Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002897

Physical Location & Seq

Genomic Coordinates Reverse (-)

1289701 .. 1293798

Gene Structure 4098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0016100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGGGAACGATACAGAGTTGGTGACCCCAGGTGAAAAGCTTGGAAGAGCCTCCGAATTCAAAGCAGGCAGAGGTGCCTACGTGTCACCTGATAATCTCACCGTCTACGCTTCCCTTACTGGCCTCCGCCGCATCCTATCCCCGCCTCCTGACTCACCTGACCAGAGACCCATTGTGGAGGTAACTGGTCACAAGGCCCATGGTGCTATTCCGGAGCCTGGATCTATTGTCATTGCCAGAGTTACCAAAGTGATGGCCAGAATGGCTTCTGCTGATATTATGTGTCTAGGCACCAAGTCTGTGCGGGAAAACTTTACCGGTATTATTAGGCTTCAAGATATTAGAGCAACCGAGATTGATAAAGTGGATATGCACAAGTCTTTTCACCCTGGTGACATTGTCAGAGCTATTGTGCTATCCCTTGGAGATGCAAGAGCTTACTTTCTATCAACTGCAAAGAATGAGCTGGGTGTTATTTCTGCTCAGAGTGCAGCAGGTGTGCCAATGGTGGCAATAAGTTGGACAGAGATGCAATGCCCCATTACAGGGCAAATTGAGCACAGGAAGGTTGCTAAGAATCTAATGGGGCCTAGGTGGAAAGGAAGGGGCTTCAAAGCGAAAGCTCTTGCAGACCCCATGTCAAAGATAGTACTGCAGCTCCAGTCTTCTCTAAATCAATCAAATTGTGAAGGATTGCTATGTGGGTGCAGTGTGCTTCTCTCAGTGGAAGCAGAACAAGCTGATCTCCTTAACCGTTCGTGCTTTGGTGAAGCCATGGTTACTGCTGAGAAGGATAAGCAATGGTTTGAGTTGAGTTTGGAGGAGGGCTTTTATCTGAGCTATGCTCTAAAATGCCTCAGGATAGTTGAAGATAAATGTCTGAAGAGTGATGAGCAGCTATGGCCGTGCATGAAGTCTAGAAGTGCATTGTTTCCGTATTTTTATAAGGCGTATTGTCATCTTAGAATGAAGAATTGGGTTGTTATGTCGGGGATTACATATGGTGCGGACTTTGTTGCTTACCGTCATCATCCGGAGTTGGTACATTCTGAATATGCGGTGATTGTGTCCTTGGAGGAGGAGGAGGGTGGTGCAAATAATCGATTGAGGGTGTGGTCTGATGTGCATTGCGCTACTCGGCTTTGTGGAGGTGTGGCAAAGACATTACTGGTTCTTGATATCAGCAGAAATGGTCATAGTGCAGACTCTCCATCGTGTTTGGAGAGTTATACTGTCAAGGAGCGCACGATCACAAGATGGAATCCAGAACAGTGCCGCGAAGATCATACAATGGTTGAAAGTGAAAATGGAGCCAAGGAAGAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031668 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042221 GO:0042623 GO:0042631 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

442

Amino Acids

48.94

Weight (kDa)

6.65

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECR1_N	PF14382	7 - 45	3.6e-09	Exosome complex exonuclease RRP4 N-terminal region
EXOSC1	PF10447	100 - 141	3.1e-11	Exosome component EXOSC1/CSL4
tRNA_int_endo_N	PF02778	230 - 301	4.1e-12	tRNA intron endonuclease, N-terminal domain
tRNA_int_endo	PF01974	315 - 397	5.3e-14	tRNA intron endonuclease, catalytic C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05740 AT3G05740
fragaria_vesca	FvH4_6g07200 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210
malus_domestica	MD04G1195500.v1.1 MD12G1207600.v1.1 MD12G1207700.v1.1 MD12G1207800.v1.1
prunus_persica	Prupe.6G315200_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1
pyrus_communis	pycom04g17270 pycom12g19520 pycom12g19530
rosa_chinensis	RchiOBHm_Chr3g0456831 RchiOBHm_Chr3g0456841
rosa_laevigata	RLG00000025275
rosa_multiflora	Rmu_co8434835.1_g000001 Rmu_sc0000133.1_g000020
rosa_roxburghii	Rroxscaffold_6G00422450 Rroxscaffold_6G00422460
rosa_rugosa	Rorug03G0016100 Rorug03G0016200 Rorug03G0016300.1
rosa_samantha	Rh3AG076400 Rh3AG076600 Rh3BG078200 Rh3BG078400 Rh3CG078000 Rh3CG078200 Rh3DG080100 Rh3DG080200
rosa_wichuraiana	Rw3G006560 Rw3G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	945
AarI	CACCTGC	1 cut(s)	485
Acc36I	ACCTGC	1 cut(s)	485
AccB1I	GGYRCC	2 cut(s)	74, 290
AccI	GTMKAC	1 cut(s)	105
AccII	CGCG	1 cut(s)	1278
AccIII	TCCGGA	2 cut(s)	211, 1033
AciI	CCGC	7 cut(s)	127, 130, 143, 304, 1007, 1058, 1276
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	2 cut(s)	255, 902
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	902
AfaI	GTAC	2 cut(s)	651, 1044
AfiI	CCNNNNNNNGG	3 cut(s)	218, 545, 546
AflIII	ACRYGT	1 cut(s)	81
AgeI	ACCGGT	1 cut(s)	317
AgsI	TTSAA	5 cut(s)	61, 335, 613, 869, 1298
AhdI	GACNNNNNGTC	1 cut(s)	637
AjnI	CCWGG	3 cut(s)	28, 217, 388
AjuI	GAANNNNNNNTTGG	2 cut(s)	958, 990
AleI	CACNNNNGTG	1 cut(s)	390
AluBI	AGCT	9 cut(s)	40, 407, 437, 466, 623, 658, 740, 840, 898
AluI	AGCT	9 cut(s)	40, 407, 437, 466, 623, 658, 740, 840, 898
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	229
Aor13HI	TCCGGA	2 cut(s)	211, 1033
AoxI	GGCC	5 cut(s)	121, 195, 255, 587, 902
ApeKI	GCWGC	3 cut(s)	491, 655, 895
ApoI	RAATTY	1 cut(s)	56
AsiGI	ACCGGT	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	265
AspA2I	CCTAGG	1 cut(s)	590
AspLEI	GCGC	2 cut(s)	1133, 1245
AspS9I	GGNCC	2 cut(s)	196, 587
AsuHPI	GGTGA	9 cut(s)	34, 44, 78, 91, 147, 377, 404, 779, 1072
AvrII	CCTAGG	1 cut(s)	590
AxyI	CCTNAGG	1 cut(s)	857
BalI	TGGCCA	1 cut(s)	257
BanI	GGYRCC	2 cut(s)	74, 290
BbsI	GAAGAC	1 cut(s)	657
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	3 cut(s)	503, 667, 907
BccI	CCATC	3 cut(s)	247, 1219, 1251
BceAI	ACGGC	1 cut(s)	889
BciT130I	CCWGG	3 cut(s)	30, 219, 390
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	3 cut(s)	287, 591, 918
BfmI	CTRYAG	1 cut(s)	653
BfuAI	ACCTGC	1 cut(s)	485
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	5 cut(s)	130, 492, 656, 896, 1276
BlnI	CCTAGG	1 cut(s)	590
BlsI	GCNGC	5 cut(s)	131, 493, 657, 897, 1277
BmcAI	AGTACT	1 cut(s)	651
Bme1390I	CCNGG	3 cut(s)	30, 219, 390
BmeRI	GACNNNNNGTC	1 cut(s)	637
BmgT120I	GGNCC	2 cut(s)	196, 587
BmiI	GGNNCC	5 cut(s)	76, 216, 292, 588, 1312
BmrFI	CCNGG	3 cut(s)	30, 219, 390
BmsI	GCATC	3 cut(s)	141, 418, 519
BpiI	GAAGAC	1 cut(s)	657
BplI	GAGNNNNNCTC	2 cut(s)	829, 861
BpmI	CTGGAG	1 cut(s)	644
Bsa29I	ATCGAT	1 cut(s)	1102
BsaAI	YACGTR	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	8 cut(s)	28, 199, 388, 421, 590, 774, 1071, 1314
BsaWI	WCCGGW	3 cut(s)	211, 317, 1033
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 545, 546
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	4 cut(s)	124, 190, 661, 1173
Bse21I	CCTNAGG	1 cut(s)	857
Bse3DI	GCAATG	4 cut(s)	231, 539, 806, 1126
BseAI	TCCGGA	2 cut(s)	211, 1033
BseBI	CCWGG	3 cut(s)	30, 219, 390
BseCI	ATCGAT	1 cut(s)	1102
BseDI	CCNNGG	8 cut(s)	28, 199, 388, 421, 590, 774, 1071, 1314
BseGI	GGATG	2 cut(s)	132, 1030
BseLI	CCNNNNNNNGG	3 cut(s)	218, 545, 546
BseMI	GCAATG	4 cut(s)	231, 539, 806, 1126
BseMII	CTCAG	5 cut(s)	497, 735, 777, 827, 871
BseNI	ACTGG	4 cut(s)	124, 190, 661, 1173
BseRI	GAGGAG	4 cut(s)	836, 1091, 1094, 1097
BseXI	GCAGC	3 cut(s)	503, 667, 907
BseYI	CCCAGC	1 cut(s)	466
BsgI	GTGCAG	3 cut(s)	510, 727, 1221
Bsh1236I	CGCG	1 cut(s)	1278
BshFI	GGCC	5 cut(s)	123, 197, 257, 589, 904
BshNI	GGYRCC	2 cut(s)	74, 290
BshTI	ACCGGT	1 cut(s)	317
BshVI	ATCGAT	1 cut(s)	1102
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	3 cut(s)	212, 318, 1034
BslI	CCNNNNNNNGG	3 cut(s)	218, 545, 546
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	5 cut(s)	123, 197, 257, 589, 904
Bso31I	GGTCTC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp13I	TCCGGA	2 cut(s)	211, 1033
Bsp143I	GATC	4 cut(s)	221, 742, 1248, 1282
Bsp19I	CCATGG	2 cut(s)	199, 774
BspACI	CCGC	7 cut(s)	127, 130, 143, 304, 1007, 1058, 1276
BspANI	GGCC	5 cut(s)	123, 197, 257, 589, 904
BspCNI	CTCAG	5 cut(s)	496, 734, 778, 828, 870
BspDI	ATCGAT	1 cut(s)	1102
BspEI	TCCGGA	2 cut(s)	211, 1033
BspFNI	CGCG	1 cut(s)	1278
BspLI	GGNNCC	5 cut(s)	76, 216, 292, 588, 1312
BspMAI	CTGCAG	1 cut(s)	657
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	40
BspT107I	GGYRCC	2 cut(s)	74, 290
BspTNI	GGTCTC	1 cut(s)	160
BsrDI	GCAATG	4 cut(s)	231, 539, 806, 1126
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	4 cut(s)	124, 190, 661, 1173
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	8 cut(s)	28, 199, 388, 421, 590, 774, 1071, 1314
BssMI	GATC	4 cut(s)	221, 742, 1248, 1282
BssT1I	CCWWGG	6 cut(s)	199, 421, 590, 774, 1071, 1314
Bst2UI	CCWGG	3 cut(s)	30, 219, 390
Bst4CI	ACNGT	5 cut(s)	103, 755, 1025, 1234, 1272
Bst6I	CTCTTC	3 cut(s)	40, 878, 1314
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	7 cut(s)	483, 573, 721, 786, 836, 857, 962
BstDSI	CCRYGG	2 cut(s)	199, 774
BstEII	GGTNACC	1 cut(s)	22
BstF5I	GGATG	2 cut(s)	132, 1030
BstFNI	CGCG	1 cut(s)	1278
BstHHI	GCGC	2 cut(s)	1133, 1245
BstKTI	GATC	4 cut(s)	224, 745, 1251, 1285
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	4 cut(s)	221, 742, 1248, 1282
BstMWI	GCNNNNNNNGC	7 cut(s)	129, 203, 263, 488, 556, 737, 901
BstNI	CCWGG	3 cut(s)	30, 219, 390
BstPI	GGTNACC	1 cut(s)	22
BstSCI	CCNGG	3 cut(s)	28, 217, 388
BstSFI	CTRYAG	1 cut(s)	653
BstUI	CGCG	1 cut(s)	1278
BstV1I	GCAGC	3 cut(s)	503, 667, 907
BstV2I	GAAGAC	1 cut(s)	657
BstX2I	RGATCY	1 cut(s)	221
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	221
Bsu15I	ATCGAT	1 cut(s)	1102
Bsu36I	CCTNAGG	1 cut(s)	857
BsuRI	GGCC	5 cut(s)	123, 197, 257, 589, 904
BsuTUI	ATCGAT	1 cut(s)	1102
BtgI	CCRYGG	2 cut(s)	199, 774
BtsCI	GGATG	2 cut(s)	132, 1030
BtsI	GCAGTG	1 cut(s)	715
BtsIMutI	CAGTG	3 cut(s)	715, 729, 1277
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	1 cut(s)	67
CfoI	GCGC	2 cut(s)	1133, 1245
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	196, 587
ClaI	ATCGAT	1 cut(s)	1102
Csp6I	GTAC	2 cut(s)	650, 1043
CspAI	ACCGGT	1 cut(s)	317
CviAII	CATG	4 cut(s)	200, 637, 775, 910
CviQI	GTAC	2 cut(s)	650, 1043
DdeI	CTNAG	7 cut(s)	483, 573, 721, 786, 836, 857, 962
DpnI	GATC	4 cut(s)	223, 744, 1250, 1284
DpnII	GATC	4 cut(s)	221, 742, 1248, 1282
DriI	GACNNNNNGTC	1 cut(s)	637
EaeI	YGGCCR	2 cut(s)	255, 902
Eam1104I	CTCTTC	3 cut(s)	40, 878, 1314
Eam1105I	GACNNNNNGTC	1 cut(s)	637
EarI	CTCTTC	3 cut(s)	40, 878, 1314
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	6 cut(s)	199, 421, 590, 774, 1071, 1314
Eco31I	GGTCTC	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	1180
Eco57I	CTGAAG	1 cut(s)	902
Eco81I	CCTNAGG	1 cut(s)	857
Eco91I	GGTNACC	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	587
EcoO65I	GGTNACC	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	56
EcoRII	CCWGG	3 cut(s)	28, 217, 388
EcoRV	GATATC	1 cut(s)	1180
EcoT14I	CCWWGG	6 cut(s)	199, 421, 590, 774, 1071, 1314
ErhI	CCWWGG	6 cut(s)	199, 421, 590, 774, 1071, 1314
FaeI	CATG	4 cut(s)	203, 640, 778, 913
FatI	CATG	4 cut(s)	199, 636, 774, 909
FauI	CCCGC	2 cut(s)	150, 297
FauNDI	CATATG	1 cut(s)	1000
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	5 cut(s)	130, 492, 656, 896, 1276
FokI	GGATG	2 cut(s)	119, 1017
Fsp4HI	GCNGC	5 cut(s)	130, 492, 656, 896, 1276
FspBI	CTAG	3 cut(s)	287, 591, 918
GlaI	GCGC	2 cut(s)	1132, 1244
GluI	GCNGC	5 cut(s)	130, 492, 656, 896, 1276
GsaI	CCCAGC	1 cut(s)	470
GsuI	CTGGAG	1 cut(s)	644
HaeIII	GGCC	5 cut(s)	123, 197, 257, 589, 904
HapII	CCGG	3 cut(s)	212, 318, 1034
HhaI	GCGC	2 cut(s)	1133, 1245
Hin1II	CATG	4 cut(s)	203, 640, 778, 913
Hin6I	GCGC	2 cut(s)	1131, 1243
HinP1I	GCGC	2 cut(s)	1131, 1243
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	4 cut(s)	152, 577, 1205, 1261
HpaII	CCGG	3 cut(s)	212, 318, 1034
HphI	GGTGA	9 cut(s)	34, 44, 78, 91, 147, 377, 404, 779, 1072
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	7 cut(s)	55, 404, 486, 837, 882, 1051, 1120
Hpy188III	TCNNGA	8 cut(s)	149, 212, 335, 859, 918, 1034, 1175, 1265
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	4 cut(s)	559, 597, 683, 784
HpyCH4III	ACNGT	5 cut(s)	103, 755, 1025, 1234, 1272
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	7 cut(s)	129, 203, 263, 488, 556, 737, 901
HpyF3I	CTNAG	7 cut(s)	483, 573, 721, 786, 836, 857, 962
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	4 cut(s)	203, 640, 778, 913
HspAI	GCGC	2 cut(s)	1131, 1243
Kpn2I	TCCGGA	2 cut(s)	211, 1033
Kzo9I	GATC	4 cut(s)	221, 742, 1248, 1282
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	4 cut(s)	214, 663, 1240, 1310
Lsp1109I	GCAGC	3 cut(s)	503, 667, 907
LweI	GCATC	3 cut(s)	141, 418, 519
MaeI	CTAG	3 cut(s)	287, 591, 918
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	7 cut(s)	22, 84, 181, 188, 241, 392, 778
MalI	GATC	4 cut(s)	223, 744, 1250, 1284
MboI	GATC	4 cut(s)	221, 742, 1248, 1282
MboII	GAAGA	6 cut(s)	57, 657, 881, 895, 982, 1292
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	561
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	4 cut(s)	56, 552, 682, 973
MluNI	TGGCCA	1 cut(s)	257
MlyI	GAGTC	2 cut(s)	146, 1199
MmeI	TCCRAC	1 cut(s)	500
Mox20I	TGGCCA	1 cut(s)	257
MroI	TCCGGA	2 cut(s)	211, 1033
MroXI	GAANNNNTTC	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	1 cut(s)	750
MslI	CAYNNNNRTG	1 cut(s)	390
Msp20I	TGGCCA	1 cut(s)	257
MspI	CCGG	3 cut(s)	212, 318, 1034
MspR9I	CCNGG	3 cut(s)	30, 219, 390
MvaI	CCWGG	3 cut(s)	30, 219, 390
MvnI	CGCG	1 cut(s)	1278
MwoI	GCNNNNNNNGC	7 cut(s)	129, 203, 263, 488, 556, 737, 901
NcoI	CCATGG	2 cut(s)	199, 774
NdeI	CATATG	1 cut(s)	1000
NdeII	GATC	4 cut(s)	221, 742, 1248, 1282
NlaIII	CATG	4 cut(s)	203, 640, 778, 913
NlaIV	GGNNCC	5 cut(s)	76, 216, 292, 588, 1312
NmeAIII	GCCGAG	1 cut(s)	1117
NmuCI	GTSAC	4 cut(s)	22, 84, 188, 392
OliI	CACNNNNGTG	1 cut(s)	390
PaqCI	CACCTGC	1 cut(s)	485
PciSI	GCTCTTC	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	577, 1261
PflFI	GACNNNGTC	1 cut(s)	398
PinAI	ACCGGT	1 cut(s)	317
PkrI	GCNGC	5 cut(s)	131, 493, 657, 897, 1277
PleI	GAGTC	2 cut(s)	146, 1199
PpsI	GAGTC	2 cut(s)	146, 1199
Ppu21I	YACGTR	1 cut(s)	82
PsiI	TTATAA	1 cut(s)	945
Psp6I	CCWGG	3 cut(s)	28, 217, 388
PspEI	GGTNACC	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	466
PspGI	CCWGG	3 cut(s)	28, 217, 388
PspN4I	GGNNCC	5 cut(s)	76, 216, 292, 588, 1312
PspPI	GGNCC	2 cut(s)	196, 587
PstI	CTGCAG	1 cut(s)	657
PsuI	RGATCY	1 cut(s)	221
PsyI	GACNNNGTC	1 cut(s)	398
RsaI	GTAC	2 cut(s)	651, 1044
RsaNI	GTAC	2 cut(s)	650, 1043
RseI	CAYNNNNRTG	1 cut(s)	390
SapI	GCTCTTC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	5 cut(s)	130, 492, 656, 896, 1276
Sau3AI	GATC	4 cut(s)	221, 742, 1248, 1282
Sau96I	GGNCC	2 cut(s)	196, 587
ScaI	AGTACT	1 cut(s)	651
SchI	GAGTC	2 cut(s)	146, 1199
ScrFI	CCNGG	3 cut(s)	30, 219, 390
SduI	GDGCHC	1 cut(s)	561
SfaNI	GCATC	3 cut(s)	141, 418, 519
SfcI	CTRYAG	1 cut(s)	653
SmiMI	CAYNNNNRTG	1 cut(s)	390
Sse9I	AATT	4 cut(s)	56, 552, 682, 973
SsiI	CCGC	7 cut(s)	127, 130, 143, 304, 1007, 1058, 1276
SspMI	CTAG	3 cut(s)	287, 591, 918
StyD4I	CCNGG	3 cut(s)	28, 217, 388
StyI	CCWWGG	6 cut(s)	199, 421, 590, 774, 1071, 1314
TaaI	ACNGT	5 cut(s)	103, 755, 1025, 1234, 1272
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	1102
TasI	AATT	4 cut(s)	56, 552, 682, 973
TatI	WGTACW	1 cut(s)	649
TauI	GCSGC	2 cut(s)	132, 1278
TfiI	GAWTC	2 cut(s)	577, 1261
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	3 cut(s)	715, 729, 1277
TseFI	GTSAC	4 cut(s)	22, 84, 188, 392
TseI	GCWGC	3 cut(s)	491, 655, 895
Tsp45I	GTSAC	4 cut(s)	22, 84, 188, 392
TspDTI	ATGAA	2 cut(s)	926, 983
TspGWI	ACGGA	1 cut(s)	924
TspRI	CASTG	3 cut(s)	715, 729, 1277
Tth111I	GACNNNGTC	1 cut(s)	398
XapI	RAATTY	1 cut(s)	56
XbaI	TCTAGA	1 cut(s)	917
XmaJI	CCTAGG	1 cut(s)	590
XmiI	GTMKAC	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	3 cut(s)	287, 591, 918
ZrmI	AGTACT	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.