Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8434835.1

Orthogroup ID

OG0002897

Physical Location & Seq

Genomic Coordinates Reverse (-)

208 .. 1437

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8434835.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggagtctgaagcttgtggagcattgaataacatgtttggaaatggtaatgaagcaggtaactatgataatgctagtgccaaaaccaacatgccagaagattcacttgaacgtcaaaagtacccgaatttgttggtgctggattcgagtgatagtgaagactttgaattaagaactccattaagaagaacagttggatccttttcttcttcatgtcctgttcagagcaattctgccctaccccagaatatggaaagatcaaggggttgtgaaagcaccattagtcgagacagagttccatcaatttctagtaagaagcagtgtgttcgaacagcaaaggatgaatttaagactcttacttatgaagaactacagttgctggatgatgctgagctggccaatgttgtaatatttggtaataggacctttcgaccattgcagcatcaggcttgtaaagcagccatggcaaagcaagattgctttatcctaatgcctactggagggggtaaaagcttatgttatcaggatcagatagtaactctgaacctcaagtttggtataccagcaacttttttgaattctcagcaaactgcttcccaagcagcagctgtcctccaagagctgaggcaaggttcttttcttttctttgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031668 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042221 GO:0042623 GO:0042631 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

217

Amino Acids

23.97

Weight (kDa)

5.19

Isoelectric Point (pI)

62.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05740 AT3G05740
fragaria_vesca	FvH4_6g07200 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210
malus_domestica	MD04G1195500.v1.1 MD12G1207600.v1.1 MD12G1207700.v1.1 MD12G1207800.v1.1
prunus_persica	Prupe.6G315200_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1
pyrus_communis	pycom04g17270 pycom12g19520 pycom12g19530
rosa_chinensis	RchiOBHm_Chr3g0456831 RchiOBHm_Chr3g0456841
rosa_laevigata	RLG00000025275
rosa_multiflora	Rmu_co8434835.1_g000001 Rmu_sc0000133.1_g000020
rosa_roxburghii	Rroxscaffold_6G00422450 Rroxscaffold_6G00422460
rosa_rugosa	Rorug03G0016100 Rorug03G0016200 Rorug03G0016300.1
rosa_samantha	Rh3AG076400 Rh3AG076600 Rh3BG078200 Rh3BG078400 Rh3CG078000 Rh3CG078200 Rh3DG080100 Rh3DG080200
rosa_wichuraiana	Rw3G006560 Rw3G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	47
AccB7I	CCANNNNNTGG	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	559
AclWI	GGATC	3 cut(s)	192, 205, 534
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	3 cut(s)	127, 344, 577
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	250, 500
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	4 cut(s)	28, 110, 167, 577
AluBI	AGCT	5 cut(s)	14, 394, 513, 608, 622
AluI	AGCT	5 cut(s)	14, 394, 513, 608, 622
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	3 cut(s)	192, 205, 534
AlwNI	CAGNNNCTG	2 cut(s)	379, 608
AoxI	GGCC	1 cut(s)	396
ApeKI	GCWGC	4 cut(s)	439, 458, 602, 605
ApoI	RAATTY	3 cut(s)	127, 344, 577
AspS9I	GGNCC	1 cut(s)	423
AsuII	TTCGAA	1 cut(s)	328
AvaII	GGWCC	1 cut(s)	423
BalI	TGGCCA	1 cut(s)	398
BamHI	GGATCC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	165
BbvCI	CCTCAGC	1 cut(s)	623
BbvI	GCAGC	4 cut(s)	451, 470, 614, 617
BccI	CCATC	1 cut(s)	307
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	2 cut(s)	75, 309
BfmI	CTRYAG	1 cut(s)	371
BfuAI	ACCTGC	1 cut(s)	47
BisI	GCNGC	4 cut(s)	440, 459, 603, 606
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	4 cut(s)	441, 460, 604, 607
Bme18I	GGWCC	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	423
BmiI	GGNNCC	1 cut(s)	199
BmsI	GCATC	2 cut(s)	376, 451
BpiI	GAAGAC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	519
Bpu10I	CCTNAGC	1 cut(s)	623
Bpu1102I	GCTNAGC	1 cut(s)	390
Bpu14I	TTCGAA	1 cut(s)	328
BpuEI	CTTGAG	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	462
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 500
Bse1I	ACTGG	1 cut(s)	502
Bse3DI	GCAATG	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	2 cut(s)	346, 388
BseLI	CCNNNNNNNGG	2 cut(s)	250, 500
BseMI	GCAATG	1 cut(s)	434
BseMII	CTCAG	3 cut(s)	381, 596, 614
BseNI	ACTGG	1 cut(s)	502
BseXI	GCAGC	4 cut(s)	451, 470, 614, 617
BshFI	GGCC	1 cut(s)	398
BslI	CCNNNNNNNGG	2 cut(s)	250, 500
BsmAI	GTCTC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	398
Bsp119I	TTCGAA	1 cut(s)	328
Bsp143I	GATC	3 cut(s)	197, 257, 526
Bsp1720I	GCTNAGC	1 cut(s)	390
Bsp19I	CCATGG	1 cut(s)	462
BspANI	GGCC	1 cut(s)	398
BspCNI	CTCAG	3 cut(s)	382, 595, 615
BspLI	GGNNCC	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	47
BspPI	GGATC	3 cut(s)	192, 205, 534
BspT104I	TTCGAA	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	3 cut(s)	197, 257, 526
BssNAI	GTATAC	1 cut(s)	560
BssT1I	CCWWGG	1 cut(s)	462
Bst1107I	GTATAC	1 cut(s)	560
Bst4CI	ACNGT	2 cut(s)	193, 375
BstBI	TTCGAA	1 cut(s)	328
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	3 cut(s)	390, 582, 623
BstDSI	CCRYGG	1 cut(s)	462
BstENI	CCTNNNNNAGG	1 cut(s)	498
BstF5I	GGATG	2 cut(s)	346, 388
BstKTI	GATC	3 cut(s)	200, 260, 529
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	3 cut(s)	197, 257, 526
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 395, 455, 464, 599
BstNSI	RCATGY	2 cut(s)	37, 94
BstSFI	CTRYAG	1 cut(s)	371
BstV1I	GCAGC	4 cut(s)	451, 470, 614, 617
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BstZ17I	GTATAC	1 cut(s)	560
BsuRI	GGCC	1 cut(s)	398
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	2 cut(s)	346, 388
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	326
BveI	ACCTGC	1 cut(s)	47
Cac8I	GCNNGC	1 cut(s)	396
CaiI	CAGNNNCTG	2 cut(s)	379, 608
Cfr13I	GGNCC	1 cut(s)	423
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	4 cut(s)	34, 91, 213, 463
CviJI	RGCY	8 cut(s)	14, 394, 398, 449, 461, 513, 608, 622
CviKI_1	RGCY	8 cut(s)	14, 394, 398, 449, 461, 513, 608, 622
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	3 cut(s)	390, 582, 623
DpnI	GATC	3 cut(s)	199, 259, 528
DpnII	GATC	3 cut(s)	197, 257, 526
EaeI	YGGCCR	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	423
Eco57I	CTGAAG	1 cut(s)	30
EcoNI	CCTNNNNNAGG	1 cut(s)	498
EcoO109I	RGGNCCY	1 cut(s)	423
EcoRI	GAATTC	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	4 cut(s)	37, 94, 216, 466
FaiI	YATR	9 cut(s)	35, 66, 92, 214, 251, 363, 464, 517, 560
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FatI	CATG	4 cut(s)	33, 90, 212, 462
FblI	GTMKAC	1 cut(s)	559
Fnu4HI	GCNGC	4 cut(s)	440, 459, 603, 606
FokI	GGATG	2 cut(s)	353, 395
Fsp4HI	GCNGC	4 cut(s)	440, 459, 603, 606
FspBI	CTAG	2 cut(s)	75, 309
GluI	GCNGC	4 cut(s)	440, 459, 603, 606
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	1 cut(s)	398
Hin1II	CATG	4 cut(s)	37, 94, 216, 466
HindIII	AAGCTT	2 cut(s)	12, 511
HinfI	GANTC	4 cut(s)	5, 101, 143, 352
Hpy166II	GTNNAC	1 cut(s)	560
Hpy188I	TCNGA	4 cut(s)	10, 225, 531, 543
Hpy188III	TCNNGA	2 cut(s)	287, 524
Hpy8I	GTNNAC	1 cut(s)	560
HpyCH4III	ACNGT	2 cut(s)	193, 375
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	439
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 395, 455, 464, 599
HpyF3I	CTNAG	3 cut(s)	390, 582, 623
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	4 cut(s)	37, 94, 216, 466
Kzo9I	GATC	3 cut(s)	197, 257, 526
LmnI	GCTCC	1 cut(s)	20
Lsp1109I	GCAGC	4 cut(s)	451, 470, 614, 617
LweI	GCATC	2 cut(s)	376, 451
MaeI	CTAG	2 cut(s)	75, 309
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	2 cut(s)	59, 535
MalI	GATC	3 cut(s)	199, 259, 528
MboI	GATC	3 cut(s)	197, 257, 526
MboII	GAAGA	6 cut(s)	110, 170, 198, 198, 201, 377
MflI	RGATCY	1 cut(s)	197
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	6 cut(s)	127, 167, 229, 303, 344, 577
MluNI	TGGCCA	1 cut(s)	398
MlyI	GAGTC	2 cut(s)	14, 346
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	4 cut(s)	494, 557, 618, 623
Mox20I	TGGCCA	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	3 cut(s)	170, 182, 348
Msp20I	TGGCCA	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	608
MwoI	GCNNNNNNNGC	5 cut(s)	20, 395, 455, 464, 599
NcoI	CCATGG	1 cut(s)	462
NdeII	GATC	3 cut(s)	197, 257, 526
NlaIII	CATG	4 cut(s)	37, 94, 216, 466
NlaIV	GGNNCC	1 cut(s)	199
NspI	RCATGY	2 cut(s)	37, 94
NspV	TTCGAA	1 cut(s)	328
PciI	ACATGT	1 cut(s)	33
PfeI	GAWTC	2 cut(s)	101, 143
PflMI	CCANNNNNTGG	1 cut(s)	250
PkrI	GCNGC	4 cut(s)	441, 460, 604, 607
PleI	GAGTC	2 cut(s)	13, 346
PpsI	GAGTC	2 cut(s)	13, 346
PpuMI	RGGWCCY	1 cut(s)	423
PscI	ACATGT	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	423
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	423
PspPPI	RGGWCCY	1 cut(s)	423
PstNI	CAGNNNCTG	2 cut(s)	379, 608
PsuI	RGATCY	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SaqAI	TTAA	3 cut(s)	170, 182, 348
SatI	GCNGC	4 cut(s)	440, 459, 603, 606
Sau3AI	GATC	3 cut(s)	197, 257, 526
Sau96I	GGNCC	1 cut(s)	423
SchI	GAGTC	2 cut(s)	14, 346
SfaNI	GCATC	2 cut(s)	376, 451
SfcI	CTRYAG	1 cut(s)	371
SfuI	TTCGAA	1 cut(s)	328
SinI	GGWCC	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	6 cut(s)	127, 167, 229, 303, 344, 577
SspI	AATATT	1 cut(s)	411
SspMI	CTAG	2 cut(s)	75, 309
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	2 cut(s)	193, 375
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	4 cut(s)	146, 286, 328, 430
TasI	AATT	6 cut(s)	127, 167, 229, 303, 344, 577
TfiI	GAWTC	2 cut(s)	101, 143
Tru1I	TTAA	3 cut(s)	170, 182, 348
Tru9I	TTAA	3 cut(s)	170, 182, 348
TscAI	CASTG	1 cut(s)	326
TseI	GCWGC	4 cut(s)	439, 458, 602, 605
TspDTI	ATGAA	4 cut(s)	66, 201, 357, 378
TspRI	CASTG	1 cut(s)	326
Van91I	CCANNNNNTGG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	423
XagI	CCTNNNNNAGG	1 cut(s)	498
XapI	RAATTY	3 cut(s)	127, 344, 577
XceI	RCATGY	2 cut(s)	37, 94
XmiI	GTMKAC	1 cut(s)	559
XspI	CTAG	2 cut(s)	75, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.