Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002897

Physical Location & Seq

Genomic Coordinates Reverse (-)

28752441 .. 28753233

Gene Structure 793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1207800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGTAGTCGAAGCAGATAATGATGGAGACAATATCAACATGGTAGAAGATTCACCCGAACGTGAAGAATACCCGAATTTTATGGTGTTGGATTCTAGTGATAGTGAAGAATTTGAGTTTATAACTCCAATGAGAAAAAAAGTTGGATCAAATCCCTCGTCGGTGGATTGCAAAAGCACCATTAGTCAAGATTCAGTTCCAACAATTTCTAGTAAGAAGCAGTGCACCCGAATGTCAAAAGATGAAGTGAAAACTCTCAGTTATGAAGAATTACAGGCTTTGGATGATGCTGAGCTGGCCAATGTTGTAATATTTGGTAATAGGGTATTTCGACCCTTGCAGCATCAAGCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031668 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042221 GO:0042623 GO:0042631 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

119

Amino Acids

13.28

Weight (kDa)

4.39

Isoelectric Point (pI)

60.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05740 AT3G05740
fragaria_vesca	FvH4_6g07200 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210
malus_domestica	MD04G1195500.v1.1 MD12G1207600.v1.1 MD12G1207700.v1.1 MD12G1207800.v1.1
prunus_persica	Prupe.6G315200_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1
pyrus_communis	pycom04g17270 pycom12g19520 pycom12g19530
rosa_chinensis	RchiOBHm_Chr3g0456831 RchiOBHm_Chr3g0456841
rosa_laevigata	RLG00000025275
rosa_multiflora	Rmu_co8434835.1_g000001 Rmu_sc0000133.1_g000020
rosa_roxburghii	Rroxscaffold_6G00422450 Rroxscaffold_6G00422460
rosa_rugosa	Rorug03G0016100 Rorug03G0016200 Rorug03G0016300.1
rosa_samantha	Rh3AG076400 Rh3AG076600 Rh3BG078200 Rh3BG078400 Rh3CG078000 Rh3CG078200 Rh3DG080100 Rh3DG080200
rosa_wichuraiana	Rw3G006560 Rw3G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	122
AclWI	GGATC	1 cut(s)	154
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	76, 110
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	1 cut(s)	21
Alw44I	GTGCAC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	154
AoxI	GGCC	1 cut(s)	297
ApaLI	GTGCAC	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	340
ApoI	RAATTY	2 cut(s)	76, 110
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AsuHPI	GGTGA	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	2 cut(s)	96, 210
BisI	GCNGC	1 cut(s)	341
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	342
BmsI	GCATC	2 cut(s)	277, 352
Bpu1102I	GCTNAGC	1 cut(s)	291
BseGI	GGATG	1 cut(s)	289
BseMII	CTCAG	2 cut(s)	271, 282
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	352
BshFI	GGCC	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	146
Bsp1720I	GCTNAGC	1 cut(s)	291
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	2 cut(s)	270, 283
BspPI	GGATC	1 cut(s)	154
BssMI	GATC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	2 cut(s)	257, 291
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	1 cut(s)	149
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	354
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	227
Cac8I	GCNNGC	1 cut(s)	297
CviAII	CATG	2 cut(s)	40, 351
CviJI	RGCY	3 cut(s)	278, 295, 299
CviKI_1	RGCY	3 cut(s)	278, 295, 299
DdeI	CTNAG	2 cut(s)	257, 291
DpnI	GATC	1 cut(s)	148
DpnII	GATC	1 cut(s)	146
EaeI	YGGCCR	1 cut(s)	297
FaeI	CATG	2 cut(s)	43, 354
FaiI	YATR	5 cut(s)	41, 83, 122, 264, 352
FatI	CATG	2 cut(s)	39, 350
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	341
FspBI	CTAG	2 cut(s)	96, 210
GluI	GCNGC	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	299
Hin1II	CATG	2 cut(s)	43, 354
HinfI	GANTC	3 cut(s)	50, 92, 191
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	3 cut(s)	171, 225, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	2 cut(s)	257, 291
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	2 cut(s)	43, 354
Kzo9I	GATC	1 cut(s)	146
LpnPI	CCDG	2 cut(s)	260, 281
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	2 cut(s)	277, 352
MaeI	CTAG	2 cut(s)	96, 210
MaeII	ACGT	1 cut(s)	61
MalI	GATC	1 cut(s)	148
MboI	GATC	1 cut(s)	146
MboII	GAAGA	4 cut(s)	59, 77, 119, 278
MhlI	GDGCHC	1 cut(s)	227
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	4 cut(s)	76, 110, 204, 269
MluNI	TGGCCA	1 cut(s)	299
MmeI	TCCRAC	3 cut(s)	69, 124, 224
MnlI	CCTC	1 cut(s)	166
Mox20I	TGGCCA	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	1 cut(s)	355
MslI	CAYNNNNRTG	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	299
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeII	GATC	1 cut(s)	146
NlaIII	CATG	2 cut(s)	43, 354
NspI	RCATGY	1 cut(s)	354
PfeI	GAWTC	3 cut(s)	50, 92, 191
PkrI	GCNGC	1 cut(s)	342
PsiI	TTATAA	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	355
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	2 cut(s)	64, 297
SfaNI	GCATC	2 cut(s)	277, 352
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	4 cut(s)	76, 110, 204, 269
SspI	AATATT	1 cut(s)	312
SspMI	CTAG	2 cut(s)	96, 210
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	2 cut(s)	9, 331
TasI	AATT	4 cut(s)	76, 110, 204, 269
TfiI	GAWTC	3 cut(s)	50, 92, 191
Tru1I	TTAA	1 cut(s)	355
Tru9I	TTAA	1 cut(s)	355
TscAI	CASTG	1 cut(s)	227
TseI	GCWGC	1 cut(s)	340
TspDTI	ATGAA	2 cut(s)	258, 279
TspRI	CASTG	1 cut(s)	227
VneI	GTGCAC	1 cut(s)	223
XapI	RAATTY	2 cut(s)	76, 110
XceI	RCATGY	1 cut(s)	354
XspI	CTAG	2 cut(s)	96, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.