Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002897

Physical Location & Seq

Genomic Coordinates Reverse (-)

28750343 .. 28751676

Gene Structure 1334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1207700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGCTTGCATTAGATTTTAAAAGCTGTTATGTATCGAGCTTAGATAGTGCTTGGATTAAATCACAGGGGCAGCTAGCAGGATTTGTTGTGGACGAAGCGCACTGTGTAAGCCAATGGGGACATGATTTCCGTCCAGATTACAGGGGATTAGGATGTCTTAAGCAGATATTCCGTGATGTTCCAGTGATGGCATTAACTGCCACAGCAACTCATTCTGTTCGTGAGGACATTTTAAAAGCTTTAAGAATTCCCCATGCTCTTGTCCTCGAAAGAAGTTTTGATAGGCCCAACTTGAAATATGAAGTCATCGGTAAGACCAAGGAATCACAGAAGCAGCTTGGAGAGCTACTGAGGAGTCGTTTCCAAAACCAGTCCGGAATTGTATACTGCCTTTCAAAAAGTGAATGCGTTGAGGTATCAAATTTTCTGAATGAAAAATTTAAGATGAAGACAGCATATTATCATGCTGGGATTGCTGCTCGCCAAAGAGTTGCTGTGCAAAAGAAGTGGTACACAGGAGAGCGTTTCGTCATCCACAACACGATATCCAAATCAGTAGAAAGCTATTACCAAGAATCTGGAAGGGCTGGTAGAGACGATCTTCCTGCTGTATGCATTGTCCTATACCAGAAGAAGGATTTTAGTCGGGTTGTATGTATGTTACGTAACGGTCAAGGATGTAAGAGCCAAAGTTTCAAGACATCTATGGCTCAAGCTCAGAAAATGCAAGAGTACTGTGAATTAAAGGTTAGAAACTTCAAACAATCAAGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031668 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042221 GO:0042623 GO:0042631 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

259

Amino Acids

29.5

Weight (kDa)

9.33

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05740 AT3G05740
fragaria_vesca	FvH4_6g07200 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210
malus_domestica	MD04G1195500.v1.1 MD12G1207600.v1.1 MD12G1207700.v1.1 MD12G1207800.v1.1
prunus_persica	Prupe.6G315200_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1
pyrus_communis	pycom04g17270 pycom12g19520 pycom12g19530
rosa_chinensis	RchiOBHm_Chr3g0456831 RchiOBHm_Chr3g0456841
rosa_laevigata	RLG00000025275
rosa_multiflora	Rmu_co8434835.1_g000001 Rmu_sc0000133.1_g000020
rosa_roxburghii	Rroxscaffold_6G00422450 Rroxscaffold_6G00422460
rosa_rugosa	Rorug03G0016100 Rorug03G0016200 Rorug03G0016300.1
rosa_samantha	Rh3AG076400 Rh3AG076600 Rh3BG078200 Rh3BG078400 Rh3CG078000 Rh3CG078200 Rh3DG080100 Rh3DG080200
rosa_wichuraiana	Rw3G006560 Rw3G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	384
AccIII	TCCGGA	1 cut(s)	374
AcsI	RAATTY	3 cut(s)	246, 421, 437
AfaI	GTAC	2 cut(s)	512, 734
AfiI	CCNNNNNNNGG	1 cut(s)	634
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	4 cut(s)	295, 396, 697, 760
AluBI	AGCT	8 cut(s)	24, 39, 73, 239, 337, 346, 564, 716
AluI	AGCT	8 cut(s)	24, 39, 73, 239, 337, 346, 564, 716
Alw26I	GTCTC	1 cut(s)	588
Aor13HI	TCCGGA	1 cut(s)	374
AoxI	GGCC	1 cut(s)	284
ApeKI	GCWGC	3 cut(s)	70, 334, 476
ApoI	RAATTY	3 cut(s)	246, 421, 437
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	285
AsuNHI	GCTAGC	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	455
BbvI	GCAGC	3 cut(s)	82, 346, 463
BccI	CCATC	1 cut(s)	181
BcgI	CGANNNNNNTGC	2 cut(s)	587, 621
BcoDI	GTCTC	1 cut(s)	588
BfaI	CTAG	1 cut(s)	74
BfrI	CTTAAG	1 cut(s)	158
BisI	GCNGC	3 cut(s)	71, 335, 477
BlsI	GCNGC	3 cut(s)	72, 336, 478
BmcAI	AGTACT	1 cut(s)	734
BmgT120I	GGNCC	1 cut(s)	285
BmtI	GCTAGC	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	696
BsaAI	YACGTR	1 cut(s)	665
BsaJI	CCNNGG	1 cut(s)	318
BsaWI	WCCGGW	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	1 cut(s)	634
Bse1I	ACTGG	2 cut(s)	182, 370
BseAI	TCCGGA	1 cut(s)	374
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	3 cut(s)	158, 531, 683
BseLI	CCNNNNNNNGG	1 cut(s)	634
BseMII	CTCAG	2 cut(s)	341, 731
BseNI	ACTGG	2 cut(s)	182, 370
BseRI	GAGGAG	1 cut(s)	367
BseXI	GCAGC	3 cut(s)	82, 346, 463
BseYI	CCCAGC	1 cut(s)	467
BshFI	GGCC	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	634
BsmAI	GTCTC	1 cut(s)	588
BsmBI	CGTCTC	1 cut(s)	588
BsmFI	GGGAC	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	286
Bsp13I	TCCGGA	1 cut(s)	374
Bsp143I	GATC	1 cut(s)	598
BspANI	GGCC	1 cut(s)	286
BspCNI	CTCAG	2 cut(s)	342, 730
BspEI	TCCGGA	1 cut(s)	374
BspOI	GCTAGC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	158
BsrI	ACTGG	2 cut(s)	182, 370
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	1 cut(s)	598
BssNAI	GTATAC	1 cut(s)	385
BssT1I	CCWWGG	1 cut(s)	318
Bst1107I	GTATAC	1 cut(s)	385
Bst4CI	ACNGT	3 cut(s)	104, 671, 737
BstAFI	CTTAAG	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstBAI	YACGTR	1 cut(s)	665
BstC8I	GCNNGC	3 cut(s)	6, 75, 481
BstDEI	CTNAG	3 cut(s)	40, 350, 717
BstF5I	GGATG	3 cut(s)	158, 531, 683
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	1 cut(s)	601
BstMAI	GTCTC	1 cut(s)	588
BstMBI	GATC	1 cut(s)	598
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 343, 473
BstSNI	TACGTA	1 cut(s)	665
BstV1I	GCAGC	3 cut(s)	82, 346, 463
BstV2I	GAAGAC	1 cut(s)	455
BstXI	CCANNNNNNTGG	1 cut(s)	578
BstZ17I	GTATAC	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	286
BtsCI	GGATG	3 cut(s)	158, 531, 683
BtsIMutI	CAGTG	2 cut(s)	100, 189
Cac8I	GCNNGC	3 cut(s)	6, 75, 481
CfoI	GCGC	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	285
Csp6I	GTAC	2 cut(s)	511, 733
CspCI	CAANNNNNGTGG	2 cut(s)	488, 523
CviAII	CATG	3 cut(s)	122, 254, 464
CviQI	GTAC	2 cut(s)	511, 733
DdeI	CTNAG	3 cut(s)	40, 350, 717
DpnI	GATC	1 cut(s)	600
DpnII	GATC	1 cut(s)	598
DraI	TTTAAA	2 cut(s)	19, 234
Eco105I	TACGTA	1 cut(s)	665
Eco130I	CCWWGG	1 cut(s)	318
Eco32I	GATATC	1 cut(s)	546
EcoRI	GAATTC	1 cut(s)	246
EcoRV	GATATC	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	318
EcoT22I	ATGCAT	1 cut(s)	617
ErhI	CCWWGG	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	588
FaeI	CATG	3 cut(s)	125, 257, 467
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	3 cut(s)	121, 253, 463
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	3 cut(s)	71, 335, 477
FokI	GGATG	3 cut(s)	165, 518, 690
Fsp4HI	GCNGC	3 cut(s)	71, 335, 477
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	3 cut(s)	71, 335, 477
GsaI	CCCAGC	1 cut(s)	471
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	1 cut(s)	375
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	3 cut(s)	125, 257, 467
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	3 cut(s)	323, 355, 575
HpaII	CCGG	1 cut(s)	375
Hpy166II	GTNNAC	3 cut(s)	91, 385, 513
Hpy188I	TCNGA	2 cut(s)	429, 720
Hpy188III	TCNNGA	5 cut(s)	134, 221, 375, 579, 697
Hpy8I	GTNNAC	3 cut(s)	91, 385, 513
HpyAV	CCTTC	2 cut(s)	576, 628
HpyCH4III	ACNGT	3 cut(s)	104, 671, 737
HpyCH4IV	ACGT	1 cut(s)	664
HpyCH4V	TGCA	4 cut(s)	8, 499, 615, 727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 343, 473
HpyF3I	CTNAG	3 cut(s)	40, 350, 717
HpySE526I	ACGT	1 cut(s)	664
Hsp92II	CATG	3 cut(s)	125, 257, 467
HspAI	GCGC	1 cut(s)	98
Kpn2I	TCCGGA	1 cut(s)	374
Kzo9I	GATC	1 cut(s)	598
Lsp1109I	GCAGC	3 cut(s)	82, 346, 463
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	664
MaeIII	GTNAC	2 cut(s)	660, 665
MalI	GATC	1 cut(s)	600
MboI	GATC	1 cut(s)	598
MboII	GAAGA	3 cut(s)	460, 593, 643
MluCI	AATT	5 cut(s)	246, 378, 421, 437, 740
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	4 cut(s)	217, 275, 345, 406
Mph1103I	ATGCAT	1 cut(s)	617
MroI	TCCGGA	1 cut(s)	374
MseI	TTAA	9 cut(s)	18, 57, 159, 194, 233, 242, 441, 743, 775
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	410
MwoI	GCNNNNNNNGC	3 cut(s)	197, 343, 473
NdeII	GATC	1 cut(s)	598
NheI	GCTAGC	1 cut(s)	73
NlaIII	CATG	3 cut(s)	125, 257, 467
NsiI	ATGCAT	1 cut(s)	617
PctI	GAATGC	1 cut(s)	410
PfeI	GAWTC	2 cut(s)	323, 575
PkrI	GCNGC	3 cut(s)	72, 336, 478
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
Ppu21I	YACGTR	1 cut(s)	665
PspFI	CCCAGC	1 cut(s)	467
PspPI	GGNCC	1 cut(s)	285
RsaI	GTAC	2 cut(s)	512, 734
RsaNI	GTAC	2 cut(s)	511, 733
SaqAI	TTAA	9 cut(s)	18, 57, 159, 194, 233, 242, 441, 743, 775
SatI	GCNGC	3 cut(s)	71, 335, 477
Sau3AI	GATC	1 cut(s)	598
Sau96I	GGNCC	1 cut(s)	285
ScaI	AGTACT	1 cut(s)	734
SchI	GAGTC	1 cut(s)	364
SmlI	CTYRAG	2 cut(s)	158, 711
SmoI	CTYRAG	2 cut(s)	158, 711
SnaBI	TACGTA	1 cut(s)	665
Sse9I	AATT	5 cut(s)	246, 378, 421, 437, 740
SspMI	CTAG	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	3 cut(s)	104, 671, 737
TaiI	ACGT	1 cut(s)	667
TaqI	TCGA	2 cut(s)	35, 267
TasI	AATT	5 cut(s)	246, 378, 421, 437, 740
TatI	WGTACW	1 cut(s)	732
TfiI	GAWTC	2 cut(s)	323, 575
Tru1I	TTAA	9 cut(s)	18, 57, 159, 194, 233, 242, 441, 743, 775
Tru9I	TTAA	9 cut(s)	18, 57, 159, 194, 233, 242, 441, 743, 775
TscAI	CASTG	2 cut(s)	107, 189
TseI	GCWGC	3 cut(s)	70, 334, 476
TspDTI	ATGAA	3 cut(s)	315, 447, 461
TspGWI	ACGGA	2 cut(s)	119, 161
TspRI	CASTG	2 cut(s)	107, 189
Vha464I	CTTAAG	1 cut(s)	158
XapI	RAATTY	3 cut(s)	246, 421, 437
XmiI	GTMKAC	1 cut(s)	384
XspI	CTAG	1 cut(s)	74
ZrmI	AGTACT	1 cut(s)	734
Zsp2I	ATGCAT	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.