Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002897

Physical Location & Seq

Genomic Coordinates Reverse (-)

43341941 .. 43347063

Gene Structure 5123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00422450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGATGTTGTTTCATTTACATTCACGTCTCCCCTGAAAAAATCCATTTCTGAATTGCAGTCCACTGGCCAAGTTGTGAGTATGAATAACAGATTTTGTACTGATTCTTTTGGTAATAATGATCAGCACAGCAACCCATGGCATTTTACATTTTCTTCACCTGGGTTGAATGTGATTGGTGGTGATGCTTTGAGTGTTCTTTTGGAACAAAAGCTTCAAGAATTGACATGCAAAGTTGAGTCATCTCAGCATAACCTGTTTGGTGAAGGGACTTCCGCTAGTTCTTCGTCTAGCTTGCAAGATTTGGTTTCCAGTGAGGCAAGCACCACATCAAGAGGCAAGAAGTTCGAACTTGGTTTGCTCAGAGATAAAGTTGATGACATAGCGAACTTTGATTTTCCGTCACCTGATGTAAACCGAAAGTGGCAGAGCGAAGATGTTAGAGATGAAGTTAGCTTTAGTATTAGTAATCTTCATTTGATCAACACGTTATTGCTGAAGGATATACTATTTCAATTAGTTGCAATAAATTTGAACATGCCTTTCATCAAAAGAGCCGAGTTATCATGTTTGCATCATGAAGATGCTAATCAAGTTCTGTTGAACAATTTCAGGGACCAGAAGGGATGGAAGAGTGTAGCAGTAGCAGCAAAAACAGTGGAACTGGAAAGGATTTTGATTATCATCTTAACCCAGTTTCAGTTTTTGAACCCTCATTTGAGATTGGAAGCTGCACAGATAACAGAAGCAGTGCCAATGGATGTGAGAGTGAGAGGAGGTGTTCATTTGCTCAAGCTCAAGATCAAATCTATTTATTCTCCACATTTGAAATCCAACCATGTGGTGCTTCCGAGTTATCTGACTCGGCCTCCACTTGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

294

Amino Acids

32.87

Weight (kDa)

6.8

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05740 AT3G05740
fragaria_vesca	FvH4_6g07200 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210
malus_domestica	MD04G1195500.v1.1 MD12G1207600.v1.1 MD12G1207700.v1.1 MD12G1207800.v1.1
prunus_persica	Prupe.6G315200_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1
pyrus_communis	pycom04g17270 pycom12g19520 pycom12g19530
rosa_chinensis	RchiOBHm_Chr3g0456831 RchiOBHm_Chr3g0456841
rosa_laevigata	RLG00000025275
rosa_multiflora	Rmu_co8434835.1_g000001 Rmu_sc0000133.1_g000020
rosa_roxburghii	Rroxscaffold_6G00422450 Rroxscaffold_6G00422460
rosa_rugosa	Rorug03G0016100 Rorug03G0016200 Rorug03G0016300.1
rosa_samantha	Rh3AG076400 Rh3AG076600 Rh3BG078200 Rh3BG078400 Rh3CG078000 Rh3CG078200 Rh3DG080100 Rh3DG080200
rosa_wichuraiana	Rw3G006560 Rw3G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	276
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	529
AcuI	CTGAAG	1 cut(s)	518
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	875
AflIII	ACRYGT	1 cut(s)	486
AgsI	TTSAA	7 cut(s)	169, 218, 515, 535, 604, 709, 829
AjiI	CACGTC	1 cut(s)	27
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	5 cut(s)	214, 294, 456, 731, 796
AluI	AGCT	5 cut(s)	214, 294, 456, 731, 796
Alw26I	GTCTC	1 cut(s)	33
AoxI	GGCC	2 cut(s)	67, 866
ApeKI	GCWGC	2 cut(s)	647, 731
ApoI	RAATTY	1 cut(s)	529
Asp700I	GAANNNNTTC	1 cut(s)	608
AspS9I	GGNCC	1 cut(s)	616
AsuHPI	GGTGA	4 cut(s)	150, 194, 275, 396
AsuII	TTCGAA	1 cut(s)	348
AvaII	GGWCC	1 cut(s)	616
BalI	TGGCCA	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	659, 718
BccI	CCATC	1 cut(s)	621
BcgI	CGANNNNNNTGC	2 cut(s)	328, 362
BciT130I	CCWGG	1 cut(s)	162
BclI	TGATCA	2 cut(s)	121, 480
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	2 cut(s)	279, 291
BisI	GCNGC	2 cut(s)	648, 732
BlsI	GCNGC	2 cut(s)	649, 733
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	616
BmgBI	CACGTC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	616
BmiI	GGNNCC	1 cut(s)	617
BmrFI	CCNGG	1 cut(s)	162
BmrI	ACTGGG	1 cut(s)	688
BmsI	GCATC	3 cut(s)	175, 574, 583
BmuI	ACTGGG	1 cut(s)	688
Bpu14I	TTCGAA	1 cut(s)	348
BpuEI	CTTGAG	2 cut(s)	776, 782
BsaBI	GATNNNNATC	2 cut(s)	588, 683
BsaJI	CCNNGG	2 cut(s)	137, 161
BsaXI	ACNNNNNCTCC	2 cut(s)	853, 883
Bsc4I	CCNNNNNNNGG	1 cut(s)	875
Bse1I	ACTGG	4 cut(s)	70, 312, 669, 694
Bse8I	GATNNNNATC	2 cut(s)	588, 683
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	137, 161
BseGI	GGATG	3 cut(s)	10, 632, 766
BseJI	GATNNNNATC	2 cut(s)	588, 683
BseLI	CCNNNNNNNGG	1 cut(s)	875
BseMII	CTCAG	2 cut(s)	260, 376
BseNI	ACTGG	4 cut(s)	70, 312, 669, 694
BseRI	GAGGAG	1 cut(s)	789
BseXI	GCAGC	2 cut(s)	659, 718
BsgI	GTGCAG	1 cut(s)	717
BshFI	GGCC	2 cut(s)	69, 868
BslFI	GGGAC	2 cut(s)	283, 629
BslI	CCNNNNNNNGG	1 cut(s)	875
BsmAI	GTCTC	1 cut(s)	33
BsmBI	CGTCTC	1 cut(s)	33
BsmFI	GGGAC	2 cut(s)	283, 629
BsnI	GGCC	2 cut(s)	69, 868
Bsp119I	TTCGAA	1 cut(s)	348
Bsp143I	GATC	3 cut(s)	121, 480, 801
Bsp19I	CCATGG	1 cut(s)	137
BspACI	CCGC	1 cut(s)	276
BspANI	GGCC	2 cut(s)	69, 868
BspCNI	CTCAG	2 cut(s)	259, 375
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	1 cut(s)	617
BspT104I	TTCGAA	1 cut(s)	348
BsrI	ACTGG	4 cut(s)	70, 312, 669, 694
BssECI	CCNNGG	2 cut(s)	137, 161
BssMI	GATC	3 cut(s)	121, 480, 801
BssT1I	CCWWGG	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	658
Bst6I	CTCTTC	1 cut(s)	626
BstBI	TTCGAA	1 cut(s)	348
BstC8I	GCNNGC	2 cut(s)	296, 322
BstDEI	CTNAG	2 cut(s)	246, 362
BstDSI	CCRYGG	1 cut(s)	137
BstF5I	GGATG	3 cut(s)	10, 632, 766
BstKTI	GATC	3 cut(s)	124, 483, 804
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	3 cut(s)	121, 480, 801
BstMWI	GCNNNNNNNGC	1 cut(s)	647
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	2 cut(s)	231, 541
BstSCI	CCNGG	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	659, 718
BstXI	CCANNNNNNTGG	1 cut(s)	841
BsuRI	GGCC	2 cut(s)	69, 868
BtgI	CCRYGG	1 cut(s)	137
BtrI	CACGTC	1 cut(s)	27
BtsCI	GGATG	3 cut(s)	10, 632, 766
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	4 cut(s)	63, 319, 663, 756
Cac8I	GCNNGC	2 cut(s)	296, 322
CciI	TCATGA	1 cut(s)	577
Cfr13I	GGNCC	1 cut(s)	616
Csp6I	GTAC	1 cut(s)	99
CspCI	CAANNNNNGTGG	2 cut(s)	639, 674
CviAII	CATG	6 cut(s)	138, 228, 538, 567, 578, 839
CviJI	RGCY	8 cut(s)	69, 214, 294, 456, 557, 731, 796, 868
CviKI_1	RGCY	8 cut(s)	69, 214, 294, 456, 557, 731, 796, 868
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	2 cut(s)	246, 362
DpnI	GATC	3 cut(s)	123, 482, 803
DpnII	GATC	3 cut(s)	121, 480, 801
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	626
EarI	CTCTTC	1 cut(s)	626
Eco130I	CCWWGG	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	616
Eco57I	CTGAAG	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	137
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	6 cut(s)	141, 231, 541, 570, 581, 842
FaqI	GGGAC	2 cut(s)	283, 629
FatI	CATG	6 cut(s)	137, 227, 537, 566, 577, 838
FbaI	TGATCA	2 cut(s)	121, 480
Fnu4HI	GCNGC	2 cut(s)	648, 732
FokI	GGATG	3 cut(s)	17, 639, 773
Fsp4HI	GCNGC	2 cut(s)	648, 732
FspBI	CTAG	2 cut(s)	279, 291
GluI	GCNGC	2 cut(s)	648, 732
HaeIII	GGCC	2 cut(s)	69, 868
Hin1II	CATG	6 cut(s)	141, 231, 541, 570, 581, 842
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	3 cut(s)	104, 239, 862
HphI	GGTGA	4 cut(s)	150, 194, 275, 396
Hpy166II	GTNNAC	2 cut(s)	63, 415
Hpy188I	TCNGA	4 cut(s)	52, 365, 852, 861
Hpy188III	TCNNGA	4 cut(s)	218, 333, 578, 799
Hpy8I	GTNNAC	2 cut(s)	63, 415
HpyAV	CCTTC	3 cut(s)	260, 493, 616
HpyCH4III	ACNGT	1 cut(s)	658
HpyCH4IV	ACGT	2 cut(s)	26, 488
HpyCH4V	TGCA	6 cut(s)	58, 231, 298, 524, 574, 734
HpyF10VI	GCNNNNNNNGC	1 cut(s)	647
HpyF3I	CTNAG	2 cut(s)	246, 362
HpySE526I	ACGT	2 cut(s)	26, 488
Hsp92II	CATG	6 cut(s)	141, 231, 541, 570, 581, 842
Ksp22I	TGATCA	2 cut(s)	121, 480
Kzo9I	GATC	3 cut(s)	121, 480, 801
Lsp1109I	GCAGC	2 cut(s)	659, 718
LweI	GCATC	3 cut(s)	175, 574, 583
MaeI	CTAG	2 cut(s)	279, 291
MaeII	ACGT	2 cut(s)	26, 488
MaeIII	GTNAC	1 cut(s)	402
MalI	GATC	3 cut(s)	123, 482, 803
MboI	GATC	3 cut(s)	121, 480, 801
MboII	GAAGA	6 cut(s)	147, 276, 446, 464, 593, 643
MlsI	TGGCCA	1 cut(s)	69
MluCI	AATT	5 cut(s)	53, 221, 515, 529, 607
MluNI	TGGCCA	1 cut(s)	69
MlyI	GAGTC	2 cut(s)	248, 856
MmeI	TCCRAC	1 cut(s)	858
MnlI	CCTC	6 cut(s)	310, 329, 723, 767, 770, 879
Mox20I	TGGCCA	1 cut(s)	69
MroXI	GAANNNNTTC	1 cut(s)	608
MscI	TGGCCA	1 cut(s)	69
MseI	TTAA	1 cut(s)	689
MslI	CAYNNNNRTG	1 cut(s)	582
Msp20I	TGGCCA	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	647
NcoI	CCATGG	1 cut(s)	137
NdeII	GATC	3 cut(s)	121, 480, 801
NlaIII	CATG	6 cut(s)	141, 231, 541, 570, 581, 842
NlaIV	GGNNCC	1 cut(s)	617
NmeAIII	GCCGAG	2 cut(s)	583, 844
NmuCI	GTSAC	1 cut(s)	402
NspI	RCATGY	2 cut(s)	231, 541
NspV	TTCGAA	1 cut(s)	348
PagI	TCATGA	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	608
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	2 cut(s)	649, 733
PleI	GAGTC	2 cut(s)	247, 856
PpsI	GAGTC	2 cut(s)	247, 856
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	617
PspPI	GGNCC	1 cut(s)	616
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	1 cut(s)	689
SatI	GCNGC	2 cut(s)	648, 732
Sau3AI	GATC	3 cut(s)	121, 480, 801
Sau96I	GGNCC	1 cut(s)	616
SchI	GAGTC	2 cut(s)	248, 856
ScrFI	CCNGG	1 cut(s)	162
SfaNI	GCATC	3 cut(s)	175, 574, 583
SfuI	TTCGAA	1 cut(s)	348
SinI	GGWCC	1 cut(s)	616
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	2 cut(s)	791, 797
SmoI	CTYRAG	2 cut(s)	791, 797
Sse9I	AATT	5 cut(s)	53, 221, 515, 529, 607
SsiI	CCGC	1 cut(s)	276
SspMI	CTAG	2 cut(s)	279, 291
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	658
TaiI	ACGT	2 cut(s)	29, 491
TaqI	TCGA	1 cut(s)	348
TasI	AATT	5 cut(s)	53, 221, 515, 529, 607
TatI	WGTACW	1 cut(s)	98
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	689
Tru9I	TTAA	1 cut(s)	689
TscAI	CASTG	4 cut(s)	70, 319, 663, 756
TseFI	GTSAC	1 cut(s)	402
TseI	GCWGC	2 cut(s)	647, 731
Tsp45I	GTSAC	1 cut(s)	402
TspDTI	ATGAA	6 cut(s)	98, 462, 464, 535, 594, 773
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	4 cut(s)	70, 319, 663, 756
VpaK11BI	GGWCC	1 cut(s)	616
XapI	RAATTY	1 cut(s)	529
XceI	RCATGY	2 cut(s)	231, 541
XmnI	GAANNNNTTC	1 cut(s)	608
XspI	CTAG	2 cut(s)	279, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.