Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002897

Physical Location & Seq

Genomic Coordinates Forward (+)

6169098 .. 6173312

Gene Structure 4215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G006560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1809 bp

ATGGGCGGCCACGATCTGGAAATGGAGAAAGCTCGACTCTTAAGTTTGGCTCTTAATTTTGGGTTCGATGAAGAATCGGCCAACAAGTGCTTGGATCGTATGGTTGATCTCTACGGTGAAGATGGCCTAGATTTTATTACTGTGGAGCATTGCGGTGATGAGTTTCTTTCACAACTAGCTGAATCCGTTCAAGACACTGAAGAATGGGATGATTTACAAGCAATGGAGTCTGAAGCTTGTGGAGCATTGAATAACATGTTTGGAAATGGTAATGAAGCAGGTAACTATGATAATGCTAGTGCCAAAACCAACATGCCAGAAGATTCACTTGAACGTCAAAAGTACCCAAATTTGTTGGTGCTGGATTCGAGTGATAGTGAAGACTTTGAATTAAGAACTCCATTAAGAAGAACAGTTGGATCCTTTTCTTCTTCATGTCCTGGTTGTGAAAGTACCATTAGTCGAGACAGAGTTCCATCAATTTCTAGTAAGAAGCAGTGTGTTCGAACAGCAAAGGATGAATTTAAGTCTCTTACTTATGAAGAACTACAGTTGCTGGATGATGCTGAGCTGGCCAATGTTGTAATATTTGGTAATAGGACCTTTCGACCATTGCAGCATCAGGCTTGCAAAGCAGCCATGGCAAAGCAAGATTGCTTTATCCTAATGCCTACTGGAGGGGGTAAAAGCTTATGTTACCAGCTTCCTGCAACCCTGAAACCAGGTGTGACAATAGTTGTCTCTCCACTGCTTTCTCTTATTCAGGATCAGATAGTAACTCTGAACCTCAAGTTTGGTATACCAGCAACTTTTTTGAATTCTCAGCAAACTGCTTCCCAAGCAGCAGCTGTCCTCCAAGAGCTGAGGAAAGATAAGCCATCATGCAAGCTTCTGTATGTGACTCCTGAGAGAATTGCTGGAAGCTCATGTTTCCTTGAGGTTCTAGAATGCTTGCATTTGAAGGGGATGCTAGCAGGATTTGTTGTTGATGAAGCACACTGCGTAAGCCAATGGGGACATGATTTTCGTCCAGATTACAAGGGATTAGGTTGTCTTAAGCAGAAGTTCCGAGATGTTCCGGTGATGGCATTGACTGCTACTGCAACCCATCCAGTTCGTAAGGACATACTAAAAATTTTGAAAATTCCCCATGCTCTTGTCCTTGAAAGAAGCTTTGACAGACCCAATTTGAAATATGAAGTGATTCGTAAGGCGAAGGAAGCACTAAAGCAGCTTGGGCAACTATTGATGAGCCGTTTTCAGAACCAGTGTGGAATTATATACTGCCTCTCCAAAAGTGAATCCGTTGAGGTTTCAAAATTTCTGAATGAGAAATTTAAGATTAAGACAGCGCATTACCATGCCGGGATGGCAGCTCGCCAAAGAGTTGCTGTCCAAAAGAAATGGTACACAGGAGAGATCCAAATTGTATGTGCTACAATTGCTTTTGGGATGGGAATAGACAAGCCGGATGTTCGTTTTGTTATACACAACAGTCTATCCAAATCCATTGAAAGCTACTATCAAGAATCTGGAAGGGCTGGCAGAGATGATCTTCCTTCAGCATGCATTGTCCTGTACCAGAAGAAGGATTTTAGTCGGGTTGTATGTATGTTGCGAAACGGACAAGGATTTAAAAGTCAAAGCTTCAAGGCAGCTATGGCTCAAGCTCAGAAAATGCAGGAGTATTGTGAATTAAAGGCTCAGTGTCGGAGACAAATGTTGCTCAAACACTTCGGAGAATCTTTTGATGAAAACGCCTGCAAAAATGGATCTAATCCTTGTGATAACTGTCTCAAGACTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031668 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042221 GO:0042623 GO:0042631 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

602

Amino Acids

67.26

Weight (kDa)

6.85

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	203 - 372	2.3e-23	DEAD/DEAH box helicase
Helicase_C	PF00271	409 - 516	3.8e-19	Helicase conserved C-terminal domain
RecQ_Zn_bind	PF16124	530 - 599	1.6e-14	RecQ zinc-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05740 AT3G05740
fragaria_vesca	FvH4_6g07200 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210
malus_domestica	MD04G1195500.v1.1 MD12G1207600.v1.1 MD12G1207700.v1.1 MD12G1207800.v1.1
prunus_persica	Prupe.6G315200_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1
pyrus_communis	pycom04g17270 pycom12g19520 pycom12g19530
rosa_chinensis	RchiOBHm_Chr3g0456831 RchiOBHm_Chr3g0456841
rosa_laevigata	RLG00000025275
rosa_multiflora	Rmu_co8434835.1_g000001 Rmu_sc0000133.1_g000020
rosa_roxburghii	Rroxscaffold_6G00422450 Rroxscaffold_6G00422460
rosa_rugosa	Rorug03G0016100 Rorug03G0016200 Rorug03G0016300.1
rosa_samantha	Rh3AG076400 Rh3AG076600 Rh3BG078200 Rh3BG078400 Rh3CG078000 Rh3CG078200 Rh3DG080100 Rh3DG080200
rosa_wichuraiana	Rw3G006560 Rw3G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	269
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	799
AciI	CCGC	2 cut(s)	6, 153
AclWI	GGATC	6 cut(s)	102, 414, 427, 774, 1414, 1780
AcoI	YGGCCR	3 cut(s)	7, 78, 573
AcsI	RAATTY	7 cut(s)	349, 521, 817, 1134, 1143, 1319, 1334
AcuI	CTGAAG	3 cut(s)	219, 252, 1545
AfaI	GTAC	4 cut(s)	344, 454, 1409, 1580
AfiI	CCNNNNNNNGG	3 cut(s)	16, 677, 1588
AflII	CTTAAG	2 cut(s)	40, 1055
AflIII	ACRYGT	1 cut(s)	255
AjnI	CCWGG	2 cut(s)	439, 721
Alw26I	GTCTC	5 cut(s)	459, 534, 745, 1708, 1799
AlwI	GGATC	6 cut(s)	102, 414, 427, 774, 1414, 1780
AlwNI	CAGNNNCTG	2 cut(s)	556, 848
AoxI	GGCC	4 cut(s)	7, 78, 124, 573
ApeKI	GCWGC	7 cut(s)	616, 635, 842, 845, 1231, 1373, 1655
ApoI	RAATTY	7 cut(s)	349, 521, 817, 1134, 1143, 1319, 1334
ArsI	GACNNNNNNTTYG	2 cut(s)	1008, 1040
Asp700I	GAANNNNTTC	2 cut(s)	186, 1203
AspLEI	GCGC	1 cut(s)	1354
AspS9I	GGNCC	1 cut(s)	600
AsuC2I	CCSGG	1 cut(s)	1366
AsuHPI	GGTGA	3 cut(s)	128, 167, 1093
AsuII	TTCGAA	1 cut(s)	505
AsuNHI	GCTAGC	1 cut(s)	970
AvaII	GGWCC	1 cut(s)	600
BalI	TGGCCA	1 cut(s)	575
BamHI	GGATCC	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	387
BbvCI	CCTCAGC	1 cut(s)	863
BbvI	GCAGC	7 cut(s)	628, 647, 854, 857, 1243, 1385, 1667
BccI	CCATC	7 cut(s)	116, 484, 886, 1078, 1116, 1363, 1447
BceAI	ACGGC	1 cut(s)	1239
BcgI	CGANNNNNNTGC	2 cut(s)	485, 519
BciT130I	CCWGG	2 cut(s)	441, 723
BcnI	CCSGG	1 cut(s)	1366
BcoDI	GTCTC	5 cut(s)	459, 534, 745, 1708, 1799
BfaI	CTAG	7 cut(s)	128, 176, 297, 486, 944, 971, 1807
BfmI	CTRYAG	1 cut(s)	548
BfrI	CTTAAG	2 cut(s)	40, 1055
BfuAI	ACCTGC	1 cut(s)	269
BglI	GCCNNNNNGGC	1 cut(s)	1370
BisI	GCNGC	8 cut(s)	7, 617, 636, 843, 846, 1232, 1374, 1656
BlpI	GCTNAGC	1 cut(s)	567
BlsI	GCNGC	8 cut(s)	8, 618, 637, 844, 847, 1233, 1375, 1657
Bme1390I	CCNGG	3 cut(s)	441, 723, 1366
Bme18I	GGWCC	1 cut(s)	600
BmgT120I	GGNCC	1 cut(s)	600
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	3 cut(s)	441, 723, 1366
BmsI	GCATC	3 cut(s)	553, 628, 957
BmtI	GCTAGC	1 cut(s)	974
BpiI	GAAGAC	1 cut(s)	387
BpmI	CTGGAG	1 cut(s)	696
Bpu10I	CCTNAGC	1 cut(s)	863
Bpu1102I	GCTNAGC	1 cut(s)	567
Bpu14I	TTCGAA	1 cut(s)	505
BpuEI	CTTGAG	4 cut(s)	773, 956, 1650, 1781
BpuMI	CCSGG	1 cut(s)	1366
BsaJI	CCNNGG	1 cut(s)	639
BsaWI	WCCGGW	1 cut(s)	1078
BsaXI	ACNNNNNCTCC	2 cut(s)	1274, 1304
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 677, 1588
Bse1I	ACTGG	3 cut(s)	679, 1112, 1267
Bse3DI	GCAATG	3 cut(s)	148, 228, 611
BseBI	CCWGG	2 cut(s)	441, 723
BseDI	CCNNGG	1 cut(s)	639
BseGI	GGATG	8 cut(s)	214, 523, 565, 972, 1108, 1374, 1458, 1477
BseLI	CCNNNNNNNGG	3 cut(s)	16, 677, 1588
BseMI	GCAATG	3 cut(s)	148, 228, 611
BseMII	CTCAG	6 cut(s)	558, 836, 854, 897, 1685, 1718
BseNI	ACTGG	3 cut(s)	679, 1112, 1267
BseXI	GCAGC	7 cut(s)	628, 647, 854, 857, 1243, 1385, 1667
BshFI	GGCC	4 cut(s)	9, 80, 126, 575
BsiSI	CCGG	3 cut(s)	1079, 1365, 1469
BslFI	GGGAC	1 cut(s)	1029
BslI	CCNNNNNNNGG	3 cut(s)	16, 677, 1588
BsmAI	GTCTC	5 cut(s)	459, 534, 745, 1708, 1799
BsmFI	GGGAC	1 cut(s)	1029
BsmI	GAATGC	1 cut(s)	953
BsnI	GGCC	4 cut(s)	9, 80, 126, 575
Bsp119I	TTCGAA	1 cut(s)	505
Bsp143I	GATC	8 cut(s)	13, 94, 106, 419, 766, 1419, 1552, 1772
Bsp1720I	GCTNAGC	1 cut(s)	567
Bsp19I	CCATGG	1 cut(s)	639
BspACI	CCGC	2 cut(s)	6, 153
BspANI	GGCC	4 cut(s)	9, 80, 126, 575
BspCNI	CTCAG	6 cut(s)	559, 835, 855, 898, 1684, 1717
BspLI	GGNNCC	1 cut(s)	421
BspMI	ACCTGC	1 cut(s)	269
BspOI	GCTAGC	1 cut(s)	974
BspPI	GGATC	6 cut(s)	102, 414, 427, 774, 1414, 1780
BspT104I	TTCGAA	1 cut(s)	505
BspTI	CTTAAG	2 cut(s)	40, 1055
BsrDI	GCAATG	3 cut(s)	148, 228, 611
BsrI	ACTGG	3 cut(s)	679, 1112, 1267
BssECI	CCNNGG	1 cut(s)	639
BssMI	GATC	8 cut(s)	13, 94, 106, 419, 766, 1419, 1552, 1772
BssNAI	GTATAC	1 cut(s)	800
BssT1I	CCWWGG	1 cut(s)	639
Bst1107I	GTATAC	1 cut(s)	800
Bst2UI	CCWGG	2 cut(s)	441, 723
Bst4CI	ACNGT	6 cut(s)	116, 142, 415, 552, 1496, 1793
BstAFI	CTTAAG	2 cut(s)	40, 1055
BstAPI	GCANNNNNTGC	1 cut(s)	1094
BstBI	TTCGAA	1 cut(s)	505
BstC8I	GCNNGC	9 cut(s)	573, 628, 887, 953, 972, 1378, 1543, 1567, 1762
BstDEI	CTNAG	6 cut(s)	567, 822, 863, 906, 1671, 1704
BstDSI	CCRYGG	1 cut(s)	639
BstENI	CCTNNNNNAGG	1 cut(s)	675
BstF5I	GGATG	8 cut(s)	214, 523, 565, 972, 1108, 1374, 1458, 1477
BstHHI	GCGC	1 cut(s)	1354
BstKTI	GATC	8 cut(s)	16, 97, 109, 422, 769, 1422, 1555, 1775
BstMAI	GTCTC	5 cut(s)	459, 534, 745, 1708, 1799
BstMBI	GATC	8 cut(s)	13, 94, 106, 419, 766, 1419, 1552, 1772
BstNI	CCWGG	2 cut(s)	441, 723
BstNSI	RCATGY	3 cut(s)	259, 316, 1569
BstSCI	CCNGG	3 cut(s)	439, 721, 1364
BstSFI	CTRYAG	1 cut(s)	548
BstV1I	GCAGC	7 cut(s)	628, 647, 854, 857, 1243, 1385, 1667
BstV2I	GAAGAC	1 cut(s)	387
BstX2I	RGATCY	3 cut(s)	419, 1419, 1772
BstYI	RGATCY	3 cut(s)	419, 1419, 1772
BstZ17I	GTATAC	1 cut(s)	800
BsuRI	GGCC	4 cut(s)	9, 80, 126, 575
BtgI	CCRYGG	1 cut(s)	639
BtsCI	GGATG	8 cut(s)	214, 523, 565, 972, 1108, 1374, 1458, 1477
BtsI	GCAGTG	3 cut(s)	503, 746, 997
BtsIMutI	CAGTG	6 cut(s)	195, 503, 746, 997, 1274, 1712
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	9 cut(s)	573, 628, 887, 953, 972, 1378, 1543, 1567, 1762
CaiI	CAGNNNCTG	2 cut(s)	556, 848
CfoI	GCGC	1 cut(s)	1354
Cfr13I	GGNCC	1 cut(s)	600
CsiI	ACCWGGT	1 cut(s)	721
Csp6I	GTAC	4 cut(s)	343, 453, 1408, 1579
CviQI	GTAC	4 cut(s)	343, 453, 1408, 1579
DdeI	CTNAG	6 cut(s)	567, 822, 863, 906, 1671, 1704
DpnI	GATC	8 cut(s)	15, 96, 108, 421, 768, 1421, 1554, 1774
DpnII	GATC	8 cut(s)	13, 94, 106, 419, 766, 1419, 1552, 1772
DraI	TTTAAA	1 cut(s)	1636
EaeI	YGGCCR	3 cut(s)	7, 78, 573
Eco130I	CCWWGG	1 cut(s)	639
Eco47I	GGWCC	1 cut(s)	600
Eco57I	CTGAAG	3 cut(s)	219, 252, 1545
EcoNI	CCTNNNNNAGG	1 cut(s)	675
EcoO109I	RGGNCCY	1 cut(s)	600
EcoRI	GAATTC	1 cut(s)	817
EcoRII	CCWGG	2 cut(s)	439, 721
EcoT14I	CCWWGG	1 cut(s)	639
EcoT22I	ATGCAT	1 cut(s)	1571
ErhI	CCWWGG	1 cut(s)	639
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FaqI	GGGAC	1 cut(s)	1029
FblI	GTMKAC	1 cut(s)	799
Fnu4HI	GCNGC	8 cut(s)	7, 617, 636, 843, 846, 1232, 1374, 1656
FokI	GGATG	8 cut(s)	221, 530, 572, 979, 1095, 1381, 1465, 1484
Fsp4HI	GCNGC	8 cut(s)	7, 617, 636, 843, 846, 1232, 1374, 1656
FspBI	CTAG	7 cut(s)	128, 176, 297, 486, 944, 971, 1807
GlaI	GCGC	1 cut(s)	1353
GluI	GCNGC	8 cut(s)	7, 617, 636, 843, 846, 1232, 1374, 1656
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	4 cut(s)	9, 80, 126, 575
HapII	CCGG	3 cut(s)	1079, 1365, 1469
HhaI	GCGC	1 cut(s)	1354
Hin6I	GCGC	1 cut(s)	1352
HinP1I	GCGC	1 cut(s)	1352
HindIII	AAGCTT	5 cut(s)	234, 688, 887, 1171, 1645
HpaII	CCGG	3 cut(s)	1079, 1365, 1469
HphI	GGTGA	3 cut(s)	128, 167, 1093
Hpy166II	GTNNAC	2 cut(s)	800, 1410
Hpy188I	TCNGA	9 cut(s)	232, 771, 783, 1070, 1263, 1326, 1674, 1713, 1739
Hpy8I	GTNNAC	2 cut(s)	800, 1410
HpyAV	CCTTC	5 cut(s)	955, 1210, 1530, 1569, 1582
HpyCH4III	ACNGT	6 cut(s)	116, 142, 415, 552, 1496, 1793
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	9 cut(s)	616, 630, 710, 885, 955, 1103, 1569, 1681, 1764
HpyF3I	CTNAG	6 cut(s)	567, 822, 863, 906, 1671, 1704
HpySE526I	ACGT	1 cut(s)	334
HspAI	GCGC	1 cut(s)	1352
Kzo9I	GATC	8 cut(s)	13, 94, 106, 419, 766, 1419, 1552, 1772
LmnI	GCTCC	2 cut(s)	145, 242
Lsp1109I	GCAGC	7 cut(s)	628, 647, 854, 857, 1243, 1385, 1667
LweI	GCATC	3 cut(s)	553, 628, 957
MabI	ACCWGGT	1 cut(s)	721
MaeI	CTAG	7 cut(s)	128, 176, 297, 486, 944, 971, 1807
MaeII	ACGT	1 cut(s)	334
MaeIII	GTNAC	5 cut(s)	281, 695, 727, 775, 898
MalI	GATC	8 cut(s)	15, 96, 108, 421, 768, 1421, 1554, 1774
MboI	GATC	8 cut(s)	13, 94, 106, 419, 766, 1419, 1552, 1772
MfeI	CAATTG	1 cut(s)	1440
MflI	RGATCY	3 cut(s)	419, 1419, 1772
MlsI	TGGCCA	1 cut(s)	575
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	3 cut(s)	30, 236, 895
MmeI	TCCRAC	2 cut(s)	397, 1691
MnlI	CCTC	7 cut(s)	671, 797, 858, 863, 931, 1298, 1303
Mox20I	TGGCCA	1 cut(s)	575
Mph1103I	ATGCAT	1 cut(s)	1571
MroXI	GAANNNNTTC	2 cut(s)	186, 1203
MscI	TGGCCA	1 cut(s)	575
MslI	CAYNNNNRTG	2 cut(s)	153, 1359
Msp20I	TGGCCA	1 cut(s)	575
MspA1I	CMGCKG	1 cut(s)	848
MspCI	CTTAAG	2 cut(s)	40, 1055
MspI	CCGG	3 cut(s)	1079, 1365, 1469
MspR9I	CCNGG	3 cut(s)	441, 723, 1366
MunI	CAATTG	1 cut(s)	1440
Mva1269I	GAATGC	1 cut(s)	953
MvaI	CCWGG	2 cut(s)	441, 723
NciI	CCSGG	1 cut(s)	1366
NcoI	CCATGG	1 cut(s)	639
NdeII	GATC	8 cut(s)	13, 94, 106, 419, 766, 1419, 1552, 1772
NheI	GCTAGC	1 cut(s)	970
NlaIV	GGNNCC	1 cut(s)	421
NmuCI	GTSAC	2 cut(s)	727, 898
NsiI	ATGCAT	1 cut(s)	1571
NspI	RCATGY	3 cut(s)	259, 316, 1569
NspV	TTCGAA	1 cut(s)	505
PaeI	GCATGC	1 cut(s)	1569
PciI	ACATGT	1 cut(s)	255
PctI	GAATGC	1 cut(s)	953
PdmI	GAANNNNTTC	2 cut(s)	186, 1203
PfeI	GAWTC	8 cut(s)	74, 182, 323, 365, 1204, 1301, 1529, 1742
PflMI	CCANNNNNTGG	1 cut(s)	16
PkrI	GCNGC	8 cut(s)	8, 618, 637, 844, 847, 1233, 1375, 1657
PleI	GAGTC	3 cut(s)	30, 235, 895
PpsI	GAGTC	3 cut(s)	30, 235, 895
PpuMI	RGGWCCY	1 cut(s)	600
PscI	ACATGT	1 cut(s)	255
Psp5II	RGGWCCY	1 cut(s)	600
Psp6I	CCWGG	2 cut(s)	439, 721
PspGI	CCWGG	2 cut(s)	439, 721
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	1 cut(s)	600
PspPPI	RGGWCCY	1 cut(s)	600
PstNI	CAGNNNCTG	2 cut(s)	556, 848
PsuI	RGATCY	3 cut(s)	419, 1419, 1772
PvuII	CAGCTG	1 cut(s)	848
RsaI	GTAC	4 cut(s)	344, 454, 1409, 1580
RsaNI	GTAC	4 cut(s)	343, 453, 1408, 1579
RseI	CAYNNNNRTG	2 cut(s)	153, 1359
SatI	GCNGC	8 cut(s)	7, 617, 636, 843, 846, 1232, 1374, 1656
Sau3AI	GATC	8 cut(s)	13, 94, 106, 419, 766, 1419, 1552, 1772
Sau96I	GGNCC	1 cut(s)	600
SchI	GAGTC	3 cut(s)	30, 236, 895
ScrFI	CCNGG	3 cut(s)	441, 723, 1366
SexAI	ACCWGGT	1 cut(s)	721
SfaNI	GCATC	3 cut(s)	553, 628, 957
SfcI	CTRYAG	1 cut(s)	548
SfuI	TTCGAA	1 cut(s)	505
SinI	GGWCC	1 cut(s)	600
SmiMI	CAYNNNNRTG	2 cut(s)	153, 1359
SmlI	CTYRAG	6 cut(s)	40, 788, 935, 1055, 1665, 1796
SmoI	CTYRAG	6 cut(s)	40, 788, 935, 1055, 1665, 1796
SphI	GCATGC	1 cut(s)	1569
SsiI	CCGC	2 cut(s)	6, 153
SspI	AATATT	1 cut(s)	588
SspMI	CTAG	7 cut(s)	128, 176, 297, 486, 944, 971, 1807
StyD4I	CCNGG	3 cut(s)	439, 721, 1364
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	6 cut(s)	116, 142, 415, 552, 1496, 1793
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	6 cut(s)	34, 66, 368, 463, 505, 607
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	8 cut(s)	74, 182, 323, 365, 1204, 1301, 1529, 1742
TscAI	CASTG	6 cut(s)	202, 503, 753, 1004, 1274, 1712
TseFI	GTSAC	2 cut(s)	727, 898
TseI	GCWGC	7 cut(s)	616, 635, 842, 845, 1231, 1373, 1655
Tsp45I	GTSAC	2 cut(s)	727, 898
TspDTI	ATGAA	8 cut(s)	84, 288, 423, 534, 555, 1005, 1212, 1767
TspGWI	ACGGA	3 cut(s)	175, 1294, 1638
TspRI	CASTG	6 cut(s)	202, 503, 753, 1004, 1274, 1712
Van91I	CCANNNNNTGG	1 cut(s)	16
Vha464I	CTTAAG	2 cut(s)	40, 1055
VpaK11BI	GGWCC	1 cut(s)	600
XagI	CCTNNNNNAGG	1 cut(s)	675
XapI	RAATTY	7 cut(s)	349, 521, 817, 1134, 1143, 1319, 1334
XbaI	TCTAGA	1 cut(s)	943
XceI	RCATGY	3 cut(s)	259, 316, 1569
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	799
XmnI	GAANNNNTTC	2 cut(s)	186, 1203
XspI	CTAG	7 cut(s)	128, 176, 297, 486, 944, 971, 1807
Zsp2I	ATGCAT	1 cut(s)	1571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.