Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002897

Physical Location & Seq

Genomic Coordinates Reverse (-)

1294783 .. 1295545

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0016200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCAACAACATCAAACTCTGCAGTTTCAACATTTCCTAATCTAAACATCACAGTGGAAAGCAATCCCTCGGATTCACGCTTATCTGAATTGGCTATTAACTCATGGCCAAAATGGGGATGTGCACCAGGGAAGTACACACTTAAGTTTGAGGCAGCAGAGACATGTTATCTGGTAAGAGGCAGAGTGAAGGTGTATCCTAAAGGATGCTCATCATCATCTTCGTCCGAGTTTGTAGAGTTTGGAGCAGGAGACCTTGTAACCATTCCCAAAGGACTCAGGTGCATATGGGATGTATCAGTTGCCATTGATAAACACTACAAGTTTGAGTCCTCTTCATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031668 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042221 GO:0042623 GO:0042631 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

114

Amino Acids

12.39

Weight (kDa)

7.63

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_3	PF05899	29 - 107	3.9e-24	EutQ-like cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05740 AT3G05740
fragaria_vesca	FvH4_6g07200 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210
malus_domestica	MD04G1195500.v1.1 MD12G1207600.v1.1 MD12G1207700.v1.1 MD12G1207800.v1.1
prunus_persica	Prupe.6G315200_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1
pyrus_communis	pycom04g17270 pycom12g19520 pycom12g19530
rosa_chinensis	RchiOBHm_Chr3g0456831 RchiOBHm_Chr3g0456841
rosa_laevigata	RLG00000025275
rosa_multiflora	Rmu_co8434835.1_g000001 Rmu_sc0000133.1_g000020
rosa_roxburghii	Rroxscaffold_6G00422450 Rroxscaffold_6G00422460
rosa_rugosa	Rorug03G0016100 Rorug03G0016200 Rorug03G0016300.1
rosa_samantha	Rh3AG076400 Rh3AG076600 Rh3BG078200 Rh3BG078400 Rh3CG078000 Rh3CG078200 Rh3DG080100 Rh3DG080200
rosa_wichuraiana	Rw3G006560 Rw3G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	107
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	116
AflII	CTTAAG	1 cut(s)	143
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	30
AjnI	CCWGG	1 cut(s)	127
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	2 cut(s)	155, 246
Alw44I	GTGCAC	1 cut(s)	123
AoxI	GGCC	1 cut(s)	107
ApaLI	GTGCAC	1 cut(s)	123
ApeKI	GCWGC	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	129
BciVI	GTATCC	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	155, 246
BfaI	CTAG	1 cut(s)	343
BfmI	CTRYAG	1 cut(s)	21
BfrI	CTTAAG	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	207
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	69, 128
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse8I	GATNNNNATC	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	69, 128
BseGI	GGATG	4 cut(s)	125, 212, 298, 338
BseJI	GATNNNNATC	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	292
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	167
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	2 cut(s)	155, 246
BsnI	GGCC	1 cut(s)	109
Bso31I	GGTCTC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	127
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	1 cut(s)	291
BspMAI	CTGCAG	1 cut(s)	25
BspTI	CTTAAG	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	69, 128
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	340
BstAFI	CTTAAG	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	278
BstF5I	GGATG	4 cut(s)	125, 212, 298, 338
BstMAI	GTCTC	2 cut(s)	155, 246
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	167
BsuI	GTATCC	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	109
BtsCI	GGATG	4 cut(s)	125, 212, 298, 338
BtsIMutI	CAGTG	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	2 cut(s)	105, 165
CviJI	RGCY	2 cut(s)	95, 109
CviKI_1	RGCY	2 cut(s)	95, 109
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	278
EaeI	YGGCCR	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
Eco31I	GGTCTC	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	127
FaeI	CATG	2 cut(s)	108, 168
FaiI	YATR	4 cut(s)	106, 166, 287, 289
FatI	CATG	2 cut(s)	104, 164
FauNDI	CATATG	1 cut(s)	287
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	4 cut(s)	132, 219, 305, 325
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	343
GluI	GCNGC	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	109
Hin1II	CATG	2 cut(s)	108, 168
HinfI	GANTC	3 cut(s)	74, 276, 329
Hpy166II	GTNNAC	2 cut(s)	125, 138
Hpy188I	TCNGA	3 cut(s)	73, 88, 229
Hpy8I	GTNNAC	2 cut(s)	125, 138
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	3 cut(s)	23, 125, 285
HpyF3I	CTNAG	1 cut(s)	278
Hsp92II	CATG	2 cut(s)	108, 168
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	5 cut(s)	114, 141, 158, 234, 265
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	1 cut(s)	343
MaeIII	GTNAC	1 cut(s)	259
MboII	GAAGA	2 cut(s)	213, 327
MhlI	GDGCHC	1 cut(s)	127
MlsI	TGGCCA	1 cut(s)	109
MluCI	AATT	1 cut(s)	89
MluNI	TGGCCA	1 cut(s)	109
MlyI	GAGTC	2 cut(s)	270, 338
MnlI	CCTC	4 cut(s)	79, 145, 173, 343
Mox20I	TGGCCA	1 cut(s)	109
MscI	TGGCCA	1 cut(s)	109
MseI	TTAA	2 cut(s)	99, 144
MslI	CAYNNNNRTG	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	109
MspCI	CTTAAG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
NdeI	CATATG	1 cut(s)	287
NlaIII	CATG	2 cut(s)	108, 168
NspI	RCATGY	1 cut(s)	168
PciI	ACATGT	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	2 cut(s)	270, 337
PpsI	GAGTC	2 cut(s)	270, 337
PscI	ACATGT	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	99, 144
SatI	GCNGC	1 cut(s)	156
SchI	GAGTC	2 cut(s)	270, 338
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	3 cut(s)	195, 258, 284
SfaNI	GCATC	1 cut(s)	197
SfcI	CTRYAG	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	1 cut(s)	89
SspMI	CTAG	1 cut(s)	343
StyD4I	CCNGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	55
TasI	AATT	1 cut(s)	89
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	99, 144
Tru9I	TTAA	2 cut(s)	99, 144
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	327
TspRI	CASTG	1 cut(s)	60
Vha464I	CTTAAG	1 cut(s)	143
VneI	GTGCAC	1 cut(s)	123
XceI	RCATGY	1 cut(s)	168
XspI	CTAG	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.