Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002897

Physical Location & Seq

Genomic Coordinates Forward (+)

6209343 .. 6214359

Gene Structure 5017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG080200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2685 bp

ATGGAGGTTGAGAAAAAACGTTCAAAAGGGTTTTTCAATTTATTTGATTGGAATGGCAAATCTCGGAAGAAGCTCTTCTCCAGCAATTCTGAATCATCAGGATCACAGCAAGGAAAAGAGAATGTGGAGAATTTCTCACAGACACGGCTCAATAGGGTTGAGGTGGATGAGAAAGGAGCAAGTTCAAGTAATAAAGGAAGCAGCGATTGGAATTGTGCTTCGTCGGTGACTAGTGATGAAGGAGGTGGGAGTAGAGCCCCTGGGGTAGTTGCTAGATTAATGGGTCTTGATTCATTGCCAACTTCAACGGTTACTGATTCATCTTCTACCTTATCAATCGACTCCCACTCACTTAGAGTACCTCATCATGACAGGGTCAATCCTAATTTGTGGGGTGATTTTTATGCCATGGATTACATGAATATGCCCAACAAGCTGGATACAGTTTCAAGGAATCCTGTAGAATCTAGGGCACAGAGGGTGCAAAACCGACCAATTGAGAGATTTCAAACAGAAGTCTTGCCTCCAAAATCAGCCAAGTCTATTCCAGTTACTCACCATAAGCTTTTGTCACCTATCAAGACTCCTGGCTTCATCCCAACAAAGAATGCGGCTTACATAATGGAAGCAGCTGCAAAGATGATTGAGGCAAGTCCTAGAGAATCTTCCAAGAGCGAAATGTCATCTATGAGGTCGTCTTCAATTCCATTGAGAATTCGGGATTTGAAAGAGAAGATGGAAGCTGTGCCTAAAGTATCAAGACCTGAACGACCCAATGCTAAATATATGAAAGGAAGGCCTGGTTACAGGAGCAGCTATAATGGGTCAGATAATGTACCAGTACTCAAGGCTTCTGTGGATTCAGAAAAACAGAATTACAATGATATAAGGAATAAGGGAAAAGCAGTACCACTTGCAGTACAAGCAAAGGCCAATCTTCAGAGAAAGGAAGGGTCCCCTCCCTTCAGTCATAGGAGTTTCACAAACCAGAAGGAACAGAATGAGGTCAAACAAAATGAGTTCTCCAAGAGCCGGCAAAGCACACAGGGACCTGTGCATAAGAGAACTTCTGCTGTCAGCAACAGAAGTGTGCTCAAGCAGAACAACCAGAAGCAGAATTGTGTATCTAACAAAGATAAAATGACTTCAAAGAATGTGGTTCCTAATCAACCTACTAGAAGAATGCGGTCAACTAATGGCTCTAGTCGGCCAAATAGGACTGTAAATAAGGTTCTTGTAAACTCTGAAACTGGATCAAGAAAGATGGGCTCAATGGCAACTGCCACTGGAAAGGAATTCTCCACAGTTAAAGATGTCTCTGGGAAGATACGGTCTGCTAGTCAGGACTTTCATTTAGAAGAAACTGCTGCTTATAATGGATTGATCGGTAAGGATGAAAGGTCTGTAAAATGTAATGTTGCAATGGAGGGGTACACCAATTTGTGCATGGATAATAGAAAACAAGACATGGATGTTGTTTCATTTACATTCACTTCTCCCCTGAAAAAATCCATTTCTGAATTGCAGTCCACTGGCCAAGTTGTGAGTATGAATAACAGATTTTGTATCGATTCTTTTGGTAATAATGATCAGCAAAGCTACCCAGAGCATTTTACATTTTCTTCACCTGGGTTGAATGTGATTGGTGGTGATGCTTTGAGTGTTCTTTTGGAACAAAAGCTTCAAGAATTGACATGCAAAGTTGAGTCATCTCAGCATAACCTGTTTGGTGAAGGGACTTCTGCTAGTTCTTCGTCTAGCTTGCAAGATTTGGTTTCCAGTGAGGCAACCACCACATCAAGAGGCAAGAAGTTCGAACTTGGTTTGCTCAGAGATAAAGTTGATGACATAGCAGACTTTGATTTTCCGTCACCTGATGTAAACCAAAAGTGGCAGGGACCAGAAGGGATGGAAGAGTGTAGCAGTAGCAGCAAAAACAGTGGAACTGGAAAGGATTTTGATTATCATCTTAACCCAGTTTCATTTTTTGAACCCTCGTTTGAGAGTGGAAGCTGCACAGATAACAGAAGCAGTGCCAATGGATGTGAGAGTGAGAGGTGTTCATTTGCGCAAGCTCAAGATCAAATCAATTTATTCTCCACATTTGAAATCCAACCATGTGGTGCTTCCGAGTTATCTGACTCGGCCTTCACTTGGGAAGTGAGTGGAAAAAATATGACTAGAATATTTGGTTTTCATTCTCCCAATCAATCAAACGATTGGGAACGAGAATATGTGCAGTATATACTTAGCAAGGTGGACTTAGTGATTGAAGATTTTGCATTGGGTGATGCCAACTGTGCTATTTCCCCAAATCTCTTTGATAATTTACACTATCAAGAAGAGTATCCGAAGCTCCAGCAGAAGCTCTTGTTTGACAGTGTAAACGAAAGCCTGCACAACAGATGCAAGCAAATTGTTGTTGGAAGCCGGAAAGCATGGGATAGATGGGATACATTGTCGCAGAGGAAGGAATCGTTGGCTGAGGAACTGTATAAAGAGATTTCGGTTTGGAAAAATATGGGGGACTTGATGGCCGATGACCTTGTGGACAAGGACATGAGCACTCAGCGTGGGAGATGGCTCGACTTTGAGATTGAAGCATTTGAGGAAGCTGTAGAGATTGAGAAGGGAATACTAGGTTGTTTAGTAGATGAGTTAGTATCTGATTTTCTGCTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

894

Amino Acids

99.82

Weight (kDa)

6.75

Isoelectric Point (pI)

56.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VARLMGL	PF14383	74 - 104	1.7e-14	DUF761-associated sequence motif
DUF4378	PF14309	743 - 886	1.1e-29	Domain of unknown function (DUF4378)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05740 AT3G05740
fragaria_vesca	FvH4_6g07200 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210
malus_domestica	MD04G1195500.v1.1 MD12G1207600.v1.1 MD12G1207700.v1.1 MD12G1207800.v1.1
prunus_persica	Prupe.6G315200_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1
pyrus_communis	pycom04g17270 pycom12g19520 pycom12g19530
rosa_chinensis	RchiOBHm_Chr3g0456831 RchiOBHm_Chr3g0456841
rosa_laevigata	RLG00000025275
rosa_multiflora	Rmu_co8434835.1_g000001 Rmu_sc0000133.1_g000020
rosa_roxburghii	Rroxscaffold_6G00422450 Rroxscaffold_6G00422460
rosa_rugosa	Rorug03G0016100 Rorug03G0016200 Rorug03G0016300.1
rosa_samantha	Rh3AG076400 Rh3AG076600 Rh3BG078200 Rh3BG078400 Rh3CG078000 Rh3CG078200 Rh3DG080100 Rh3DG080200
rosa_wichuraiana	Rw3G006560 Rw3G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1374
Acc16I	TGCGCA	1 cut(s)	2070
AciI	CCGC	2 cut(s)	611, 1186
AclI	AACGTT	1 cut(s)	19
AclWI	GGATC	2 cut(s)	109, 1261
AcoI	YGGCCR	3 cut(s)	1208, 1534, 2535
AcsI	RAATTY	3 cut(s)	130, 714, 1295
AcuI	CTGAAG	2 cut(s)	923, 949
AfaI	GTAC	6 cut(s)	360, 837, 843, 909, 921, 1433
AfiI	CCNNNNNNNGG	2 cut(s)	1032, 2154
AhlI	ACTAGT	1 cut(s)	230
AjnI	CCWGG	4 cut(s)	259, 586, 799, 1627
AjuI	GAANNNNNNNTTGG	4 cut(s)	190, 222, 2462, 2494
Alw21I	GWGCWC	2 cut(s)	1095, 2567
Alw26I	GTCTC	1 cut(s)	1321
AlwI	GGATC	2 cut(s)	109, 1261
AoxI	GGCC	6 cut(s)	797, 930, 1208, 1534, 2145, 2535
ApeKI	GCWGC	7 cut(s)	201, 629, 632, 813, 1367, 1929, 2013
ApoI	RAATTY	3 cut(s)	130, 714, 1295
AseI	ATTAAT	1 cut(s)	278
Asp700I	GAANNNNTTC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	2071
AspS9I	GGNCC	3 cut(s)	954, 1049, 1898
AsuHPI	GGTGA	9 cut(s)	238, 407, 548, 564, 1617, 1661, 1742, 1863, 2300
AsuII	TTCGAA	1 cut(s)	1815
AvaII	GGWCC	3 cut(s)	954, 1049, 1898
BaeGI	GKGCMC	1 cut(s)	475
BalI	TGGCCA	1 cut(s)	1536
BanII	GRGCYC	2 cut(s)	259, 1271
BbsI	GAAGAC	1 cut(s)	690
Bbv12I	GWGCWC	2 cut(s)	1095, 2567
BbvCI	CCTCAGC	1 cut(s)	2484
BbvI	GCAGC	7 cut(s)	213, 619, 641, 825, 1354, 1941, 2000
BccI	CCATC	6 cut(s)	730, 1258, 1903, 2442, 2527, 2574
BceAI	ACGGC	1 cut(s)	161
BcgI	CGANNNNNNTGC	2 cut(s)	1795, 1829
BciT130I	CCWGG	4 cut(s)	261, 588, 801, 1629
BciVI	GTATCC	3 cut(s)	433, 2358, 2446
BclI	TGATCA	1 cut(s)	1588
BcoDI	GTCTC	1 cut(s)	1321
BcuI	ACTAGT	1 cut(s)	230
BfmI	CTRYAG	2 cut(s)	459, 2616
BfuI	GTATCC	3 cut(s)	433, 2358, 2446
BisI	GCNGC	8 cut(s)	202, 612, 630, 633, 814, 1368, 1930, 2014
BlsI	GCNGC	8 cut(s)	203, 613, 631, 634, 815, 1369, 1931, 2015
BmcAI	AGTACT	1 cut(s)	843
Bme1390I	CCNGG	4 cut(s)	261, 588, 801, 1629
Bme18I	GGWCC	3 cut(s)	954, 1049, 1898
BmgT120I	GGNCC	3 cut(s)	954, 1049, 1898
BmiI	GGNNCC	5 cut(s)	955, 956, 1050, 1161, 1899
BmrFI	CCNGG	4 cut(s)	261, 588, 801, 1629
BmrI	ACTGGG	1 cut(s)	1970
BmsI	GCATC	3 cut(s)	1642, 2281, 2396
BmuI	ACTGGG	1 cut(s)	1970
BpiI	GAAGAC	1 cut(s)	690
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	2 cut(s)	64, 2342
Bpu10I	CCTNAGC	1 cut(s)	2484
Bpu14I	TTCGAA	1 cut(s)	1815
BpuEI	CTTGAG	3 cut(s)	830, 1079, 2061
Bsa29I	ATCGAT	1 cut(s)	1569
BsaBI	GATNNNNATC	1 cut(s)	1965
BsaJI	CCNNGG	4 cut(s)	259, 260, 408, 1628
Bsc4I	CCNNNNNNNGG	2 cut(s)	1032, 2154
Bse118I	RCCGGY	1 cut(s)	1032
Bse1I	ACTGG	8 cut(s)	548, 839, 1255, 1291, 1537, 1779, 1951, 1976
Bse3DI	GCAATG	2 cut(s)	293, 1428
Bse8I	GATNNNNATC	1 cut(s)	1965
BseBI	CCWGG	4 cut(s)	261, 588, 801, 1629
BseCI	ATCGAT	1 cut(s)	1569
BseDI	CCNNGG	4 cut(s)	259, 260, 408, 1628
BseGI	GGATG	6 cut(s)	172, 594, 1399, 1477, 1914, 2048
BseJI	GATNNNNATC	1 cut(s)	1965
BseLI	CCNNNNNNNGG	2 cut(s)	1032, 2154
BseMI	GCAATG	2 cut(s)	293, 1428
BseMII	CTCAG	4 cut(s)	1727, 1843, 2475, 2582
BseNI	ACTGG	8 cut(s)	548, 839, 1255, 1291, 1537, 1779, 1951, 1976
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	7 cut(s)	213, 619, 641, 825, 1354, 1941, 2000
BsgI	GTGCAG	3 cut(s)	1999, 2258, 2381
BshFI	GGCC	6 cut(s)	799, 932, 1210, 1536, 2147, 2537
BshVI	ATCGAT	1 cut(s)	1569
BsiHKAI	GWGCWC	2 cut(s)	1095, 2567
BsiSI	CCGG	2 cut(s)	1033, 2431
BslFI	GGGAC	5 cut(s)	940, 1062, 1750, 1911, 2540
BslI	CCNNNNNNNGG	2 cut(s)	1032, 2154
BsmAI	GTCTC	1 cut(s)	1321
BsmFI	GGGAC	5 cut(s)	940, 1062, 1750, 1911, 2540
BsmI	GAATGC	2 cut(s)	613, 1188
BsnI	GGCC	6 cut(s)	799, 932, 1210, 1536, 2147, 2537
Bsp119I	TTCGAA	1 cut(s)	1815
Bsp1286I	GDGCHC	5 cut(s)	259, 475, 1095, 1271, 2567
Bsp143I	GATC	5 cut(s)	101, 1253, 1383, 1588, 2080
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	2 cut(s)	611, 1186
BspANI	GGCC	6 cut(s)	799, 932, 1210, 1536, 2147, 2537
BspCNI	CTCAG	4 cut(s)	1726, 1842, 2476, 2581
BspDI	ATCGAT	1 cut(s)	1569
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	5 cut(s)	955, 956, 1050, 1161, 1899
BspPI	GGATC	2 cut(s)	109, 1261
BspQI	GCTCTTC	1 cut(s)	80
BspT104I	TTCGAA	1 cut(s)	1815
BsrDI	GCAATG	2 cut(s)	293, 1428
BsrFI	RCCGGY	1 cut(s)	1032
BsrI	ACTGG	8 cut(s)	548, 839, 1255, 1291, 1537, 1779, 1951, 1976
BssAI	RCCGGY	1 cut(s)	1032
BssECI	CCNNGG	4 cut(s)	259, 260, 408, 1628
BssMI	GATC	5 cut(s)	101, 1253, 1383, 1588, 2080
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	4 cut(s)	261, 588, 801, 1629
Bst4CI	ACNGT	9 cut(s)	310, 445, 1222, 1306, 1332, 1940, 2300, 2381, 2493
Bst6I	CTCTTC	3 cut(s)	80, 1908, 2337
BstBI	TTCGAA	1 cut(s)	1815
BstC8I	GCNNGC	5 cut(s)	1034, 1763, 2073, 2396, 2411
BstDEI	CTNAG	7 cut(s)	353, 1713, 1829, 2249, 2263, 2484, 2568
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	6 cut(s)	172, 594, 1399, 1477, 1914, 2048
BstHHI	GCGC	1 cut(s)	2071
BstKTI	GATC	5 cut(s)	104, 1256, 1386, 1591, 2083
BstMAI	GTCTC	1 cut(s)	1321
BstMBI	GATC	5 cut(s)	101, 1253, 1383, 1588, 2080
BstMWI	GCNNNNNNNGC	5 cut(s)	433, 923, 1038, 1929, 2300
BstNI	CCWGG	4 cut(s)	261, 588, 801, 1629
BstNSI	RCATGY	1 cut(s)	1698
BstSCI	CCNGG	4 cut(s)	259, 586, 799, 1627
BstSFI	CTRYAG	2 cut(s)	459, 2616
BstSLI	GKGCMC	1 cut(s)	475
BstV1I	GCAGC	7 cut(s)	213, 619, 641, 825, 1354, 1941, 2000
BstV2I	GAAGAC	1 cut(s)	690
BstXI	CCANNNNNNTGG	2 cut(s)	436, 2120
Bsu15I	ATCGAT	1 cut(s)	1569
BsuI	GTATCC	3 cut(s)	433, 2358, 2446
BsuRI	GGCC	6 cut(s)	799, 932, 1210, 1536, 2147, 2537
BsuTUI	ATCGAT	1 cut(s)	1569
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	6 cut(s)	172, 594, 1399, 1477, 1914, 2048
BtsI	GCAGTG	1 cut(s)	2038
BtsIMutI	CAGTG	6 cut(s)	1284, 1530, 1786, 1945, 2038, 2386
Cac8I	GCNNGC	5 cut(s)	1034, 1763, 2073, 2396, 2411
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	2071
Cfr10I	RCCGGY	1 cut(s)	1032
Cfr13I	GGNCC	3 cut(s)	954, 1049, 1898
ClaI	ATCGAT	1 cut(s)	1569
Csp6I	GTAC	6 cut(s)	359, 836, 842, 908, 920, 1432
CspCI	CAANNNNNGTGG	4 cut(s)	1137, 1172, 1921, 1956
CviAII	CATG	9 cut(s)	368, 409, 418, 1447, 1468, 1695, 2118, 2439, 2560
CviQI	GTAC	6 cut(s)	359, 836, 842, 908, 920, 1432
DdeI	CTNAG	7 cut(s)	353, 1713, 1829, 2249, 2263, 2484, 2568
DpnI	GATC	5 cut(s)	103, 1255, 1385, 1590, 2082
DpnII	GATC	5 cut(s)	101, 1253, 1383, 1588, 2080
EaeI	YGGCCR	3 cut(s)	1208, 1534, 2535
Eam1104I	CTCTTC	3 cut(s)	80, 1908, 2337
EarI	CTCTTC	3 cut(s)	80, 1908, 2337
Eco130I	CCWWGG	1 cut(s)	408
Eco147I	AGGCCT	1 cut(s)	799
Eco24I	GRGCYC	2 cut(s)	259, 1271
Eco47I	GGWCC	3 cut(s)	954, 1049, 1898
Eco57I	CTGAAG	2 cut(s)	923, 949
EcoO109I	RGGNCCY	2 cut(s)	954, 1049
EcoRI	GAATTC	2 cut(s)	714, 1295
EcoRII	CCWGG	4 cut(s)	259, 586, 799, 1627
EcoT14I	CCWWGG	1 cut(s)	408
EcoT38I	GRGCYC	2 cut(s)	259, 1271
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	9 cut(s)	371, 412, 421, 1450, 1471, 1698, 2121, 2442, 2563
FalI	AAGNNNNNCTT	4 cut(s)	59, 91, 2246, 2278
FaqI	GGGAC	5 cut(s)	940, 1062, 1750, 1911, 2540
FatI	CATG	9 cut(s)	367, 408, 417, 1446, 1467, 1694, 2117, 2438, 2559
FbaI	TGATCA	1 cut(s)	1588
Fnu4HI	GCNGC	8 cut(s)	202, 612, 630, 633, 814, 1368, 1930, 2014
FokI	GGATG	6 cut(s)	179, 581, 1406, 1484, 1921, 2055
FriOI	GRGCYC	2 cut(s)	259, 1271
Fsp4HI	GCNGC	8 cut(s)	202, 612, 630, 633, 814, 1368, 1930, 2014
FspI	TGCGCA	1 cut(s)	2070
GlaI	GCGC	1 cut(s)	2070
GluI	GCNGC	8 cut(s)	202, 612, 630, 633, 814, 1368, 1930, 2014
GsuI	CTGGAG	2 cut(s)	64, 2342
HaeIII	GGCC	6 cut(s)	799, 932, 1210, 1536, 2147, 2537
HapII	CCGG	2 cut(s)	1033, 2431
HhaI	GCGC	1 cut(s)	2071
Hin1II	CATG	9 cut(s)	371, 412, 421, 1450, 1471, 1698, 2121, 2442, 2563
Hin6I	GCGC	1 cut(s)	2069
HinP1I	GCGC	1 cut(s)	2069
HincII	GTYRAC	1 cut(s)	1191
HindII	GTYRAC	1 cut(s)	1191
HindIII	AAGCTT	2 cut(s)	563, 1679
HpaII	CCGG	2 cut(s)	1033, 2431
HphI	GGTGA	9 cut(s)	238, 407, 548, 564, 1617, 1661, 1742, 1863, 2300
Hpy166II	GTNNAC	8 cut(s)	1191, 1240, 1434, 1530, 1882, 2260, 2386, 2551
Hpy8I	GTNNAC	8 cut(s)	1191, 1240, 1434, 1530, 1882, 2260, 2386, 2551
Hpy99I	CGWCG	1 cut(s)	226
HpyCH4III	ACNGT	9 cut(s)	310, 445, 1222, 1306, 1332, 1940, 2300, 2381, 2493
HpyCH4IV	ACGT	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	5 cut(s)	433, 923, 1038, 1929, 2300
HpyF3I	CTNAG	7 cut(s)	353, 1713, 1829, 2249, 2263, 2484, 2568
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	9 cut(s)	371, 412, 421, 1450, 1471, 1698, 2121, 2442, 2563
HspAI	GCGC	1 cut(s)	2069
KflI	GGGWCCC	1 cut(s)	954
KroI	GCCGGC	1 cut(s)	1032
KroNI	GCCGGC	1 cut(s)	1034
Ksp22I	TGATCA	1 cut(s)	1588
Kzo9I	GATC	5 cut(s)	101, 1253, 1383, 1588, 2080
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	3 cut(s)	176, 810, 2361
Lsp1109I	GCAGC	7 cut(s)	213, 619, 641, 825, 1354, 1941, 2000
LweI	GCATC	3 cut(s)	1642, 2281, 2396
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	6 cut(s)	226, 310, 550, 570, 803, 1869
MalI	GATC	5 cut(s)	103, 1255, 1385, 1590, 2082
MboI	GATC	5 cut(s)	101, 1253, 1383, 1588, 2080
MfeI	CAATTG	1 cut(s)	495
MhlI	GDGCHC	5 cut(s)	259, 475, 1095, 1271, 2567
MlsI	TGGCCA	1 cut(s)	1536
MluNI	TGGCCA	1 cut(s)	1536
MlyI	GAGTC	4 cut(s)	335, 577, 1715, 2135
MmeI	TCCRAC	2 cut(s)	2137, 2404
Mox20I	TGGCCA	1 cut(s)	1536
MroNI	GCCGGC	1 cut(s)	1032
MroXI	GAANNNNTTC	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	1536
MseI	TTAA	3 cut(s)	278, 1308, 1971
MslI	CAYNNNNRTG	1 cut(s)	422
Msp20I	TGGCCA	1 cut(s)	1536
MspA1I	CMGCKG	1 cut(s)	632
MspI	CCGG	2 cut(s)	1033, 2431
MspR9I	CCNGG	4 cut(s)	261, 588, 801, 1629
MunI	CAATTG	1 cut(s)	495
Mva1269I	GAATGC	2 cut(s)	613, 1188
MvaI	CCWGG	4 cut(s)	261, 588, 801, 1629
MwoI	GCNNNNNNNGC	5 cut(s)	433, 923, 1038, 1929, 2300
NaeI	GCCGGC	1 cut(s)	1034
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	5 cut(s)	101, 1253, 1383, 1588, 2080
NgoMIV	GCCGGC	1 cut(s)	1032
NlaIII	CATG	9 cut(s)	371, 412, 421, 1450, 1471, 1698, 2121, 2442, 2563
NlaIV	GGNNCC	5 cut(s)	955, 956, 1050, 1161, 1899
NmeAIII	GCCGAG	1 cut(s)	2123
NmuCI	GTSAC	3 cut(s)	226, 570, 1869
NsbI	TGCGCA	1 cut(s)	2070
NspI	RCATGY	1 cut(s)	1698
NspV	TTCGAA	1 cut(s)	1815
PagI	TCATGA	1 cut(s)	367
PasI	CCCWGGG	1 cut(s)	260
PceI	AGGCCT	1 cut(s)	799
PciSI	GCTCTTC	1 cut(s)	80
PctI	GAATGC	2 cut(s)	613, 1188
PdiI	GCCGGC	1 cut(s)	1034
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	9 cut(s)	92, 290, 317, 454, 464, 662, 860, 1571, 2474
PflFI	GACNNNGTC	1 cut(s)	374
PkrI	GCNGC	8 cut(s)	203, 613, 631, 634, 815, 1369, 1931, 2015
PleI	GAGTC	4 cut(s)	335, 577, 1714, 2135
PpsI	GAGTC	4 cut(s)	335, 577, 1714, 2135
PpuMI	RGGWCCY	2 cut(s)	954, 1049
PshBI	ATTAAT	1 cut(s)	278
PsiI	TTATAA	1 cut(s)	1374
Psp1406I	AACGTT	1 cut(s)	19
Psp5II	RGGWCCY	2 cut(s)	954, 1049
Psp6I	CCWGG	4 cut(s)	259, 586, 799, 1627
PspGI	CCWGG	4 cut(s)	259, 586, 799, 1627
PspN4I	GGNNCC	5 cut(s)	955, 956, 1050, 1161, 1899
PspPI	GGNCC	3 cut(s)	954, 1049, 1898
PspPPI	RGGWCCY	2 cut(s)	954, 1049
PsrI	GAACNNNNNNTAC	2 cut(s)	1215, 1247
PsyI	GACNNNGTC	1 cut(s)	374
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	6 cut(s)	360, 837, 843, 909, 921, 1433
RsaNI	GTAC	6 cut(s)	359, 836, 842, 908, 920, 1432
RseI	CAYNNNNRTG	1 cut(s)	422
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	278, 1308, 1971
SatI	GCNGC	8 cut(s)	202, 612, 630, 633, 814, 1368, 1930, 2014
Sau3AI	GATC	5 cut(s)	101, 1253, 1383, 1588, 2080
Sau96I	GGNCC	3 cut(s)	954, 1049, 1898
ScaI	AGTACT	1 cut(s)	843
SchI	GAGTC	4 cut(s)	335, 577, 1715, 2135
ScrFI	CCNGG	4 cut(s)	261, 588, 801, 1629
SduI	GDGCHC	5 cut(s)	259, 475, 1095, 1271, 2567
SfaNI	GCATC	3 cut(s)	1642, 2281, 2396
SfcI	CTRYAG	2 cut(s)	459, 2616
SfuI	TTCGAA	1 cut(s)	1815
SinI	GGWCC	3 cut(s)	954, 1049, 1898
SmiMI	CAYNNNNRTG	1 cut(s)	422
SmlI	CTYRAG	3 cut(s)	845, 1094, 2076
SmoI	CTYRAG	3 cut(s)	845, 1094, 2076
SpeI	ACTAGT	1 cut(s)	230
SseBI	AGGCCT	1 cut(s)	799
SsiI	CCGC	2 cut(s)	611, 1186
SspI	AATATT	1 cut(s)	2187
StuI	AGGCCT	1 cut(s)	799
StyD4I	CCNGG	4 cut(s)	259, 586, 799, 1627
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	9 cut(s)	310, 445, 1222, 1306, 1332, 1940, 2300, 2381, 2493
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	4 cut(s)	339, 1569, 1815, 2586
TatI	WGTACW	2 cut(s)	841, 919
TauI	GCSGC	1 cut(s)	614
TfiI	GAWTC	9 cut(s)	92, 290, 317, 454, 464, 662, 860, 1571, 2474
Tru1I	TTAA	3 cut(s)	278, 1308, 1971
Tru9I	TTAA	3 cut(s)	278, 1308, 1971
TscAI	CASTG	6 cut(s)	1291, 1537, 1786, 1945, 2038, 2386
TseFI	GTSAC	3 cut(s)	226, 570, 1869
TseI	GCWGC	7 cut(s)	201, 629, 632, 813, 1367, 1929, 2013
Tsp45I	GTSAC	3 cut(s)	226, 570, 1869
TspGWI	ACGGA	1 cut(s)	1857
TspRI	CASTG	6 cut(s)	1291, 1537, 1786, 1945, 2038, 2386
Tth111I	GACNNNGTC	1 cut(s)	374
VpaK11BI	GGWCC	3 cut(s)	954, 1049, 1898
VspI	ATTAAT	1 cut(s)	278
XapI	RAATTY	3 cut(s)	130, 714, 1295
XceI	RCATGY	1 cut(s)	1698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1444
XmnI	GAANNNNTTC	1 cut(s)	74
ZrmI	AGTACT	1 cut(s)	843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.