	5 cut(s)	723, 1630, 1838, 1976, 2436
AseI	ATTAAT	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	77
Asp718I	GGTACC	1 cut(s)	490
AspA2I	CCTAGG	1 cut(s)	476
AspLEI	GCGC	2 cut(s)	834, 1111
AspS9I	GGNCC	3 cut(s)	701, 779, 1226
AsuHPI	GGTGA	7 cut(s)	573, 684, 1545, 1638, 1682, 2314, 2315
AsuNHI	GCTAGC	2 cut(s)	1808, 2500
AvaI	CYCGRG	1 cut(s)	2378
AvaII	GGWCC	1 cut(s)	779
AvrII	CCTAGG	1 cut(s)	476
BaeGI	GKGCMC	1 cut(s)	1460
BanI	GGYRCC	2 cut(s)	490, 831
BanII	GRGCYC	3 cut(s)	153, 268, 1289
Bbv12I	GWGCWC	3 cut(s)	1460, 2016, 2588
BbvCI	CCTCAGC	1 cut(s)	2505
BbvI	GCAGC	2 cut(s)	291, 650
BccI	CCATC	7 cut(s)	337, 679, 739, 1276, 2278, 2548, 2595
BceAI	ACGGC	2 cut(s)	1231, 2513
BcgI	CGANNNNNNTGC	2 cut(s)	1447, 1481
BciT130I	CCWGG	5 cut(s)	147, 270, 597, 679, 1650
BciVI	GTATCC	1 cut(s)	2649
BcoDI	GTCTC	3 cut(s)	1524, 2336, 2487
BfaI	CTAG	8 cut(s)	282, 477, 792, 984, 1221, 1809, 2501, 2704
BfmI	CTRYAG	2 cut(s)	154, 2417
BfoI	RGCGCY	1 cut(s)	835
BfuAI	ACCTGC	2 cut(s)	1041, 2042
BfuI	GTATCC	1 cut(s)	2649
BisI	GCNGC	5 cut(s)	305, 621, 639, 1205, 2452
BlnI	CCTAGG	1 cut(s)	476
BlsI	GCNGC	5 cut(s)	306, 622, 640, 1206, 2453
Bme1390I	CCNGG	5 cut(s)	147, 270, 597, 679, 1650
Bme18I	GGWCC	1 cut(s)	779
BmeRI	GACNNNNNGTC	1 cut(s)	355
BmeT110I	CYCGRG	1 cut(s)	2378
BmgBI	CACGTC	2 cut(s)	1518, 2317
BmgT120I	GGNCC	3 cut(s)	701, 779, 1226
BmiI	GGNNCC	9 cut(s)	327, 492, 702, 781, 833, 1179, 1273, 1484, 2209
BmrFI	CCNGG	5 cut(s)	147, 270, 597, 679, 1650
BmrI	ACTGGG	2 cut(s)	349, 2322
BmsI	GCATC	7 cut(s)	377, 773, 1663, 1959, 2164, 2296, 2417
BmtI	GCTAGC	2 cut(s)	1812, 2504
BmuI	ACTGGG	2 cut(s)	349, 2322
BplI	GAGNNNNNCTC	4 cut(s)	122, 154, 626, 658
Bpu10I	CCTNAGC	2 cut(s)	2264, 2505
BpuEI	CTTGAG	5 cut(s)	739, 820, 1097, 1273, 1542
BsaHI	GRCGYC	2 cut(s)	832, 1987
BsaJI	CCNNGG	8 cut(s)	146, 268, 321, 476, 783, 864, 1486, 1649
BsaXI	ACNNNNNCTCC	2 cut(s)	376, 406
Bsc4I	CCNNNNNNNGG	3 cut(s)	1050, 1214, 1492
Bse3DI	GCAATG	1 cut(s)	2275
BseBI	CCWGG	5 cut(s)	147, 270, 597, 679, 1650
BseDI	CCNNGG	8 cut(s)	146, 268, 321, 476, 783, 864, 1486, 1649
BseGI	GGATG	9 cut(s)	175, 257, 1375, 1423, 1501, 2179, 2259, 2566, 2680
BseLI	CCNNNNNNNGG	3 cut(s)	1050, 1214, 1492
BseMI	GCAATG	1 cut(s)	2275
BseMII	CTCAG	7 cut(s)	1485, 1748, 2163, 2217, 2496, 2498, 2603
BseRI	GAGGAG	2 cut(s)	397, 2522
BseSI	GKGCMC	1 cut(s)	1460
BseXI	GCAGC	2 cut(s)	291, 650
BsgI	GTGCAG	1 cut(s)	2020
BshFI	GGCC	4 cut(s)	86, 703, 1207, 1228
BshNI	GGYRCC	2 cut(s)	490, 831
BsiHKAI	GWGCWC	3 cut(s)	1460, 2016, 2588
BsiHKCI	CYCGRG	1 cut(s)	2378
BslFI	GGGAC	1 cut(s)	2508
BslI	CCNNNNNNNGG	3 cut(s)	1050, 1214, 1492
BsmAI	GTCTC	3 cut(s)	1524, 2336, 2487
BsmBI	CGTCTC	1 cut(s)	1524
BsmFI	GGGAC	1 cut(s)	2508
BsmI	GAATGC	1 cut(s)	1206
BsnI	GGCC	4 cut(s)	86, 703, 1207, 1228
BsoBI	CYCGRG	1 cut(s)	2378
Bsp1286I	GDGCHC	6 cut(s)	153, 268, 1289, 1460, 2016, 2588
Bsp1407I	TGTACA	1 cut(s)	2514
Bsp143I	GATC	7 cut(s)	648, 1424, 1532, 1919, 1981, 2101, 2388
BspACI	CCGC	4 cut(s)	620, 1204, 2181, 2451
BspANI	GGCC	4 cut(s)	86, 703, 1207, 1228
BspCNI	CTCAG	7 cut(s)	1484, 1747, 2162, 2216, 2497, 2497, 2602
BspLI	GGNNCC	9 cut(s)	327, 492, 702, 781, 833, 1179, 1273, 1484, 2209
BspMAI	CTGCAG	1 cut(s)	2421
BspMI	ACCTGC	2 cut(s)	1041, 2042
BspOI	GCTAGC	2 cut(s)	1812, 2504
BspPI	GGATC	1 cut(s)	1927
BspQI	GCTCTTC	1 cut(s)	83
BspT107I	GGYRCC	2 cut(s)	490, 831
BsrDI	GCAATG	1 cut(s)	2275
BsrGI	TGTACA	1 cut(s)	2514
BssECI	CCNNGG	8 cut(s)	146, 268, 321, 476, 783, 864, 1486, 1649
BssMI	GATC	7 cut(s)	648, 1424, 1532, 1919, 1981, 2101, 2388
BssNI	GRCGYC	2 cut(s)	832, 1987
BssT1I	CCWWGG	4 cut(s)	476, 783, 864, 1486
Bst2UI	CCWGG	5 cut(s)	147, 270, 597, 679, 1650
Bst4CI	ACNGT	6 cut(s)	1240, 1390, 1713, 1961, 2072, 2197
Bst6I	CTCTTC	6 cut(s)	83, 1929, 2125, 2161, 2358, 2625
BstACI	GRCGYC	2 cut(s)	832, 1987
BstAUI	TGTACA	1 cut(s)	2514
BstC8I	GCNNGC	6 cut(s)	309, 1784, 1810, 2179, 2432, 2502
BstF5I	GGATG	9 cut(s)	175, 257, 1375, 1423, 1501, 2179, 2259, 2566, 2680
BstH2I	RGCGCY	1 cut(s)	835
BstHHI	GCGC	2 cut(s)	834, 1111
BstKTI	GATC	7 cut(s)	651, 1427, 1535, 1922, 1984, 2104, 2391
BstMAI	GTCTC	3 cut(s)	1524, 2336, 2487
BstMBI	GATC	7 cut(s)	648, 1424, 1532, 1919, 1981, 2101, 2388
BstMWI	GCNNNNNNNGC	4 cut(s)	317, 442, 2061, 2159
BstNI	CCWGG	5 cut(s)	147, 270, 597, 679, 1650
BstSCI	CCNGG	5 cut(s)	145, 268, 595, 677, 1648
BstSFI	CTRYAG	2 cut(s)	154, 2417
BstSLI	GKGCMC	1 cut(s)	1460
BstV1I	GCAGC	2 cut(s)	291, 650
BstXI	CCANNNNNNTGG	1 cut(s)	1282
BsuI	GTATCC	1 cut(s)	2649
BsuRI	GGCC	4 cut(s)	86, 703, 1207, 1228
BtrI	CACGTC	2 cut(s)	1518, 2317
BtsCI	GGATG	9 cut(s)	175, 257, 1375, 1423, 1501, 2179, 2259, 2566, 2680
BtsI	GCAGTG	2 cut(s)	1916, 2071
BtsIMutI	CAGTG	9 cut(s)	240, 247, 1434, 1756, 1807, 1916, 1966, 2071, 2077
BveI	ACCTGC	2 cut(s)	1041, 2042
Cac8I	GCNNGC	6 cut(s)	309, 1784, 1810, 2179, 2432, 2502
CfoI	GCGC	2 cut(s)	834, 1111
Cfr13I	GGNCC	3 cut(s)	701, 779, 1226
Csp6I	GTAC	6 cut(s)	424, 491, 854, 1059, 2190, 2515
CviQI	GTAC	6 cut(s)	424, 491, 854, 1059, 2190, 2515
DinI	GGCGCC	1 cut(s)	833
DpnI	GATC	7 cut(s)	650, 1426, 1534, 1921, 1983, 2103, 2390
DpnII	GATC	7 cut(s)	648, 1424, 1532, 1919, 1981, 2101, 2388
DrdI	GACNNNNNNGTC	3 cut(s)	1992, 2479, 2615
DriI	GACNNNNNGTC	1 cut(s)	355
DseDI	GACNNNNNNGTC	3 cut(s)	1992, 2479, 2615
EaeI	YGGCCR	2 cut(s)	84, 1205
Eam1104I	CTCTTC	6 cut(s)	83, 1929, 2125, 2161, 2358, 2625
Eam1105I	GACNNNNNGTC	1 cut(s)	355
EarI	CTCTTC	6 cut(s)	83, 1929, 2125, 2161, 2358, 2625
Eco130I	CCWWGG	4 cut(s)	476, 783, 864, 1486
Eco24I	GRGCYC	3 cut(s)	153, 268, 1289
Eco47I	GGWCC	1 cut(s)	779
Eco57I	CTGAAG	3 cut(s)	795, 2142, 2393
Eco88I	CYCGRG	1 cut(s)	2378
EcoO109I	RGGNCCY	2 cut(s)	701, 779
EcoRI	GAATTC	1 cut(s)	723
EcoRII	CCWGG	5 cut(s)	145, 268, 595, 677, 1648
EcoT14I	CCWWGG	4 cut(s)	476, 783, 864, 1486
EcoT22I	ATGCAT	1 cut(s)	1077
EcoT38I	GRGCYC	3 cut(s)	153, 268, 1289
EgeI	GGCGCC	1 cut(s)	833
EheI	GGCGCC	1 cut(s)	833
ErhI	CCWWGG	4 cut(s)	476, 783, 864, 1486
Esp3I	CGTCTC	1 cut(s)	1524
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	2508
FauNDI	CATATG	1 cut(s)	2125
Fnu4HI	GCNGC	5 cut(s)	305, 621, 639, 1205, 2452
FokI	GGATG	9 cut(s)	182, 264, 1382, 1430, 1508, 2186, 2246, 2573, 2687
FriOI	GRGCYC	3 cut(s)	153, 268, 1289
Fsp4HI	GCNGC	5 cut(s)	305, 621, 639, 1205, 2452
FspBI	CTAG	8 cut(s)	282, 477, 792, 984, 1221, 1809, 2501, 2704
GlaI	GCGC	2 cut(s)	833, 1110
GluI	GCNGC	5 cut(s)	305, 621, 639, 1205, 2452
HaeII	RGCGCY	1 cut(s)	835
HaeIII	GGCC	4 cut(s)	86, 703, 1207, 1228
HhaI	GCGC	2 cut(s)	834, 1111
Hin1I	GRCGYC	2 cut(s)	832, 1987
Hin6I	GCGC	2 cut(s)	832, 1109
HinP1I	GCGC	2 cut(s)	832, 1109
HincII	GTYRAC	3 cut(s)	975, 1093, 1903
HindII	GTYRAC	3 cut(s)	975, 1093, 1903
HindIII	AAGCTT	3 cut(s)	525, 572, 1700
HpaI	GTTAAC	1 cut(s)	1903
HphI	GGTGA	7 cut(s)	573, 684, 1545, 1638, 1682, 2314, 2315
Hpy166II	GTNNAC	7 cut(s)	975, 1061, 1093, 1458, 1903, 2407, 2572
Hpy8I	GTNNAC	7 cut(s)	975, 1061, 1093, 1458, 1903, 2407, 2572
Hpy99I	CGWCG	1 cut(s)	1989
HpyAV	CCTTC	8 cut(s)	714, 730, 770, 957, 1003, 1919, 2485, 2644
HpyCH4III	ACNGT	6 cut(s)	1240, 1390, 1713, 1961, 2072, 2197
HpyCH4IV	ACGT	5 cut(s)	19, 1517, 1659, 1987, 2316
HpyCH4V	TGCA	9 cut(s)	185, 1075, 1458, 1549, 1786, 1964, 2037, 2419, 2430
HpyF10VI	GCNNNNNNNGC	4 cut(s)	317, 442, 2061, 2159
HpySE526I	ACGT	5 cut(s)	19, 1517, 1659, 1987, 2316
Hsp92I	GRCGYC	2 cut(s)	832, 1987
HspAI	GCGC	2 cut(s)	832, 1109
KasI	GGCGCC	1 cut(s)	831
KpnI	GGTACC	1 cut(s)	494
KspAI	GTTAAC	1 cut(s)	1903
Kzo9I	GATC	7 cut(s)	648, 1424, 1532, 1919, 1981, 2101, 2388
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	2 cut(s)	325, 681
Lsp1109I	GCAGC	2 cut(s)	291, 650
LweI	GCATC	7 cut(s)	377, 773, 1663, 1959, 2164, 2296, 2417
MaeI	CTAG	8 cut(s)	282, 477, 792, 984, 1221, 1809, 2501, 2704
MaeII	ACGT	5 cut(s)	19, 1517, 1659, 1987, 2316
MalI	GATC	7 cut(s)	650, 1426, 1534, 1921, 1983, 2103, 2390
MboI	GATC	7 cut(s)	648, 1424, 1532, 1919, 1981, 2101, 2388
MfeI	CAATTG	1 cut(s)	504
MhlI	GDGCHC	6 cut(s)	153, 268, 1289, 1460, 2016, 2588
Mly113I	GGCGCC	1 cut(s)	832
MlyI	GAGTC	5 cut(s)	344, 601, 1736, 2035, 2141
Mph1103I	ATGCAT	1 cut(s)	1077
MroXI	GAANNNNTTC	1 cut(s)	77
MseI	TTAA	8 cut(s)	39, 107, 287, 363, 1352, 1847, 1902, 2220
MslI	CAYNNNNRTG	2 cut(s)	431, 1368
MspA1I	CMGCKG	1 cut(s)	2181
MspR9I	CCNGG	5 cut(s)	147, 270, 597, 679, 1650
MunI	CAATTG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	1206
MvaI	CCWGG	5 cut(s)	147, 270, 597, 679, 1650
MwoI	GCNNNNNNNGC	4 cut(s)	317, 442, 2061, 2159
NarI	GGCGCC	1 cut(s)	832
NdeI	CATATG	1 cut(s)	2125
NdeII	GATC	7 cut(s)	648, 1424, 1532, 1919, 1981, 2101, 2388
NheI	GCTAGC	2 cut(s)	1808, 2500
NlaIV	GGNNCC	9 cut(s)	327, 492, 702, 781, 833, 1179, 1273, 1484, 2209
NmeAIII	GCCGAG	2 cut(s)	62, 846
NmuCI	GTSAC	9 cut(s)	235, 579, 690, 794, 824, 1551, 1561, 1756, 2066
NsiI	ATGCAT	1 cut(s)	1077
PaeR7I	CTCGAG	1 cut(s)	2378
PciSI	GCTCTTC	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	1372
PctI	GAATGC	1 cut(s)	1206
PdmI	GAANNNNTTC	1 cut(s)	77
PfeI	GAWTC	6 cut(s)	95, 299, 463, 878, 1592, 2350
PflMI	CCANNNNNTGG	1 cut(s)	1492
PkrI	GCNGC	5 cut(s)	306, 622, 640, 1206, 2453
PleI	GAGTC	5 cut(s)	344, 600, 1735, 2034, 2141
PluTI	GGCGCC	1 cut(s)	835
PpsI	GAGTC	5 cut(s)	344, 600, 1735, 2034, 2141
PpuMI	RGGWCCY	1 cut(s)	779
PshBI	ATTAAT	1 cut(s)	287
Psp1406I	AACGTT	1 cut(s)	19
Psp5II	RGGWCCY	1 cut(s)	779
Psp6I	CCWGG	5 cut(s)	145, 268, 595, 677, 1648
PspGI	CCWGG	5 cut(s)	145, 268, 595, 677, 1648
PspN4I	GGNNCC	9 cut(s)	327, 492, 702, 781, 833, 1179, 1273, 1484, 2209
PspPI	GGNCC	3 cut(s)	701, 779, 1226
PspPPI	RGGWCCY	1 cut(s)	779
PspXI	VCTCGAGB	1 cut(s)	2378
PsrI	GAACNNNNNNTAC	2 cut(s)	172, 204
PstI	CTGCAG	1 cut(s)	2421
RsaI	GTAC	6 cut(s)	425, 492, 855, 1060, 2191, 2516
RsaNI	GTAC	6 cut(s)	424, 491, 854, 1059, 2190, 2515
RseI	CAYNNNNRTG	2 cut(s)	431, 1368
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	8 cut(s)	39, 107, 287, 363, 1352, 1847, 1902, 2220
SatI	GCNGC	5 cut(s)	305, 621, 639, 1205, 2452
Sau3AI	GATC	7 cut(s)	648, 1424, 1532, 1919, 1981, 2101, 2388
Sau96I	GGNCC	3 cut(s)	701, 779, 1226
SchI	GAGTC	5 cut(s)	344, 601, 1736, 2035, 2141
ScrFI	CCNGG	5 cut(s)	147, 270, 597, 679, 1650
SduI	GDGCHC	6 cut(s)	153, 268, 1289, 1460, 2016, 2588
SfaNI	GCATC	7 cut(s)	377, 773, 1663, 1959, 2164, 2296, 2417
SfcI	CTRYAG	2 cut(s)	154, 2417
SfoI	GGCGCC	1 cut(s)	833
Sfr274I	CTCGAG	1 cut(s)	2378
SinI	GGWCC	1 cut(s)	779
SlaI	CTCGAG	1 cut(s)	2378
SmiMI	CAYNNNNRTG	2 cut(s)	431, 1368
SmlI	CTYRAG	6 cut(s)	718, 799, 1112, 1288, 1557, 2378
SmoI	CTYRAG	6 cut(s)	718, 799, 1112, 1288, 1557, 2378
SsiI	CCGC	4 cut(s)	620, 1204, 2181, 2451
SspDI	GGCGCC	1 cut(s)	831
SspMI	CTAG	8 cut(s)	282, 477, 792, 984, 1221, 1809, 2501, 2704
StyD4I	CCNGG	5 cut(s)	145, 268, 595, 677, 1648
StyI	CCWWGG	4 cut(s)	476, 783, 864, 1486
TaaI	ACNGT	6 cut(s)	1240, 1390, 1713, 1961, 2072, 2197
TaiI	ACGT	5 cut(s)	22, 1520, 1662, 1990, 2319
TaqI	TCGA	6 cut(s)	1145, 1984, 2029, 2145, 2379, 2619
TatI	WGTACW	2 cut(s)	423, 2514
TauI	GCSGC	3 cut(s)	623, 1207, 2454
TfiI	GAWTC	6 cut(s)	95, 299, 463, 878, 1592, 2350
Tru1I	TTAA	8 cut(s)	39, 107, 287, 363, 1352, 1847, 1902, 2220
Tru9I	TTAA	8 cut(s)	39, 107, 287, 363, 1352, 1847, 1902, 2220
TscAI	CASTG	9 cut(s)	240, 247, 1434, 1756, 1807, 1916, 1966, 2071, 2077
TseFI	GTSAC	9 cut(s)	235, 579, 690, 794, 824, 1551, 1561, 1756, 2066
TseI	GCWGC	2 cut(s)	304, 638
Tsp45I	GTSAC	9 cut(s)	235, 579, 690, 794, 824, 1551, 1561, 1756, 2066
TspGWI	ACGGA	1 cut(s)	1078
TspRI	CASTG	9 cut(s)	240, 247, 1434, 1756, 1807, 1916, 1966, 2071, 2077
Van91I	CCANNNNNTGG	1 cut(s)	1492
VneI	GTGCAC	1 cut(s)	1456
VpaK11BI	GGWCC	1 cut(s)	779
VspI	ATTAAT	1 cut(s)	287
XapI	RAATTY	5 cut(s)	723, 1630, 1838, 1976, 2436
XcmI	CCANNNNNNNNNTGG	1 cut(s)	871
XhoI	CTCGAG	1 cut(s)	2378
XmaJI	CCTAGG	1 cut(s)	476
XmnI	GAANNNNTTC	1 cut(s)	77
XspI	CTAG	8 cut(s)	282, 477, 792, 984, 1221, 1809, 2501, 2704
ZraI	GACGTC	1 cut(s)	1988
Zsp2I	ATGCAT	1 cut(s)	1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.