Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003211

Physical Location & Seq

Genomic Coordinates Forward (+)

32118853 .. 32119714

Gene Structure 862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1182500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGACGGATAATTTAGAGAAAGAACCACTTGCCTTCAGCTTCAAGCAAGCCAAACTCTTGCCCCAACACCTCAGGTTTTCATATCCTCGAAAGTCTCTGAACACCGCGATAGTGCTAAGGTCTCTTGCAATCTCTCGAAAAGAAATTGTAAATGCTCTCCTTGATGGACAAGGACTTGGTGCTGCTGCACTAGAAAAGCTCACAAAAATTTCACCATCCAAAGAGGAAGAAGCAAAAATCGTCCAATTCAATGGAAACCCTAGTAAACTAGCACTTACTGAATCTTTCCTCTACCACATTTTGAAGGCTGTTCCTTCGGCATGCACACGTTTCAATGCGATGCTCTTCATCGAAAACTACGATCCGGAAGTCGTTCACCTCAAGGAGTCCTTCCAAACACTTGAAATTGGGTGCAAGGAGCTAAGAACTCGCGGGCTCTTCCTAAAGCTTCTCGAGGCAATTCTCAAAGCCGGCAATAGAGGCAATACACAAGGCTTCAACCTAAGTGCTCTTCTAAAGCTATCCGATATCAAAAGTACTGATGGAAACGCTGCTCTACTGCACTCTGTGGTTGAACAAGTAGCTCAATCCGAGGGAAGAGGCTTTGTGATAAATCAAAACCGCAGCTTTGGAAGAAACAGTACTCGATCAAAGAAGCCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005522 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0010638 GO:0016020 GO:0016043 GO:0016049 GO:0030029 GO:0030036 GO:0030054 GO:0030832 GO:0030833 GO:0030838 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0040007 GO:0043254 GO:0044087 GO:0044089 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0060560 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

222

Amino Acids

24.5

Weight (kDa)

9.69

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FH2	PF02181	15 - 196	6e-47	Formin Homology 2 Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24150 AT1G59910 AT1G70140
fragaria_vesca	FvH4_4g35240 FvH4_5g16231
malus_domestica	MD06G1182500.v1.1 MD13G1085100.v1.1 MD14G1188500.v1.1 MD16G1084300.v1.1
prunus_persica	Prupe.1G261700_v2.0.a1 Prupe.5G180600_v2.0.a1
pyrus_communis	pycom06g16140 pycom13g07360
rosa_chinensis	RchiOBHm_Chr4g0444841 RchiOBHm_Chr7g0179861
rosa_laevigata	RLG00000005317 RLG00000005796
rosa_multiflora	Rmu_sc0000096.1_g000028 Rmu_sc0001754.1_g000001 Rmu_sc0006845.1_g000009 Rmu_sc0031375.1_g000001 Rmu_sc0034891.1_g000002 Rmu_sc0034892.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273390 Rroxscaffold_5G00385330
rosa_rugosa	Rorug04G0355500 Rorug06G0428800
rosa_samantha	Rh4AG417000 Rh4BG428800 Rh4CG443600 Rh4DG424800 Rh7AG028700 Rh7BG027900 Rh7CG029600 Rh7DG029000
rosa_wichuraiana	Rw4G035740 Rw7G002300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	107, 432
AccIII	TCCGGA	1 cut(s)	364
AciI	CCGC	3 cut(s)	105, 432, 622
AclWI	GGATC	1 cut(s)	356
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	19
AdeI	CACNNNGTG	1 cut(s)	568
AfaI	GTAC	2 cut(s)	538, 643
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	7 cut(s)	43, 250, 304, 334, 404, 499, 575
AluBI	AGCT	7 cut(s)	39, 199, 421, 448, 520, 584, 627
AluI	AGCT	7 cut(s)	39, 199, 421, 448, 520, 584, 627
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	2 cut(s)	99, 126
AlwI	GGATC	1 cut(s)	356
Ama87I	CYCGRG	1 cut(s)	452
Aor13HI	TCCGGA	1 cut(s)	364
ApeKI	GCWGC	4 cut(s)	182, 185, 551, 624
ApoI	RAATTY	1 cut(s)	207
Asp700I	GAANNNNTTC	1 cut(s)	372
AsuHPI	GGTGA	2 cut(s)	204, 368
AvaI	CYCGRG	1 cut(s)	452
AxyI	CCTNAGG	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	438
BarI	GAAGNNNNNNTAC	2 cut(s)	625, 657
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	4 cut(s)	169, 172, 538, 636
BccI	CCATC	3 cut(s)	158, 223, 536
BcoDI	GTCTC	2 cut(s)	99, 126
BfaI	CTAG	4 cut(s)	191, 261, 269, 664
BisI	GCNGC	4 cut(s)	183, 186, 552, 625
BlsI	GCNGC	4 cut(s)	184, 187, 553, 626
BmcAI	AGTACT	2 cut(s)	538, 643
BmeT110I	CYCGRG	1 cut(s)	452
BmsI	GCATC	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	365
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	591
BsaWI	WCCGGW	1 cut(s)	364
Bse118I	RCCGGY	1 cut(s)	470
Bse21I	CCTNAGG	1 cut(s)	71
BseAI	TCCGGA	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	85
BseXI	GCAGC	4 cut(s)	169, 172, 538, 636
BsgI	GTGCAG	2 cut(s)	171, 545
Bsh1236I	CGCG	2 cut(s)	107, 432
BsiHKAI	GWGCWC	1 cut(s)	511
BsiHKCI	CYCGRG	1 cut(s)	452
BsiSI	CCGG	2 cut(s)	365, 471
BsmAI	GTCTC	2 cut(s)	99, 126
Bso31I	GGTCTC	1 cut(s)	126
BsoBI	CYCGRG	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	438, 511
Bsp13I	TCCGGA	1 cut(s)	364
Bsp143I	GATC	2 cut(s)	361, 647
BspACI	CCGC	3 cut(s)	105, 432, 622
BspCNI	CTCAG	1 cut(s)	84
BspEI	TCCGGA	1 cut(s)	364
BspFNI	CGCG	2 cut(s)	107, 432
BspPI	GGATC	1 cut(s)	356
BspQI	GCTCTTC	3 cut(s)	350, 443, 516
BspTNI	GGTCTC	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	470
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	1 cut(s)	591
BssMI	GATC	2 cut(s)	361, 647
Bst4CI	ACNGT	1 cut(s)	641
Bst6I	CTCTTC	4 cut(s)	350, 443, 516, 592
BstC8I	GCNNGC	4 cut(s)	48, 322, 434, 472
BstDEI	CTNAG	4 cut(s)	71, 116, 422, 503
BstF5I	GGATG	1 cut(s)	215
BstFNI	CGCG	2 cut(s)	107, 432
BstKTI	GATC	2 cut(s)	364, 650
BstMAI	GTCTC	2 cut(s)	99, 126
BstMBI	GATC	2 cut(s)	361, 647
BstMWI	GCNNNNNNNGC	1 cut(s)	480
BstNSI	RCATGY	1 cut(s)	324
BstUI	CGCG	2 cut(s)	107, 432
BstV1I	GCAGC	4 cut(s)	169, 172, 538, 636
BstXI	CCANNNNNNTGG	1 cut(s)	251
Bsu36I	CCTNAGG	1 cut(s)	71
BtgZI	GCGATG	1 cut(s)	353
BtsCI	GGATG	1 cut(s)	215
Cac8I	GCNNGC	4 cut(s)	48, 322, 434, 472
Cfr10I	RCCGGY	1 cut(s)	470
Csp6I	GTAC	2 cut(s)	537, 642
CviAII	CATG	1 cut(s)	321
CviQI	GTAC	2 cut(s)	537, 642
DdeI	CTNAG	4 cut(s)	71, 116, 422, 503
DpnI	GATC	2 cut(s)	363, 649
DpnII	GATC	2 cut(s)	361, 647
DraIII	CACNNNGTG	1 cut(s)	568
Eam1104I	CTCTTC	4 cut(s)	350, 443, 516, 592
EarI	CTCTTC	4 cut(s)	350, 443, 516, 592
Eco24I	GRGCYC	1 cut(s)	438
Eco31I	GGTCTC	1 cut(s)	126
Eco32I	GATATC	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	19
Eco81I	CCTNAGG	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	452
EcoRV	GATATC	1 cut(s)	529
EcoT38I	GRGCYC	1 cut(s)	438
FaeI	CATG	1 cut(s)	324
FaiI	YATR	2 cut(s)	82, 322
FalI	AAGNNNNNCTT	4 cut(s)	12, 44, 374, 406
FatI	CATG	1 cut(s)	320
FauI	CCCGC	1 cut(s)	425
Fnu4HI	GCNGC	4 cut(s)	183, 186, 552, 625
FokI	GGATG	1 cut(s)	202
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	4 cut(s)	183, 186, 552, 625
FspBI	CTAG	4 cut(s)	191, 261, 269, 664
GluI	GCNGC	4 cut(s)	183, 186, 552, 625
HapII	CCGG	2 cut(s)	365, 471
Hin1II	CATG	1 cut(s)	324
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	2 cut(s)	281, 386
HpaII	CCGG	2 cut(s)	365, 471
HphI	GGTGA	2 cut(s)	204, 368
Hpy166II	GTNNAC	2 cut(s)	266, 376
Hpy188I	TCNGA	3 cut(s)	99, 526, 592
Hpy188III	TCNNGA	3 cut(s)	135, 365, 452
Hpy8I	GTNNAC	2 cut(s)	266, 376
HpyAV	CCTTC	4 cut(s)	43, 298, 324, 400
HpyCH4III	ACNGT	1 cut(s)	641
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	5 cut(s)	128, 188, 324, 414, 562
HpyF10VI	GCNNNNNNNGC	1 cut(s)	480
HpyF3I	CTNAG	4 cut(s)	71, 116, 422, 503
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	1 cut(s)	324
Kpn2I	TCCGGA	1 cut(s)	364
KroI	GCCGGC	1 cut(s)	470
KroNI	GCCGGC	1 cut(s)	472
Kzo9I	GATC	2 cut(s)	361, 647
LguI	GCTCTTC	3 cut(s)	350, 443, 516
LmnI	GCTCC	1 cut(s)	418
LpnPI	CCDG	3 cut(s)	58, 378, 484
Lsp1109I	GCAGC	4 cut(s)	169, 172, 538, 636
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	4 cut(s)	191, 261, 269, 664
MaeII	ACGT	1 cut(s)	328
MalI	GATC	2 cut(s)	363, 649
MboI	GATC	2 cut(s)	361, 647
MboII	GAAGA	6 cut(s)	239, 337, 430, 503, 609, 645
MhlI	GDGCHC	2 cut(s)	438, 511
MluCI	AATT	6 cut(s)	10, 144, 207, 245, 405, 459
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	9 cut(s)	80, 96, 217, 299, 389, 448, 473, 586, 593
MroI	TCCGGA	1 cut(s)	364
MroNI	GCCGGC	1 cut(s)	470
MroXI	GAANNNNTTC	1 cut(s)	372
MspI	CCGG	2 cut(s)	365, 471
MvnI	CGCG	2 cut(s)	107, 432
MwoI	GCNNNNNNNGC	1 cut(s)	480
NaeI	GCCGGC	1 cut(s)	472
NdeII	GATC	2 cut(s)	361, 647
NgoMIV	GCCGGC	1 cut(s)	470
NlaIII	CATG	1 cut(s)	324
NspI	RCATGY	1 cut(s)	324
PaeI	GCATGC	1 cut(s)	324
PaeR7I	CTCGAG	1 cut(s)	452
PciSI	GCTCTTC	3 cut(s)	350, 443, 516
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PdiI	GCCGGC	1 cut(s)	472
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	4 cut(s)	184, 187, 553, 626
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
RsaI	GTAC	2 cut(s)	538, 643
RsaNI	GTAC	2 cut(s)	537, 642
SapI	GCTCTTC	3 cut(s)	350, 443, 516
SatI	GCNGC	4 cut(s)	183, 186, 552, 625
Sau3AI	GATC	2 cut(s)	361, 647
ScaI	AGTACT	2 cut(s)	538, 643
SchI	GAGTC	1 cut(s)	395
SduI	GDGCHC	2 cut(s)	438, 511
SfaNI	GCATC	1 cut(s)	330
Sfr274I	CTCGAG	1 cut(s)	452
SlaI	CTCGAG	1 cut(s)	452
SmlI	CTYRAG	2 cut(s)	380, 452
SmoI	CTYRAG	2 cut(s)	380, 452
SphI	GCATGC	1 cut(s)	324
Sse9I	AATT	6 cut(s)	10, 144, 207, 245, 405, 459
SsiI	CCGC	3 cut(s)	105, 432, 622
SspMI	CTAG	4 cut(s)	191, 261, 269, 664
TaaI	ACNGT	1 cut(s)	641
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	5 cut(s)	88, 136, 351, 453, 646
TasI	AATT	6 cut(s)	10, 144, 207, 245, 405, 459
TatI	WGTACW	2 cut(s)	536, 641
TfiI	GAWTC	1 cut(s)	281
TseI	GCWGC	4 cut(s)	182, 185, 551, 624
TspDTI	ATGAA	2 cut(s)	69, 337
TspGWI	ACGGA	1 cut(s)	20
XapI	RAATTY	1 cut(s)	207
XceI	RCATGY	1 cut(s)	324
XhoI	CTCGAG	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	4 cut(s)	191, 261, 269, 664
ZrmI	AGTACT	2 cut(s)	538, 643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.