Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002897

Physical Location & Seq

Genomic Coordinates Forward (+)

6175108 .. 6180111

Gene Structure 5004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G006570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2682 bp

ATGGAGGTTGAGAAAAAACGTTCAAAAGGTTTTTTCAATTTATTTGATTGGAATGGCAAATCTCGGAAGAAGCTCTTCTCTAGCAATTCTGAATCATCAGGATCACAGCAAGGAAAAGAGAATGTGGAGAATTTCTCGCAGACACGGCTCAATAGGGTTGAGCTGGATGAGAAAGGAGCAAGTTCAAGTAATAAAGGAAGCGGCGATTGGAATTGTGCTTCGTCGGTGACTAGTGATGAAGGAGGTGGGAGTAGAGCCCCTGGGGTAGTTGCTAGATTAATGGGTCTTGATTCATTGCCAACTTCAACGGTTACTGATTCATCTTCTACCTTATCAATCGACTCCCACTCACTTATAGTACCTCATCATGACAGGGTCAATCCTAATTTGTGGGGTGATTTTTATGCCATGGATTACATGAATATGCCCAACAAGCTGGATACAGTTTCAAGGAATCCTGTAGAATCTAGGGCACAGAGGGTGCAAAACCGGCCAATTGAGAGATTTCAAACAGAAGTCTTGCCTCCAAAATCAGCCAAGTCTATTCCAGTTACTCACCATAAGCTTTTGTCACCTATCAAGACTCCTGGCTTCATCCCAACAAAGAATGCGGCTTACATAATGGAAGCAGCTGCAAAGATGATTGAGGCAAGTCCTAGAGAATCTTCCAAGAGCGAAATGTCATCTATGAGGTCGTCTTCAATTCCATTGAGAATTCGGGATTTGAAAGAGAAGATGGAAGCTGTGCCTAAAGTATCAAGACCTGAACGACCCAATGCTAAATATATGAAAGGAAGGCCTGGTTACAGGAGCTATAATGGGTCAGATAATGTACCAGTACTCAAGGCTTCTGTGGATTCAGAAAAACAGAATTACAATGATATAAGGAATAAGGGAAAAGCAGTACCACTTGCAGTACAAGCAAAGGCCAATCTTCAGAGAAAGGAAGGGTCCCCTCCCTTCAGTCATAGGAGTTTCACAAACCAGAAGGAACAGAATGAGGTCAAACAAAATGAGTTCTCCAAGAGCCGGCAAAGCACACAGAGACCTGTGCATAAGAGAACTTCTGCTGTCAGCAACAGAAGTGTGCTCAAGCAGAACAACCAGAAGCAGAATTGTGTATCTGACAAAGATAAAATGACTTCAAAGAATGTGGTTCCTAATCAACCTACTAGAAGAATGCGGTCAATTAATGGCTCTAGTCGACCAAATAGGACTGTAAATAAGGTTCTTGTAAACTCTGAAACTGGATCAAGAAAGATGGGCTCAATGGCAACTGCTACCGGAAAGGAATTCTCCACAGTTAAAGATGTCTCTGGGAAGATACGGTCTGCTAGTCAGGACTTTCATTTAGAAGAAACTGCTGCTTATAATGGATTGATCGGTAAGGATGAAAGGTCTGTAAAATGTAATGTTGCAATGGAGGGGTACACCAATTTGAGCATGGATAATAGAAAACAAGACATGGATGTTGTTTCATTTACATTCACTTCTCCCCTGAAAAAATCCATTTCTGAATTGCAGTCCACTGGCCAAGTTGTGAGTATGAATAACAGATTTTGTATCGATTCTTTTGGTAATAATGATCAGCAAAGCGACCCAGAGCATTTTACACTTTCTTTACCTGGGTTGAATGTGGTTGGTGGTGATGCTTTGAGTGTTCTTTTGGAACAAAAGCTTCAAGAATTGACATGCAAAGTTGAGTCATCTCAGCATAACCTGTTTGGTGAAGGGACTTCTGCTAGTTCTTCGTTTAGCTTGCAAGATTTGGTTTCCAGTGAGGCAAGCACCACATCAAGAGGCAAGAAGTTCGAACTTGGTTTGCTCAGAGATAAAGTTGATGACATACCAGACTTTGATTTTCCGTCACCTGATGTAAACCAAAAGTGGCAGGGACCAGAAGGGATGGAAGAGTGTAGCAGTAGCAGCAAAAACAGTGGAACTGGAAAGGATTTTGATTATCATCTTAACCCAGTTTCATTTTTTGAACCCTCATTTGAGAGTGGAAGCTGCACAGATAACAGAAGTAGTGCCAATGGATGTGAGAGTGAGAGGTGTTCATTTGCTCAAGCTCAAGATCAAATCAATTTATTCTCCACATTTGAAATCCAACCATGTGGTGCTTCCGAGTTATCTGACTCGGCCTTCACTTGGGAAGTGAGTGGAAAAAATATGACTAGAATATTTGGTTTTCATTCTCCCAATCAATCAAACGATTGGGAACGAGAATATGTGCAGTATATACTTAGCCAGGTGGACTTAGTGATTGAAGATTTTGCATTGGGTGATACCGACTGTGCTATTTCCCCAAATCTCTTTGATAATTTACACTATCAAGAAGAGTATCCGAAGCTCCAGCAGAAGCTCTTGTTTGACAGTGTAAACGAAAGCCTGCACAACAGATGCAAGCAAATTGTTGTTGGAAGCCGGAAAGCATGGGATAGATGGGAGACATTGTCGCAGAGGAAGGAATCGTTGGCTGAGGAACTGTATAAAGAAATTTCGGTTTGGAAAAATATGGGGGACTTGATGGCCGATGACCTTGTGGAGAAGGACATGAGCACTCAGCGTGGGAGATGGCTCAACTTTGAGATTGAAGCATTTGAGGAAGCTGTAGAGATTGAGAAGGGAATACTAGGTTGTTTAGTAGATGAGTTAGTATCTGATATTCTGCTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

893

Amino Acids

99.8

Weight (kDa)

6.35

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VARLMGL	PF14383	74 - 104	1.7e-14	DUF761-associated sequence motif
DUF4378	PF14309	742 - 885	1e-29	Domain of unknown function (DUF4378)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05740 AT3G05740
fragaria_vesca	FvH4_6g07200 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210 FvH4_6g07210
malus_domestica	MD04G1195500.v1.1 MD12G1207600.v1.1 MD12G1207700.v1.1 MD12G1207800.v1.1
prunus_persica	Prupe.6G315200_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1 Prupe.6G315300_v2.0.a1
pyrus_communis	pycom04g17270 pycom12g19520 pycom12g19530
rosa_chinensis	RchiOBHm_Chr3g0456831 RchiOBHm_Chr3g0456841
rosa_laevigata	RLG00000025275
rosa_multiflora	Rmu_co8434835.1_g000001 Rmu_sc0000133.1_g000020
rosa_roxburghii	Rroxscaffold_6G00422450 Rroxscaffold_6G00422460
rosa_rugosa	Rorug03G0016100 Rorug03G0016200 Rorug03G0016300.1
rosa_samantha	Rh3AG076400 Rh3AG076600 Rh3BG078200 Rh3BG078400 Rh3CG078000 Rh3CG078200 Rh3DG080100 Rh3DG080200
rosa_wichuraiana	Rw3G006560 Rw3G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1371
AccI	GTMKAC	1 cut(s)	1204
AciI	CCGC	3 cut(s)	201, 611, 1183
AclI	AACGTT	1 cut(s)	19
AclWI	GGATC	2 cut(s)	109, 1258
AcoI	YGGCCR	3 cut(s)	491, 1531, 2532
AcsI	RAATTY	4 cut(s)	130, 714, 1292, 2499
AcuI	CTGAAG	2 cut(s)	920, 946
AfaI	GTAC	6 cut(s)	360, 834, 840, 906, 918, 1430
AfiI	CCNNNNNNNGG	2 cut(s)	1029, 2151
AhlI	ACTAGT	1 cut(s)	230
AjnI	CCWGG	5 cut(s)	259, 586, 799, 1624, 2250
AjuI	GAANNNNNNNTTGG	4 cut(s)	190, 222, 2459, 2491
Alw21I	GWGCWC	2 cut(s)	1092, 2564
Alw26I	GTCTC	3 cut(s)	1039, 1318, 2444
AlwI	GGATC	2 cut(s)	109, 1258
AoxI	GGCC	6 cut(s)	491, 797, 927, 1531, 2142, 2532
ApeKI	GCWGC	5 cut(s)	629, 632, 1364, 1926, 2010
ApoI	RAATTY	4 cut(s)	130, 714, 1292, 2499
AseI	ATTAAT	2 cut(s)	278, 1191
Asp700I	GAANNNNTTC	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	951, 1895
AsuHPI	GGTGA	8 cut(s)	238, 407, 548, 564, 1658, 1739, 1860, 2297
AsuII	TTCGAA	1 cut(s)	1812
AvaII	GGWCC	2 cut(s)	951, 1895
BaeGI	GKGCMC	1 cut(s)	475
BalI	TGGCCA	1 cut(s)	1533
BanII	GRGCYC	2 cut(s)	259, 1268
BbsI	GAAGAC	1 cut(s)	690
Bbv12I	GWGCWC	2 cut(s)	1092, 2564
BbvCI	CCTCAGC	1 cut(s)	2481
BbvI	GCAGC	5 cut(s)	619, 641, 1351, 1938, 1997
BccI	CCATC	6 cut(s)	730, 1255, 1900, 2439, 2524, 2571
BceAI	ACGGC	1 cut(s)	161
BcgI	CGANNNNNNTGC	2 cut(s)	1792, 1826
BciT130I	CCWGG	5 cut(s)	261, 588, 801, 1626, 2252
BciVI	GTATCC	2 cut(s)	433, 2355
BclI	TGATCA	1 cut(s)	1585
BcoDI	GTCTC	3 cut(s)	1039, 1318, 2444
BcuI	ACTAGT	1 cut(s)	230
BfmI	CTRYAG	2 cut(s)	459, 2613
BfuI	GTATCC	2 cut(s)	433, 2355
BisI	GCNGC	7 cut(s)	202, 612, 630, 633, 1365, 1927, 2011
BlsI	GCNGC	7 cut(s)	203, 613, 631, 634, 1366, 1928, 2012
BmcAI	AGTACT	1 cut(s)	840
Bme1390I	CCNGG	5 cut(s)	261, 588, 801, 1626, 2252
Bme18I	GGWCC	2 cut(s)	951, 1895
BmgT120I	GGNCC	2 cut(s)	951, 1895
BmiI	GGNNCC	4 cut(s)	952, 953, 1158, 1896
BmrFI	CCNGG	5 cut(s)	261, 588, 801, 1626, 2252
BmrI	ACTGGG	1 cut(s)	1967
BmsI	GCATC	2 cut(s)	1639, 2393
BmuI	ACTGGG	1 cut(s)	1967
BpiI	GAAGAC	1 cut(s)	690
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	1 cut(s)	2339
Bpu10I	CCTNAGC	1 cut(s)	2481
Bpu14I	TTCGAA	1 cut(s)	1812
BpuEI	CTTGAG	4 cut(s)	827, 1076, 2052, 2058
Bsa29I	ATCGAT	1 cut(s)	1566
BsaBI	GATNNNNATC	1 cut(s)	1962
BsaI	GGTCTC	1 cut(s)	1039
BsaJI	CCNNGG	4 cut(s)	259, 260, 408, 1625
BsaWI	WCCGGW	1 cut(s)	1283
BsaXI	ACNNNNNCTCC	2 cut(s)	2441, 2471
Bsc4I	CCNNNNNNNGG	2 cut(s)	1029, 2151
Bse118I	RCCGGY	2 cut(s)	489, 1029
Bse1I	ACTGG	7 cut(s)	548, 836, 1252, 1534, 1776, 1948, 1973
Bse3DI	GCAATG	2 cut(s)	293, 1425
Bse8I	GATNNNNATC	1 cut(s)	1962
BseBI	CCWGG	5 cut(s)	261, 588, 801, 1626, 2252
BseCI	ATCGAT	1 cut(s)	1566
BseDI	CCNNGG	4 cut(s)	259, 260, 408, 1625
BseGI	GGATG	6 cut(s)	172, 594, 1396, 1474, 1911, 2045
BseJI	GATNNNNATC	1 cut(s)	1962
BseLI	CCNNNNNNNGG	2 cut(s)	1029, 2151
BseMI	GCAATG	2 cut(s)	293, 1425
BseMII	CTCAG	4 cut(s)	1724, 1840, 2472, 2579
BseNI	ACTGG	7 cut(s)	548, 836, 1252, 1534, 1776, 1948, 1973
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	5 cut(s)	619, 641, 1351, 1938, 1997
BsgI	GTGCAG	3 cut(s)	1996, 2255, 2378
BshFI	GGCC	6 cut(s)	493, 799, 929, 1533, 2144, 2534
BshVI	ATCGAT	1 cut(s)	1566
BsiHKAI	GWGCWC	2 cut(s)	1092, 2564
BsiSI	CCGG	4 cut(s)	490, 1030, 1284, 2428
BslFI	GGGAC	4 cut(s)	937, 1747, 1908, 2537
BslI	CCNNNNNNNGG	2 cut(s)	1029, 2151
BsmAI	GTCTC	3 cut(s)	1039, 1318, 2444
BsmFI	GGGAC	4 cut(s)	937, 1747, 1908, 2537
BsmI	GAATGC	2 cut(s)	613, 1185
BsnI	GGCC	6 cut(s)	493, 799, 929, 1533, 2144, 2534
Bso31I	GGTCTC	1 cut(s)	1039
Bsp119I	TTCGAA	1 cut(s)	1812
Bsp1286I	GDGCHC	5 cut(s)	259, 475, 1092, 1268, 2564
Bsp143I	GATC	5 cut(s)	101, 1250, 1380, 1585, 2077
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	3 cut(s)	201, 611, 1183
BspANI	GGCC	6 cut(s)	493, 799, 929, 1533, 2144, 2534
BspCNI	CTCAG	4 cut(s)	1723, 1839, 2473, 2578
BspDI	ATCGAT	1 cut(s)	1566
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	4 cut(s)	952, 953, 1158, 1896
BspPI	GGATC	2 cut(s)	109, 1258
BspQI	GCTCTTC	1 cut(s)	80
BspT104I	TTCGAA	1 cut(s)	1812
BspTNI	GGTCTC	1 cut(s)	1039
BsrDI	GCAATG	2 cut(s)	293, 1425
BsrFI	RCCGGY	2 cut(s)	489, 1029
BsrI	ACTGG	7 cut(s)	548, 836, 1252, 1534, 1776, 1948, 1973
BssAI	RCCGGY	2 cut(s)	489, 1029
BssECI	CCNNGG	4 cut(s)	259, 260, 408, 1625
BssMI	GATC	5 cut(s)	101, 1250, 1380, 1585, 2077
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	5 cut(s)	261, 588, 801, 1626, 2252
Bst4CI	ACNGT	9 cut(s)	310, 445, 1219, 1303, 1329, 1937, 2297, 2378, 2490
Bst6I	CTCTTC	3 cut(s)	80, 1905, 2334
BstBI	TTCGAA	1 cut(s)	1812
BstC8I	GCNNGC	5 cut(s)	1031, 1760, 1786, 2393, 2408
BstDEI	CTNAG	6 cut(s)	1710, 1826, 2246, 2260, 2481, 2565
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	6 cut(s)	172, 594, 1396, 1474, 1911, 2045
BstKTI	GATC	5 cut(s)	104, 1253, 1383, 1588, 2080
BstMAI	GTCTC	3 cut(s)	1039, 1318, 2444
BstMBI	GATC	5 cut(s)	101, 1250, 1380, 1585, 2077
BstMWI	GCNNNNNNNGC	6 cut(s)	145, 433, 490, 920, 1035, 1926
BstNI	CCWGG	5 cut(s)	261, 588, 801, 1626, 2252
BstNSI	RCATGY	1 cut(s)	1695
BstSCI	CCNGG	5 cut(s)	259, 586, 799, 1624, 2250
BstSFI	CTRYAG	2 cut(s)	459, 2613
BstSLI	GKGCMC	1 cut(s)	475
BstV1I	GCAGC	5 cut(s)	619, 641, 1351, 1938, 1997
BstV2I	GAAGAC	1 cut(s)	690
BstXI	CCANNNNNNTGG	2 cut(s)	436, 2117
Bsu15I	ATCGAT	1 cut(s)	1566
BsuI	GTATCC	2 cut(s)	433, 2355
BsuRI	GGCC	6 cut(s)	493, 799, 929, 1533, 2144, 2534
BsuTUI	ATCGAT	1 cut(s)	1566
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	6 cut(s)	172, 594, 1396, 1474, 1911, 2045
BtsIMutI	CAGTG	4 cut(s)	1527, 1783, 1942, 2383
Cac8I	GCNNGC	5 cut(s)	1031, 1760, 1786, 2393, 2408
CciI	TCATGA	1 cut(s)	367
Cfr10I	RCCGGY	2 cut(s)	489, 1029
Cfr13I	GGNCC	2 cut(s)	951, 1895
ClaI	ATCGAT	1 cut(s)	1566
Csp6I	GTAC	6 cut(s)	359, 833, 839, 905, 917, 1429
CspCI	CAANNNNNGTGG	4 cut(s)	1134, 1169, 1918, 1953
CviAII	CATG	9 cut(s)	368, 409, 418, 1444, 1465, 1692, 2115, 2436, 2557
CviQI	GTAC	6 cut(s)	359, 833, 839, 905, 917, 1429
DdeI	CTNAG	6 cut(s)	1710, 1826, 2246, 2260, 2481, 2565
DpnI	GATC	5 cut(s)	103, 1252, 1382, 1587, 2079
DpnII	GATC	5 cut(s)	101, 1250, 1380, 1585, 2077
EaeI	YGGCCR	3 cut(s)	491, 1531, 2532
Eam1104I	CTCTTC	3 cut(s)	80, 1905, 2334
EarI	CTCTTC	3 cut(s)	80, 1905, 2334
Eco130I	CCWWGG	1 cut(s)	408
Eco147I	AGGCCT	1 cut(s)	799
Eco24I	GRGCYC	2 cut(s)	259, 1268
Eco31I	GGTCTC	1 cut(s)	1039
Eco47I	GGWCC	2 cut(s)	951, 1895
Eco57I	CTGAAG	2 cut(s)	920, 946
EcoO109I	RGGNCCY	1 cut(s)	951
EcoRI	GAATTC	2 cut(s)	714, 1292
EcoRII	CCWGG	5 cut(s)	259, 586, 799, 1624, 2250
EcoT14I	CCWWGG	1 cut(s)	408
EcoT38I	GRGCYC	2 cut(s)	259, 1268
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	9 cut(s)	371, 412, 421, 1447, 1468, 1695, 2118, 2439, 2560
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	4 cut(s)	937, 1747, 1908, 2537
FatI	CATG	9 cut(s)	367, 408, 417, 1443, 1464, 1691, 2114, 2435, 2556
FbaI	TGATCA	1 cut(s)	1585
FblI	GTMKAC	1 cut(s)	1204
Fnu4HI	GCNGC	7 cut(s)	202, 612, 630, 633, 1365, 1927, 2011
FokI	GGATG	6 cut(s)	179, 581, 1403, 1481, 1918, 2052
FriOI	GRGCYC	2 cut(s)	259, 1268
Fsp4HI	GCNGC	7 cut(s)	202, 612, 630, 633, 1365, 1927, 2011
GluI	GCNGC	7 cut(s)	202, 612, 630, 633, 1365, 1927, 2011
GsuI	CTGGAG	1 cut(s)	2339
HaeIII	GGCC	6 cut(s)	493, 799, 929, 1533, 2144, 2534
HapII	CCGG	4 cut(s)	490, 1030, 1284, 2428
Hin1II	CATG	9 cut(s)	371, 412, 421, 1447, 1468, 1695, 2118, 2439, 2560
HincII	GTYRAC	1 cut(s)	1205
HindII	GTYRAC	1 cut(s)	1205
HindIII	AAGCTT	2 cut(s)	563, 1676
HpaII	CCGG	4 cut(s)	490, 1030, 1284, 2428
HphI	GGTGA	8 cut(s)	238, 407, 548, 564, 1658, 1739, 1860, 2297
Hpy166II	GTNNAC	7 cut(s)	1205, 1237, 1431, 1527, 1879, 2257, 2383
Hpy8I	GTNNAC	7 cut(s)	1205, 1237, 1431, 1527, 1879, 2257, 2383
Hpy99I	CGWCG	1 cut(s)	226
HpyCH4III	ACNGT	9 cut(s)	310, 445, 1219, 1303, 1329, 1937, 2297, 2378, 2490
HpyCH4IV	ACGT	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	6 cut(s)	145, 433, 490, 920, 1035, 1926
HpyF3I	CTNAG	6 cut(s)	1710, 1826, 2246, 2260, 2481, 2565
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	9 cut(s)	371, 412, 421, 1447, 1468, 1695, 2118, 2439, 2560
KflI	GGGWCCC	1 cut(s)	951
KroI	GCCGGC	1 cut(s)	1029
KroNI	GCCGGC	1 cut(s)	1031
Ksp22I	TGATCA	1 cut(s)	1585
Kzo9I	GATC	5 cut(s)	101, 1250, 1380, 1585, 2077
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	3 cut(s)	176, 810, 2358
Lsp1109I	GCAGC	5 cut(s)	619, 641, 1351, 1938, 1997
LweI	GCATC	2 cut(s)	1639, 2393
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	6 cut(s)	226, 310, 550, 570, 803, 1866
MalI	GATC	5 cut(s)	103, 1252, 1382, 1587, 2079
MboI	GATC	5 cut(s)	101, 1250, 1380, 1585, 2077
MfeI	CAATTG	1 cut(s)	495
MhlI	GDGCHC	5 cut(s)	259, 475, 1092, 1268, 2564
MlsI	TGGCCA	1 cut(s)	1533
MluNI	TGGCCA	1 cut(s)	1533
MlyI	GAGTC	4 cut(s)	335, 577, 1712, 2132
MmeI	TCCRAC	2 cut(s)	2134, 2401
Mox20I	TGGCCA	1 cut(s)	1533
MroNI	GCCGGC	1 cut(s)	1029
MroXI	GAANNNNTTC	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	1533
MseI	TTAA	4 cut(s)	278, 1191, 1305, 1968
MslI	CAYNNNNRTG	1 cut(s)	422
Msp20I	TGGCCA	1 cut(s)	1533
MspA1I	CMGCKG	1 cut(s)	632
MspI	CCGG	4 cut(s)	490, 1030, 1284, 2428
MspR9I	CCNGG	5 cut(s)	261, 588, 801, 1626, 2252
MunI	CAATTG	1 cut(s)	495
Mva1269I	GAATGC	2 cut(s)	613, 1185
MvaI	CCWGG	5 cut(s)	261, 588, 801, 1626, 2252
MwoI	GCNNNNNNNGC	6 cut(s)	145, 433, 490, 920, 1035, 1926
NaeI	GCCGGC	1 cut(s)	1031
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	5 cut(s)	101, 1250, 1380, 1585, 2077
NgoMIV	GCCGGC	1 cut(s)	1029
NlaIII	CATG	9 cut(s)	371, 412, 421, 1447, 1468, 1695, 2118, 2439, 2560
NlaIV	GGNNCC	4 cut(s)	952, 953, 1158, 1896
NmeAIII	GCCGAG	1 cut(s)	2120
NmuCI	GTSAC	3 cut(s)	226, 570, 1866
NspI	RCATGY	1 cut(s)	1695
NspV	TTCGAA	1 cut(s)	1812
PagI	TCATGA	1 cut(s)	367
PasI	CCCWGGG	1 cut(s)	260
PceI	AGGCCT	1 cut(s)	799
PciSI	GCTCTTC	1 cut(s)	80
PctI	GAATGC	2 cut(s)	613, 1185
PdiI	GCCGGC	1 cut(s)	1031
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	9 cut(s)	92, 290, 317, 454, 464, 662, 857, 1568, 2471
PflFI	GACNNNGTC	2 cut(s)	374, 2455
PkrI	GCNGC	7 cut(s)	203, 613, 631, 634, 1366, 1928, 2012
PleI	GAGTC	4 cut(s)	335, 577, 1711, 2132
PpsI	GAGTC	4 cut(s)	335, 577, 1711, 2132
PpuMI	RGGWCCY	1 cut(s)	951
PshBI	ATTAAT	2 cut(s)	278, 1191
PsiI	TTATAA	1 cut(s)	1371
Psp1406I	AACGTT	1 cut(s)	19
Psp5II	RGGWCCY	1 cut(s)	951
Psp6I	CCWGG	5 cut(s)	259, 586, 799, 1624, 2250
PspGI	CCWGG	5 cut(s)	259, 586, 799, 1624, 2250
PspN4I	GGNNCC	4 cut(s)	952, 953, 1158, 1896
PspPI	GGNCC	2 cut(s)	951, 1895
PspPPI	RGGWCCY	1 cut(s)	951
PsrI	GAACNNNNNNTAC	2 cut(s)	1212, 1244
PsyI	GACNNNGTC	2 cut(s)	374, 2455
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	6 cut(s)	360, 834, 840, 906, 918, 1430
RsaNI	GTAC	6 cut(s)	359, 833, 839, 905, 917, 1429
RseI	CAYNNNNRTG	1 cut(s)	422
SalI	GTCGAC	1 cut(s)	1203
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	4 cut(s)	278, 1191, 1305, 1968
SatI	GCNGC	7 cut(s)	202, 612, 630, 633, 1365, 1927, 2011
Sau3AI	GATC	5 cut(s)	101, 1250, 1380, 1585, 2077
Sau96I	GGNCC	2 cut(s)	951, 1895
ScaI	AGTACT	1 cut(s)	840
SchI	GAGTC	4 cut(s)	335, 577, 1712, 2132
ScrFI	CCNGG	5 cut(s)	261, 588, 801, 1626, 2252
SduI	GDGCHC	5 cut(s)	259, 475, 1092, 1268, 2564
SfaNI	GCATC	2 cut(s)	1639, 2393
SfcI	CTRYAG	2 cut(s)	459, 2613
SfuI	TTCGAA	1 cut(s)	1812
SinI	GGWCC	2 cut(s)	951, 1895
SmiMI	CAYNNNNRTG	1 cut(s)	422
SmlI	CTYRAG	4 cut(s)	842, 1091, 2067, 2073
SmoI	CTYRAG	4 cut(s)	842, 1091, 2067, 2073
SpeI	ACTAGT	1 cut(s)	230
SseBI	AGGCCT	1 cut(s)	799
SsiI	CCGC	3 cut(s)	201, 611, 1183
SspI	AATATT	1 cut(s)	2184
StuI	AGGCCT	1 cut(s)	799
StyD4I	CCNGG	5 cut(s)	259, 586, 799, 1624, 2250
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	9 cut(s)	310, 445, 1219, 1303, 1329, 1937, 2297, 2378, 2490
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	4 cut(s)	339, 1204, 1566, 1812
TatI	WGTACW	2 cut(s)	838, 916
TauI	GCSGC	2 cut(s)	204, 614
TfiI	GAWTC	9 cut(s)	92, 290, 317, 454, 464, 662, 857, 1568, 2471
Tru1I	TTAA	4 cut(s)	278, 1191, 1305, 1968
Tru9I	TTAA	4 cut(s)	278, 1191, 1305, 1968
TscAI	CASTG	4 cut(s)	1534, 1783, 1942, 2383
TseFI	GTSAC	3 cut(s)	226, 570, 1866
TseI	GCWGC	5 cut(s)	629, 632, 1364, 1926, 2010
Tsp45I	GTSAC	3 cut(s)	226, 570, 1866
TspGWI	ACGGA	1 cut(s)	1854
TspRI	CASTG	4 cut(s)	1534, 1783, 1942, 2383
Tth111I	GACNNNGTC	2 cut(s)	374, 2455
VpaK11BI	GGWCC	2 cut(s)	951, 1895
VspI	ATTAAT	2 cut(s)	278, 1191
XapI	RAATTY	4 cut(s)	130, 714, 1292, 2499
XceI	RCATGY	1 cut(s)	1695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1441
XmiI	GTMKAC	1 cut(s)	1204
XmnI	GAANNNNTTC	1 cut(s)	74
ZrmI	AGTACT	1 cut(s)	840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.