Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002897

Physical Location & Seq

Genomic Coordinates Forward (+)

6123264 .. 6129435

Gene Structure 6172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG078200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1632 bp

ATGGAGTCTGAAGCTTGTGGAGCATTGAATAACATGTTTGGAAATGGTAATGAAGCAGGTAACGATGATAATGCCAGTGCCAAAACCAACATGCCAGAAGATTCACTTGAACATCAAAAGTACCCAAATTTGTTGGTGCTGGATTCGAGTGATAGTGAAGACTTTGAATTAAGAACTCCATTAAGAAGAACAGTTGGATCCTTTTCTTCTTCATGTCCTGTTCAGAGCAATTCTGCCCTACCCCAGAATATGGAAAGATCAAGGGGTTGTGAAAGCACCATTAGTCGAGACAGAGTTCCATCAATTTCTAGTAAGAAGCAGTGTGTTCGAACAGCAAAGGATGCATTTAAGACTCTTACTTATGAAGAACTACAGTTGCTGGATGATGCTGAGCTGGCCAATGTTGTAATATTTGGTAATAGGACCTTTCGACCATTGCAGCATCAGGCTTGTAAAGCAGCCATGGCAAAGCAAGATTGCTTTATCCTAATGCCTACTGGAGGGGGTAAAAGCTTATGTTACCAGCTTCCTGCAACCCTGAAACCAGGTGTGACAATAGTTGTCTCTCCACTGCTTTCTCTTATTCAGGATCAGATAGTAACTCTGAACCTCAAGTTTGGTATACCAGCAACTTTTTTGAATTCTCAGCAAACTGCTTCCCAAGCAGCAGCTGTCCTCCAAGAGCTGAGGAAAGATAAGCCATCATGCAAGCTTCTGTATGTGACTCCTGAGAGAATTGCTGGAAGCTCATGTTTCCTTGAGGTTCTAGAATGCTTGCATTTGAAGGGGATGCTAGCAGGATTTGTTGTTGATGAAGCGCACTGCGTAAGCCAATGGGGACATGATTTTCGTCCAGATTACAAGGGATTAGGTTGTCTTAAGCAGAAGTTCCGAGATGTTCCGGTGATGGCATTGACTGCTACTGCAACCCATCCAGTTCGTAAGGACATACTAAAAATTTTGAAAATTCCCCATGCTCTTGTCCTTGAAAGAAGCTTTGACAGACCCAATTTGAAATATGAAGTGATTGGTAAGGCGAAGGAAGCACTAAAGCAGCTTGGGCAACTATTGATGAGCCGTTTTCAGAACCAGTGTGGAATTATATACTGCCTCTCCAAAAGTGAATCCGTTGAGGTTTCAAAATTTCTGAATGAGAAATTTAAGATTAAGACAGCGCATTACCATGCCGGGATGGCAGCTCGCCAAAGAGTTGCTGTCCAAAAGAAATGGTACACAGGAGAGATCCAAATTGTATGTGCTACAATTGCTTTTGGGATGGGAATAGACAAGCCAGATGTTCGTTTTGTTATACACAACAGTCTATCCAAATCCATTGAAAGCTACTATCAAGAATCTGGAAGGGCTGGCAGAGATGATCTTCCTTCAGCATGCATTGTCCTGTACCAGAAGAAGGATTTTAGTCGGGTTGTATGTATGTTGCGAAACGGACAAGGATTTAAAAGTCAAAGATTCAAGGCAGCTATGGCTCAAGCTCAGAAAATGCAGGAGTATTGTGAATTAAAGGCTCAGTGTCGGAGACAAATGTTGCTCAAACACTTCGGAGAGTCTTTTGATGAATACGCCTGCAAAAATGGATCTAATCCTTGTGATAACTGTCTCAAGACTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031668 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042221 GO:0042623 GO:0042631 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

543

Amino Acids

60.53

Weight (kDa)

8.9

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	144 - 313	1.9e-23	DEAD/DEAH box helicase
Helicase_C	PF00271	350 - 457	3.2e-19	Helicase conserved C-terminal domain
RecQ_Zn_bind	PF16124	471 - 540	2.3e-14	RecQ zinc-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05740 AT3G05740
fragaria_vesca	FvH4_6g07200 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210
malus_domestica	MD04G1195500.v1.1 MD12G1207600.v1.1 MD12G1207700.v1.1 MD12G1207800.v1.1
prunus_persica	Prupe.6G315200_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1
pyrus_communis	pycom04g17270 pycom12g19520 pycom12g19530
rosa_chinensis	RchiOBHm_Chr3g0456831 RchiOBHm_Chr3g0456841
rosa_laevigata	RLG00000025275
rosa_multiflora	Rmu_co8434835.1_g000001 Rmu_sc0000133.1_g000020
rosa_roxburghii	Rroxscaffold_6G00422450 Rroxscaffold_6G00422460
rosa_rugosa	Rorug03G0016100 Rorug03G0016200 Rorug03G0016300.1
rosa_samantha	Rh3AG076400 Rh3AG076600 Rh3BG078200 Rh3BG078400 Rh3CG078000 Rh3CG078200 Rh3DG080100 Rh3DG080200
rosa_wichuraiana	Rw3G006560 Rw3G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	47
AccB7I	CCANNNNNTGG	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	622
AclWI	GGATC	5 cut(s)	192, 205, 597, 1237, 1603
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	6 cut(s)	127, 640, 957, 966, 1142, 1157
AcuI	CTGAAG	2 cut(s)	30, 1368
AfaI	GTAC	3 cut(s)	122, 1232, 1403
AfiI	CCNNNNNNNGG	3 cut(s)	250, 500, 1411
AflII	CTTAAG	1 cut(s)	878
AflIII	ACRYGT	1 cut(s)	33
AjnI	CCWGG	1 cut(s)	544
Alw26I	GTCTC	4 cut(s)	282, 568, 1531, 1622
AlwI	GGATC	5 cut(s)	192, 205, 597, 1237, 1603
AlwNI	CAGNNNCTG	2 cut(s)	379, 671
AoxI	GGCC	1 cut(s)	396
ApeKI	GCWGC	7 cut(s)	439, 458, 665, 668, 1054, 1196, 1478
ApoI	RAATTY	6 cut(s)	127, 640, 957, 966, 1142, 1157
ArsI	GACNNNNNNTTYG	2 cut(s)	831, 863
AspLEI	GCGC	2 cut(s)	820, 1177
AspS9I	GGNCC	1 cut(s)	423
AsuC2I	CCSGG	1 cut(s)	1189
AsuHPI	GGTGA	1 cut(s)	916
AsuII	TTCGAA	1 cut(s)	328
AsuNHI	GCTAGC	1 cut(s)	793
AvaII	GGWCC	1 cut(s)	423
BalI	TGGCCA	1 cut(s)	398
BamHI	GGATCC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	165
BbvCI	CCTCAGC	1 cut(s)	686
BbvI	GCAGC	7 cut(s)	451, 470, 677, 680, 1066, 1208, 1490
BccI	CCATC	6 cut(s)	307, 709, 901, 939, 1186, 1270
BceAI	ACGGC	1 cut(s)	1062
BcgI	CGANNNNNNTGC	4 cut(s)	53, 87, 308, 342
BciT130I	CCWGG	1 cut(s)	546
BcnI	CCSGG	1 cut(s)	1189
BcoDI	GTCTC	4 cut(s)	282, 568, 1531, 1622
BfaI	CTAG	4 cut(s)	309, 767, 794, 1630
BfmI	CTRYAG	1 cut(s)	371
BfrI	CTTAAG	1 cut(s)	878
BfuAI	ACCTGC	1 cut(s)	47
BglI	GCCNNNNNGGC	1 cut(s)	1193
BisI	GCNGC	7 cut(s)	440, 459, 666, 669, 1055, 1197, 1479
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	7 cut(s)	441, 460, 667, 670, 1056, 1198, 1480
Bme1390I	CCNGG	2 cut(s)	546, 1189
Bme18I	GGWCC	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	423
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	2 cut(s)	546, 1189
BmsI	GCATC	4 cut(s)	331, 376, 451, 780
BmtI	GCTAGC	1 cut(s)	797
BpiI	GAAGAC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	519
Bpu10I	CCTNAGC	1 cut(s)	686
Bpu1102I	GCTNAGC	1 cut(s)	390
Bpu14I	TTCGAA	1 cut(s)	328
BpuEI	CTTGAG	4 cut(s)	596, 779, 1473, 1604
BpuMI	CCSGG	1 cut(s)	1189
BsaJI	CCNNGG	1 cut(s)	462
BsaWI	WCCGGW	1 cut(s)	901
BsaXI	ACNNNNNCTCC	2 cut(s)	1097, 1127
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 500, 1411
Bse1I	ACTGG	4 cut(s)	75, 502, 935, 1090
Bse3DI	GCAATG	1 cut(s)	434
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	6 cut(s)	346, 388, 795, 931, 1197, 1281
BseLI	CCNNNNNNNGG	3 cut(s)	250, 500, 1411
BseMI	GCAATG	1 cut(s)	434
BseMII	CTCAG	6 cut(s)	381, 659, 677, 720, 1508, 1541
BseNI	ACTGG	4 cut(s)	75, 502, 935, 1090
BseXI	GCAGC	7 cut(s)	451, 470, 677, 680, 1066, 1208, 1490
BshFI	GGCC	1 cut(s)	398
BsiSI	CCGG	2 cut(s)	902, 1188
BslFI	GGGAC	1 cut(s)	852
BslI	CCNNNNNNNGG	3 cut(s)	250, 500, 1411
BsmAI	GTCTC	4 cut(s)	282, 568, 1531, 1622
BsmFI	GGGAC	1 cut(s)	852
BsmI	GAATGC	1 cut(s)	776
BsnI	GGCC	1 cut(s)	398
Bsp119I	TTCGAA	1 cut(s)	328
Bsp143I	GATC	6 cut(s)	197, 257, 589, 1242, 1375, 1595
Bsp1720I	GCTNAGC	1 cut(s)	390
Bsp19I	CCATGG	1 cut(s)	462
BspANI	GGCC	1 cut(s)	398
BspCNI	CTCAG	6 cut(s)	382, 658, 678, 721, 1507, 1540
BspLI	GGNNCC	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	47
BspOI	GCTAGC	1 cut(s)	797
BspPI	GGATC	5 cut(s)	192, 205, 597, 1237, 1603
BspT104I	TTCGAA	1 cut(s)	328
BspTI	CTTAAG	1 cut(s)	878
BsrDI	GCAATG	1 cut(s)	434
BsrI	ACTGG	4 cut(s)	75, 502, 935, 1090
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	6 cut(s)	197, 257, 589, 1242, 1375, 1595
BssNAI	GTATAC	1 cut(s)	623
BssT1I	CCWWGG	1 cut(s)	462
Bst1107I	GTATAC	1 cut(s)	623
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	4 cut(s)	193, 375, 1319, 1616
BstAFI	CTTAAG	1 cut(s)	878
BstAPI	GCANNNNNTGC	2 cut(s)	341, 917
BstBI	TTCGAA	1 cut(s)	328
BstC8I	GCNNGC	8 cut(s)	396, 710, 776, 795, 1201, 1366, 1390, 1585
BstDEI	CTNAG	6 cut(s)	390, 645, 686, 729, 1494, 1527
BstDSI	CCRYGG	1 cut(s)	462
BstENI	CCTNNNNNAGG	1 cut(s)	498
BstF5I	GGATG	6 cut(s)	346, 388, 795, 931, 1197, 1281
BstHHI	GCGC	2 cut(s)	820, 1177
BstKTI	GATC	6 cut(s)	200, 260, 592, 1245, 1378, 1598
BstMAI	GTCTC	4 cut(s)	282, 568, 1531, 1622
BstMBI	GATC	6 cut(s)	197, 257, 589, 1242, 1375, 1595
BstNI	CCWGG	1 cut(s)	546
BstNSI	RCATGY	3 cut(s)	37, 94, 1392
BstSCI	CCNGG	2 cut(s)	544, 1187
BstSFI	CTRYAG	1 cut(s)	371
BstV1I	GCAGC	7 cut(s)	451, 470, 677, 680, 1066, 1208, 1490
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	3 cut(s)	197, 1242, 1595
BstYI	RGATCY	3 cut(s)	197, 1242, 1595
BstZ17I	GTATAC	1 cut(s)	623
BsuRI	GGCC	1 cut(s)	398
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	6 cut(s)	346, 388, 795, 931, 1197, 1281
BtsI	GCAGTG	3 cut(s)	326, 569, 820
BtsIMutI	CAGTG	6 cut(s)	82, 326, 569, 820, 1097, 1535
BveI	ACCTGC	1 cut(s)	47
Cac8I	GCNNGC	8 cut(s)	396, 710, 776, 795, 1201, 1366, 1390, 1585
CaiI	CAGNNNCTG	2 cut(s)	379, 671
CfoI	GCGC	2 cut(s)	820, 1177
Cfr13I	GGNCC	1 cut(s)	423
CsiI	ACCWGGT	1 cut(s)	544
Csp6I	GTAC	3 cut(s)	121, 1231, 1402
CviQI	GTAC	3 cut(s)	121, 1231, 1402
DdeI	CTNAG	6 cut(s)	390, 645, 686, 729, 1494, 1527
DpnI	GATC	6 cut(s)	199, 259, 591, 1244, 1377, 1597
DpnII	GATC	6 cut(s)	197, 257, 589, 1242, 1375, 1595
DraI	TTTAAA	1 cut(s)	1459
EaeI	YGGCCR	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	423
Eco57I	CTGAAG	2 cut(s)	30, 1368
EcoNI	CCTNNNNNAGG	1 cut(s)	498
EcoO109I	RGGNCCY	1 cut(s)	423
EcoRI	GAATTC	1 cut(s)	640
EcoRII	CCWGG	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	462
EcoT22I	ATGCAT	2 cut(s)	346, 1394
ErhI	CCWWGG	1 cut(s)	462
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FaqI	GGGAC	1 cut(s)	852
FblI	GTMKAC	1 cut(s)	622
Fnu4HI	GCNGC	7 cut(s)	440, 459, 666, 669, 1055, 1197, 1479
FokI	GGATG	6 cut(s)	353, 395, 802, 918, 1204, 1288
Fsp4HI	GCNGC	7 cut(s)	440, 459, 666, 669, 1055, 1197, 1479
FspBI	CTAG	4 cut(s)	309, 767, 794, 1630
GlaI	GCGC	2 cut(s)	819, 1176
GluI	GCNGC	7 cut(s)	440, 459, 666, 669, 1055, 1197, 1479
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	1 cut(s)	398
HapII	CCGG	2 cut(s)	902, 1188
HhaI	GCGC	2 cut(s)	820, 1177
Hin6I	GCGC	2 cut(s)	818, 1175
HinP1I	GCGC	2 cut(s)	818, 1175
HindIII	AAGCTT	4 cut(s)	12, 511, 710, 994
HinfI	GANTC	9 cut(s)	5, 101, 143, 352, 724, 1124, 1352, 1470, 1565
HpaII	CCGG	2 cut(s)	902, 1188
HphI	GGTGA	1 cut(s)	916
Hpy166II	GTNNAC	2 cut(s)	623, 1233
Hpy188III	TCNNGA	8 cut(s)	287, 587, 728, 767, 854, 1349, 1356, 1621
Hpy8I	GTNNAC	2 cut(s)	623, 1233
HpyAV	CCTTC	5 cut(s)	778, 1033, 1353, 1392, 1405
HpyCH4III	ACNGT	4 cut(s)	193, 375, 1319, 1616
HpyCH4V	TGCA	9 cut(s)	344, 439, 533, 708, 778, 926, 1392, 1504, 1587
HpyF3I	CTNAG	6 cut(s)	390, 645, 686, 729, 1494, 1527
HspAI	GCGC	2 cut(s)	818, 1175
Kzo9I	GATC	6 cut(s)	197, 257, 589, 1242, 1375, 1595
LmnI	GCTCC	1 cut(s)	20
Lsp1109I	GCAGC	7 cut(s)	451, 470, 677, 680, 1066, 1208, 1490
LweI	GCATC	4 cut(s)	331, 376, 451, 780
MabI	ACCWGGT	1 cut(s)	544
MaeI	CTAG	4 cut(s)	309, 767, 794, 1630
MaeIII	GTNAC	5 cut(s)	59, 518, 550, 598, 721
MalI	GATC	6 cut(s)	199, 259, 591, 1244, 1377, 1597
MboI	GATC	6 cut(s)	197, 257, 589, 1242, 1375, 1595
MboII	GAAGA	8 cut(s)	110, 170, 198, 198, 201, 377, 1370, 1420
MfeI	CAATTG	1 cut(s)	1263
MflI	RGATCY	3 cut(s)	197, 1242, 1595
MlsI	TGGCCA	1 cut(s)	398
MluNI	TGGCCA	1 cut(s)	398
MlyI	GAGTC	4 cut(s)	14, 346, 718, 1574
MmeI	TCCRAC	2 cut(s)	175, 1514
MnlI	CCTC	7 cut(s)	494, 620, 681, 686, 754, 1121, 1126
Mox20I	TGGCCA	1 cut(s)	398
Mph1103I	ATGCAT	2 cut(s)	346, 1394
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	8 cut(s)	170, 182, 348, 879, 1161, 1167, 1458, 1520
MslI	CAYNNNNRTG	1 cut(s)	1182
Msp20I	TGGCCA	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	671
MspCI	CTTAAG	1 cut(s)	878
MspI	CCGG	2 cut(s)	902, 1188
MspR9I	CCNGG	2 cut(s)	546, 1189
MunI	CAATTG	1 cut(s)	1263
Mva1269I	GAATGC	1 cut(s)	776
MvaI	CCWGG	1 cut(s)	546
NciI	CCSGG	1 cut(s)	1189
NcoI	CCATGG	1 cut(s)	462
NdeII	GATC	6 cut(s)	197, 257, 589, 1242, 1375, 1595
NheI	GCTAGC	1 cut(s)	793
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	2 cut(s)	550, 721
NsiI	ATGCAT	2 cut(s)	346, 1394
NspI	RCATGY	3 cut(s)	37, 94, 1392
NspV	TTCGAA	1 cut(s)	328
PaeI	GCATGC	1 cut(s)	1392
PciI	ACATGT	1 cut(s)	33
PctI	GAATGC	1 cut(s)	776
PfeI	GAWTC	5 cut(s)	101, 143, 1124, 1352, 1470
PflMI	CCANNNNNTGG	1 cut(s)	250
PkrI	GCNGC	7 cut(s)	441, 460, 667, 670, 1056, 1198, 1480
PleI	GAGTC	4 cut(s)	13, 346, 718, 1573
PpsI	GAGTC	4 cut(s)	13, 346, 718, 1573
PpuMI	RGGWCCY	1 cut(s)	423
PscI	ACATGT	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	423
PspPPI	RGGWCCY	1 cut(s)	423
PstNI	CAGNNNCTG	2 cut(s)	379, 671
PsuI	RGATCY	3 cut(s)	197, 1242, 1595
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	3 cut(s)	122, 1232, 1403
RsaNI	GTAC	3 cut(s)	121, 1231, 1402
RseI	CAYNNNNRTG	1 cut(s)	1182
SaqAI	TTAA	8 cut(s)	170, 182, 348, 879, 1161, 1167, 1458, 1520
SatI	GCNGC	7 cut(s)	440, 459, 666, 669, 1055, 1197, 1479
Sau3AI	GATC	6 cut(s)	197, 257, 589, 1242, 1375, 1595
Sau96I	GGNCC	1 cut(s)	423
SchI	GAGTC	4 cut(s)	14, 346, 718, 1574
ScrFI	CCNGG	2 cut(s)	546, 1189
SexAI	ACCWGGT	1 cut(s)	544
SfaNI	GCATC	4 cut(s)	331, 376, 451, 780
SfcI	CTRYAG	1 cut(s)	371
SfuI	TTCGAA	1 cut(s)	328
SinI	GGWCC	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	1182
SmlI	CTYRAG	5 cut(s)	611, 758, 878, 1488, 1619
SmoI	CTYRAG	5 cut(s)	611, 758, 878, 1488, 1619
SphI	GCATGC	1 cut(s)	1392
SspI	AATATT	1 cut(s)	411
SspMI	CTAG	4 cut(s)	309, 767, 794, 1630
StyD4I	CCNGG	2 cut(s)	544, 1187
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	4 cut(s)	193, 375, 1319, 1616
TaqI	TCGA	4 cut(s)	146, 286, 328, 430
TfiI	GAWTC	5 cut(s)	101, 143, 1124, 1352, 1470
Tru1I	TTAA	8 cut(s)	170, 182, 348, 879, 1161, 1167, 1458, 1520
Tru9I	TTAA	8 cut(s)	170, 182, 348, 879, 1161, 1167, 1458, 1520
TscAI	CASTG	6 cut(s)	82, 326, 576, 827, 1097, 1535
TseFI	GTSAC	2 cut(s)	550, 721
TseI	GCWGC	7 cut(s)	439, 458, 665, 668, 1054, 1196, 1478
Tsp45I	GTSAC	2 cut(s)	550, 721
TspDTI	ATGAA	6 cut(s)	66, 201, 378, 828, 1035, 1590
TspGWI	ACGGA	2 cut(s)	1117, 1461
TspRI	CASTG	6 cut(s)	82, 326, 576, 827, 1097, 1535
Van91I	CCANNNNNTGG	1 cut(s)	250
Vha464I	CTTAAG	1 cut(s)	878
VpaK11BI	GGWCC	1 cut(s)	423
XagI	CCTNNNNNAGG	1 cut(s)	498
XapI	RAATTY	6 cut(s)	127, 640, 957, 966, 1142, 1157
XbaI	TCTAGA	1 cut(s)	766
XceI	RCATGY	3 cut(s)	37, 94, 1392
XmiI	GTMKAC	1 cut(s)	622
XspI	CTAG	4 cut(s)	309, 767, 794, 1630
Zsp2I	ATGCAT	2 cut(s)	346, 1394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.