Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003211

Physical Location & Seq

Genomic Coordinates Forward (+)

64415142 .. 64423183

Gene Structure 8042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00385330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3267 bp

ATGGCGGCGTGCTTCTCACTCGGGACCTTGCGAGTCCCCAACTCGGCGCCGGCGAGTGTTGTACTCGAAGCTCGTCCGCTTCAAGAAACCCTCCACTCCGTTTCGGCTAGCTTCTCCACATTCTTCATGTTCTCCGTCGGCAATTTGAACCCCTCCTCGATTGGTGGCGAGGGCGGCTTTATCATCTCACGGACGATGAGGTTGTCGAGACGCCGACGGGTTCTTGGGGCTCCGGAGCGTGAAGGACCGGGTTCGAGTTCGGGTCGAGCTTTGTGGCGGTGGAGTTCGACACTCTCATGGACGTGGAGTTCAAGGACATTAATAGCAACCACGTGGGCTCGAATCTCAACTCCATGGTTTCGTCACGGGTCGGCGATCTTGGAGCCGCGAATATTGATCTCGAAGCGGGGACCTCGTGAATTGTTGGATCGAATTACGCGGGTCGAGTCGGGTCTTCAACATATCTGTTTCGTATTCGAATCTCAAACCCACGAGTGGTGGAGCTTCGGCTCGTCTTTCGATTCAACTCCCTCGACCGGCTCAACAAAGACCGCCGCCTCCGACGACTACTCTAATGAACCCAACCGCCAACTCGGTCAAATCTCCACCGCCTTTTTTGGCTCCAGCGGCTCGGCTTCGGCTTCTAGTACTAGTACTACACGGAAGAACGATAAGTCTTTTTGCCATAACCGACTTTGCAAGCAAGGTCCGGAGCCGTTGCTTTGGTGCGGTCATAGTGGGGCTTTCGTTTTGGCGGTGAATACGAAGAAAGGAAGCGATGATCGGAAGCCGAGGAGCTTGAGGCTGCCGAAGTATAAGGCTCAAATGGAAAATCACGTTGTAACTGAGTTTGGAGATTTAGACGTTGACAAATTATTTCTGCTTTTGTACCCATCTGTTTCAACGTGTGAAACCCAATTCTTCCCTGACTGCAAAAATGATTACAGCTCTGGAAAGTTGATGAGTCAATCACAAAACATTGAGACTTTCTTTCCTTTTCCATTAACTCCAACCCCGGCGCCGGCTCCGGTTATTCCGATCTCCCCTTATTTACCTCCAGTAGAGTCGCCTCCACCGGAGCCGCAACAGCCTCTGCCGCTGCCGCTGCCGGAAAAGAAGTCTAATGACAACAGCAACATTGCAAAGGCGGCAGCGGCAACCGCAGCCAGCACTCTGGTGGTGTGTGCGGTGGTCTTCTTTTTTGTGCAACGGTGCATTGTTGCTAAGCGGAGGAGGAAGATCAGCGGCGGTGTTATTGGTGCTGGTGCTAGTAACAATTCCGGCTCACGAGGAAGCCATCGTGGTCAACCGGCTGCGGTCAACGGCAATGAGTTTGAAAGGTATGATGGGAATCTCAAGGGGTTTATTGTGGACGAGGATGGTCTTGATGTGCTGTATTGGAGAAAACTCGAGGGCAAAAACTCCAAAAAGAAGAGTTTCAAGAAGGCGGCGTTGCGAAATCGCAATATTGGAGACGAAATTGATGAGTATGATGATGGAAATGGAGAAGGGACTAGCAGAGAGAATGAGCTTCCTCTGTTTCGAGGCAGGTCTTCGACGTCTGACATTGATTTAGTGCCGGAAGGAAATGATCGGGTTCGGATTGGAAGTAGTAGTAGAATGATGGCTGCTAATAAGGGTGTTGAGATTAATCCAGAGCCAGTGGTGGAGCTGTCGCTTCAGTCTTCGGGTTCCTGGCCTCCACCTCATTCTCCACCACCAACACCACCTCCTCTGCCAATGAAAGCCCCTGCAGTGCCACTACCGCCGCCTCCTCCACCAGTTCCGGCTATGAAGGGCCAGGGACTGCCGCCTCCTCCGCCACCAAAGCCTAAGTCAAGAAGTTTGAACGCCTCATCAAAACCAGAGCCAAAGGGGGTGAAGCTGAAGCCACTACATTGGGACAAGGTGAACACTAATCATGAGCATTCCATGGTGTGGGACAAAATTGATAAGGGTTCGTTCAGATTTGATGGAGACCTTATGGAAGCTCTTTTTGGAACTGTTGCCACTAATCGGAAATCTCCTGAAAGAGGCACTGGTTCATCGTCACAAATTTGCATCTTAGATGAGAGGAAGTCTCAGAACTTTGCAATTGTTATAAAATCATTGACCATTTCTATCGAAGATATTCTTGATGTGCTAAATGAGGGCAGAGGTTTAAGTGCTGAAAATCTCGAAAAGCTTGCTAGGATTGCGCCAACTGAAGAGGAAATAGCCCAAATTCTTGCGTACAGTGAAGACCCTACAAGGCTTGCTGATGCTGAATGCTTCCTCTACCACATTTTGAAAGCTGTTCCATCGGCTTTTACTCGACTCAATGCCATGCATTTCAGACACAACTATGAGCAAGAGATTGTCCAACTCAAGGAGTCTTTACAGACAATTGAATTGGGATGCAAGGAACTTCGAACTAGAGGACTGTTTATGAAGCTGCTAGAAGCGATTCTCAAGGCTGGAAACCGAATGAATGCAGGAACTTCTAGAGGGAATGCGCAAGCTTTCAAGCTCAGCTCTCTTCGAAAACTATCTGATGTTCGAAGTAGTGATGGGAAGACTACTCTTCTTCATTTTGTTGTGGAAGAAGTGGTGCGGTCTGAGGGAAAACGGGGTGTTTTGAACAGGAACCATAGCTTGAGCCGCAGCAGCAGCCATAGCAGTAACGGCAACATGAGCTCTGAGCAGAATGTAAAATCTAAAGAGGATAGAGAGAAGGAGTATATGATGTTAGGATTGCCAGTGGTTGGAGGCATCAGTTCTGAGTTTTCAAATGTGAAGAAGGCAGCAACTATAGACTATGACAGCTTTGCAATCACTTGCTCGACTCTCACTAAACGAGCTGCGGAAACTAGAGAACTAGTACTCCAATGTGAGAAGGATGGTGGTGGAAGATTTGTTTTTGAGATGAACGATTTTCTTGAAGATGCCGAAGAAGAGCTAAAGGCGATGGCAAAAGAGCAGAGTAGGGTGATGGAATTTGTGAAGAACACTACGGAATATTACCAAGGAGGAGCTTCAAAGGAAAAGGGATCACACCCATTTCAACTATTTGTTGTGGTTAAGGATTTTCTAGGCATGGTTGATCAAGCATGCGTGGAAATATCTCGAAATGTGCAGAGGAGGAAGGCAGTGACGGCAAGTTCAGGAACATCAACATCACCAGACTCACCGCCATCAAGGAACCCTGTAAGGTTTCCAGTCTTACCTAAAAATTTCATGTCAGGAACCTCTAGAAGTAATTCTTGTGGATCAGATAATGATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005522 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0010638 GO:0016020 GO:0016043 GO:0016049 GO:0030029 GO:0030036 GO:0030054 GO:0030832 GO:0030833 GO:0030838 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0040007 GO:0043254 GO:0044087 GO:0044089 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0060560 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

1088

Amino Acids

119.47

Weight (kDa)

9.06

Isoelectric Point (pI)

55.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FH2	PF02181	621 - 1027	1.3e-100	Formin Homology 2 Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24150 AT1G59910 AT1G70140
fragaria_vesca	FvH4_4g35240 FvH4_5g16231
malus_domestica	MD06G1182500.v1.1 MD13G1085100.v1.1 MD14G1188500.v1.1 MD16G1084300.v1.1
prunus_persica	Prupe.1G261700_v2.0.a1 Prupe.5G180600_v2.0.a1
pyrus_communis	pycom06g16140 pycom13g07360
rosa_chinensis	RchiOBHm_Chr4g0444841 RchiOBHm_Chr7g0179861
rosa_laevigata	RLG00000005317 RLG00000005796
rosa_multiflora	Rmu_sc0000096.1_g000028 Rmu_sc0001754.1_g000001 Rmu_sc0006845.1_g000009 Rmu_sc0031375.1_g000001 Rmu_sc0034891.1_g000002 Rmu_sc0034892.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273390 Rroxscaffold_5G00385330
rosa_rugosa	Rorug04G0355500 Rorug06G0428800
rosa_samantha	Rh4AG417000 Rh4BG428800 Rh4CG443600 Rh4DG424800 Rh7AG028700 Rh7BG027900 Rh7CG029600 Rh7DG029000
rosa_wichuraiana	Rw4G035740 Rw7G002300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2102
AatII	GACGTC	1 cut(s)	1562
Acc16I	TGCGCA	1 cut(s)	2496
Acc36I	ACCTGC	1 cut(s)	1539
AccB1I	GGYRCC	2 cut(s)	46, 1018
AccB7I	CCANNNNNTGG	2 cut(s)	1938, 2744
AccII	CGCG	2 cut(s)	388, 439
AccIII	TCCGGA	2 cut(s)	232, 709
AclWI	GGATC	3 cut(s)	435, 3037, 3256
AcsI	RAATTY	4 cut(s)	2055, 2223, 2975, 3211
AcuI	CTGAAG	3 cut(s)	1664, 1907, 2226
AcvI	CACGTG	1 cut(s)	333
AcyI	GRCGYC	4 cut(s)	47, 211, 1019, 1559
AfaI	GTAC	6 cut(s)	63, 649, 655, 890, 2234, 2862
AfiI	CCNNNNNNNGG	9 cut(s)	43, 495, 536, 1021, 1938, 2016, 2033, 2368, 2744
AflIII	ACRYGT	1 cut(s)	905
AhlI	ACTAGT	2 cut(s)	650, 2857
AjiI	CACGTC	1 cut(s)	303
AjnI	CCWGG	2 cut(s)	1694, 1800
AjuI	GAANNNNNNNTTGG	2 cut(s)	1980, 2012
AleI	CACNNNNGTG	1 cut(s)	1175
AloI	GAACNNNNNNTCC	4 cut(s)	292, 324, 2847, 2879
Alw21I	GWGCWC	1 cut(s)	2678
Alw26I	GTCTC	5 cut(s)	202, 977, 1467, 1971, 2085
AlwI	GGATC	3 cut(s)	435, 3037, 3256
AlwNI	CAGNNNCTG	2 cut(s)	1093, 1807
Ama87I	CYCGRG	2 cut(s)	20, 1409
Aor13HI	TCCGGA	2 cut(s)	232, 709
AoxI	GGCC	2 cut(s)	1697, 1798
ApoI	RAATTY	4 cut(s)	2055, 2223, 2975, 3211
ArsI	GACNNNNNNTTYG	2 cut(s)	1820, 1852
AseI	ATTAAT	2 cut(s)	320, 1650
Asp700I	GAANNNNTTC	4 cut(s)	1436, 2130, 2445, 3238
AspLEI	GCGC	4 cut(s)	49, 1021, 2200, 2497
AspS9I	GGNCC	5 cut(s)	24, 245, 410, 707, 1798
AsuC2I	CCSGG	2 cut(s)	249, 1016
AsuHPI	GGTGA	6 cut(s)	769, 1891, 1921, 2980, 3150, 3159
AsuII	TTCGAA	4 cut(s)	477, 2410, 2521, 2539
AsuNHI	GCTAGC	1 cut(s)	107
AvaI	CYCGRG	2 cut(s)	20, 1409
AvaII	GGWCC	4 cut(s)	24, 245, 410, 707
BanI	GGYRCC	2 cut(s)	46, 1018
BanII	GRGCYC	3 cut(s)	232, 340, 2678
BauI	CACGAG	3 cut(s)	414, 491, 1287
BbrPI	CACGTG	1 cut(s)	333
BbsI	GAAGAC	6 cut(s)	446, 1186, 1545, 1677, 2247, 2561
Bbv12I	GWGCWC	1 cut(s)	2678
BceAI	ACGGC	4 cut(s)	700, 1339, 2680, 3150
BcgI	CGANNNNNNTGC	2 cut(s)	2168, 2202
BciT130I	CCWGG	2 cut(s)	1696, 1802
BclI	TGATCA	1 cut(s)	3082
BcnI	CCSGG	2 cut(s)	249, 1016
BcoDI	GTCTC	5 cut(s)	202, 977, 1467, 1971, 2085
BcuI	ACTAGT	2 cut(s)	650, 2857
BfmI	CTRYAG	2 cut(s)	1752, 2790
BfoI	RGCGCY	2 cut(s)	50, 1022
BfuAI	ACCTGC	1 cut(s)	1539
BlpI	GCTNAGC	2 cut(s)	1224, 2510
BmcAI	AGTACT	3 cut(s)	649, 655, 2862
Bme1390I	CCNGG	4 cut(s)	249, 1016, 1696, 1802
Bme18I	GGWCC	4 cut(s)	24, 245, 410, 707
BmeT110I	CYCGRG	2 cut(s)	20, 1409
BmgBI	CACGTC	1 cut(s)	303
BmgT120I	GGNCC	5 cut(s)	24, 245, 410, 707, 1798
BmrFI	CCNGG	4 cut(s)	249, 1016, 1696, 1802
BmsI	GCATC	5 cut(s)	2070, 2251, 2387, 2760, 2914
BmtI	GCTAGC	1 cut(s)	111
BpiI	GAAGAC	6 cut(s)	446, 1186, 1545, 1677, 2247, 2561
BplI	GAGNNNNNCTC	2 cut(s)	2065, 2097
BpmI	CTGGAG	2 cut(s)	607, 1041
Bpu1102I	GCTNAGC	2 cut(s)	1224, 2510
Bpu14I	TTCGAA	4 cut(s)	477, 2410, 2521, 2539
BpuEI	CTTGAG	5 cut(s)	820, 1340, 2351, 2435, 2656
BpuMI	CCSGG	2 cut(s)	249, 1016
BsaAI	YACGTR	1 cut(s)	333
BsaBI	GATNNNNATC	1 cut(s)	1350
BsaHI	GRCGYC	4 cut(s)	47, 211, 1019, 1559
BsaI	GGTCTC	1 cut(s)	1971
BsaJI	CCNNGG	6 cut(s)	353, 791, 1014, 1801, 1932, 3004
BsaWI	WCCGGW	4 cut(s)	232, 709, 1027, 1075
BsaXI	ACNNNNNCTCC	4 cut(s)	1714, 1744, 2847, 2877
Bsc4I	CCNNNNNNNGG	9 cut(s)	43, 495, 536, 1021, 1938, 2016, 2033, 2368, 2744
Bse118I	RCCGGY	4 cut(s)	49, 536, 1021, 1309
Bse1I	ACTGG	6 cut(s)	1058, 1661, 1781, 2044, 2738, 3197
Bse3DI	GCAATG	2 cut(s)	1137, 1333
Bse8I	GATNNNNATC	1 cut(s)	1350
BseAI	TCCGGA	2 cut(s)	232, 709
BseBI	CCWGG	2 cut(s)	1696, 1802
BseDI	CCNNGG	6 cut(s)	353, 791, 1014, 1801, 1932, 3004
BseGI	GGATG	3 cut(s)	1384, 2402, 2884
BseJI	GATNNNNATC	1 cut(s)	1350
BseLI	CCNNNNNNNGG	9 cut(s)	43, 495, 536, 1021, 1938, 2016, 2033, 2368, 2744
BseMI	GCAATG	2 cut(s)	1137, 1333
BseMII	CTCAG	6 cut(s)	837, 2096, 2524, 2589, 2670, 2751
BseNI	ACTGG	6 cut(s)	1058, 1661, 1781, 2044, 2738, 3197
BseRI	GAGGAG	8 cut(s)	145, 808, 1246, 1722, 1764, 1806, 3024, 3133
BsgI	GTGCAG	1 cut(s)	3134
Bsh1236I	CGCG	2 cut(s)	388, 439
Bsh1285I	CGRYCG	1 cut(s)	537
BshFI	GGCC	2 cut(s)	1699, 1800
BshNI	GGYRCC	2 cut(s)	46, 1018
BsiEI	CGRYCG	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	2678
BsiHKCI	CYCGRG	2 cut(s)	20, 1409
BslFI	GGGAC	7 cut(s)	20, 37, 423, 1525, 1818, 1916, 1955
BslI	CCNNNNNNNGG	9 cut(s)	43, 495, 536, 1021, 1938, 2016, 2033, 2368, 2744
BsmAI	GTCTC	5 cut(s)	202, 977, 1467, 1971, 2085
BsmBI	CGTCTC	2 cut(s)	202, 1467
BsmFI	GGGAC	7 cut(s)	20, 37, 423, 1525, 1818, 1916, 1955
BsmI	GAATGC	4 cut(s)	1927, 2273, 2476, 2497
BsnI	GGCC	2 cut(s)	1699, 1800
Bso31I	GGTCTC	1 cut(s)	1971
BsoBI	CYCGRG	2 cut(s)	20, 1409
Bsp119I	TTCGAA	4 cut(s)	477, 2410, 2521, 2539
Bsp1286I	GDGCHC	3 cut(s)	232, 340, 2678
Bsp13I	TCCGGA	2 cut(s)	232, 709
Bsp1720I	GCTNAGC	2 cut(s)	1224, 2510
Bsp19I	CCATGG	2 cut(s)	353, 1932
BspANI	GGCC	2 cut(s)	1699, 1800
BspCNI	CTCAG	6 cut(s)	838, 2095, 2523, 2590, 2671, 2752
BspEI	TCCGGA	2 cut(s)	232, 709
BspFNI	CGCG	2 cut(s)	388, 439
BspHI	TCATGA	1 cut(s)	1921
BspMAI	CTGCAG	1 cut(s)	1756
BspMI	ACCTGC	1 cut(s)	1539
BspOI	GCTAGC	1 cut(s)	111
BspPI	GGATC	3 cut(s)	435, 3037, 3256
BspQI	GCTCTTC	1 cut(s)	2928
BspT104I	TTCGAA	4 cut(s)	477, 2410, 2521, 2539
BspT107I	GGYRCC	2 cut(s)	46, 1018
BspTNI	GGTCTC	1 cut(s)	1971
BsrDI	GCAATG	2 cut(s)	1137, 1333
BsrFI	RCCGGY	4 cut(s)	49, 536, 1021, 1309
BsrI	ACTGG	6 cut(s)	1058, 1661, 1781, 2044, 2738, 3197
BssAI	RCCGGY	4 cut(s)	49, 536, 1021, 1309
BssECI	CCNNGG	6 cut(s)	353, 791, 1014, 1801, 1932, 3004
BssNI	GRCGYC	4 cut(s)	47, 211, 1019, 1559
BssSI	CACGAG	3 cut(s)	414, 491, 1287
BssT1I	CCWWGG	3 cut(s)	353, 1932, 3004
Bst2BI	CACGAG	3 cut(s)	414, 491, 1287
Bst2UI	CCWGG	2 cut(s)	1696, 1802
Bst4CI	ACNGT	4 cut(s)	1212, 2005, 2237, 2424
Bst6I	CTCTTC	5 cut(s)	1427, 2202, 2523, 2568, 2928
BstACI	GRCGYC	4 cut(s)	47, 211, 1019, 1559
BstBAI	YACGTR	1 cut(s)	333
BstBI	TTCGAA	4 cut(s)	477, 2410, 2521, 2539
BstDEI	CTNAG	9 cut(s)	846, 1224, 1833, 2065, 2082, 2510, 2598, 2679, 2760
BstDSI	CCRYGG	2 cut(s)	353, 1932
BstENI	CCTNNNNNAGG	1 cut(s)	2031
BstF5I	GGATG	3 cut(s)	1384, 2402, 2884
BstFNI	CGCG	2 cut(s)	388, 439
BstH2I	RGCGCY	2 cut(s)	50, 1022
BstHHI	GCGC	4 cut(s)	49, 1021, 2200, 2497
BstMAI	GTCTC	5 cut(s)	202, 977, 1467, 1971, 2085
BstMCI	CGRYCG	1 cut(s)	537
BstNI	CCWGG	2 cut(s)	1696, 1802
BstNSI	RCATGY	1 cut(s)	3093
BstSCI	CCNGG	4 cut(s)	247, 1014, 1694, 1800
BstSFI	CTRYAG	2 cut(s)	1752, 2790
BstUI	CGCG	2 cut(s)	388, 439
BstV2I	GAAGAC	6 cut(s)	446, 1186, 1545, 1677, 2247, 2561
BstXI	CCANNNNNNTGG	2 cut(s)	1174, 1899
BsuRI	GGCC	2 cut(s)	1699, 1800
BtgI	CCRYGG	2 cut(s)	353, 1932
BtgZI	GCGATG	2 cut(s)	792, 2960
BtrI	CACGTC	1 cut(s)	303
BtsCI	GGATG	3 cut(s)	1384, 2402, 2884
BtsI	GCAGTG	2 cut(s)	1761, 3135
BtsIMutI	CAGTG	6 cut(s)	1668, 1761, 2037, 2242, 2745, 3135
BveI	ACCTGC	1 cut(s)	1539
CaiI	CAGNNNCTG	2 cut(s)	1093, 1807
CciI	TCATGA	1 cut(s)	1921
CfoI	GCGC	4 cut(s)	49, 1021, 2200, 2497
Cfr10I	RCCGGY	4 cut(s)	49, 536, 1021, 1309
Cfr13I	GGNCC	5 cut(s)	24, 245, 410, 707, 1798
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	6 cut(s)	62, 648, 654, 889, 2233, 2861
CviQI	GTAC	6 cut(s)	62, 648, 654, 889, 2233, 2861
DdeI	CTNAG	9 cut(s)	846, 1224, 1833, 2065, 2082, 2510, 2598, 2679, 2760
DinI	GGCGCC	2 cut(s)	48, 1020
Eam1104I	CTCTTC	5 cut(s)	1427, 2202, 2523, 2568, 2928
EarI	CTCTTC	5 cut(s)	1427, 2202, 2523, 2568, 2928
EciI	GGCGGA	1 cut(s)	1809
Ecl136II	GAGCTC	1 cut(s)	2676
Eco130I	CCWWGG	3 cut(s)	353, 1932, 3004
Eco24I	GRGCYC	3 cut(s)	232, 340, 2678
Eco31I	GGTCTC	1 cut(s)	1971
Eco47I	GGWCC	4 cut(s)	24, 245, 410, 707
Eco53kI	GAGCTC	1 cut(s)	2676
Eco57I	CTGAAG	3 cut(s)	1664, 1907, 2226
Eco72I	CACGTG	1 cut(s)	333
Eco88I	CYCGRG	2 cut(s)	20, 1409
EcoICRI	GAGCTC	1 cut(s)	2676
EcoNI	CCTNNNNNAGG	1 cut(s)	2031
EcoO109I	RGGNCCY	2 cut(s)	24, 410
EcoRII	CCWGG	2 cut(s)	1694, 1800
EcoT14I	CCWWGG	3 cut(s)	353, 1932, 3004
EcoT22I	ATGCAT	1 cut(s)	2331
EcoT38I	GRGCYC	3 cut(s)	232, 340, 2678
EgeI	GGCGCC	2 cut(s)	48, 1020
EheI	GGCGCC	2 cut(s)	48, 1020
ErhI	CCWWGG	3 cut(s)	353, 1932, 3004
Esp3I	CGTCTC	2 cut(s)	202, 1467
FalI	AAGNNNNNCTT	4 cut(s)	2118, 2150, 3226, 3258
FaqI	GGGAC	7 cut(s)	20, 37, 423, 1525, 1818, 1916, 1955
FauI	CCCGC	2 cut(s)	399, 432
FbaI	TGATCA	1 cut(s)	3082
FokI	GGATG	3 cut(s)	1391, 2409, 2891
FriOI	GRGCYC	3 cut(s)	232, 340, 2678
FspI	TGCGCA	1 cut(s)	2496
GlaI	GCGC	4 cut(s)	48, 1020, 2199, 2496
GsuI	CTGGAG	2 cut(s)	607, 1041
HaeII	RGCGCY	2 cut(s)	50, 1022
HaeIII	GGCC	2 cut(s)	1699, 1800
HgaI	GACGC	1 cut(s)	219
HhaI	GCGC	4 cut(s)	49, 1021, 2200, 2497
Hin1I	GRCGYC	4 cut(s)	47, 211, 1019, 1559
Hin6I	GCGC	4 cut(s)	47, 1019, 2198, 2495
HinP1I	GCGC	4 cut(s)	47, 1019, 2198, 2495
HincII	GTYRAC	3 cut(s)	868, 1307, 1321
HindII	GTYRAC	3 cut(s)	868, 1307, 1321
HindIII	AAGCTT	2 cut(s)	2183, 2499
HphI	GGTGA	6 cut(s)	769, 1891, 1921, 2980, 3150, 3159
Hpy166II	GTNNAC	5 cut(s)	868, 1307, 1321, 1372, 1912
Hpy8I	GTNNAC	5 cut(s)	868, 1307, 1321, 1372, 1912
Hpy99I	CGWCG	4 cut(s)	140, 219, 566, 1561
HpyAV	CCTTC	9 cut(s)	236, 1438, 1502, 1577, 1789, 2707, 2773, 2869, 3118
HpyCH4III	ACNGT	4 cut(s)	1212, 2005, 2237, 2424
HpyCH4IV	ACGT	6 cut(s)	302, 332, 837, 864, 905, 1559
HpyF3I	CTNAG	9 cut(s)	846, 1224, 1833, 2065, 2082, 2510, 2598, 2679, 2760
HpySE526I	ACGT	6 cut(s)	302, 332, 837, 864, 905, 1559
Hsp92I	GRCGYC	4 cut(s)	47, 211, 1019, 1559
HspAI	GCGC	4 cut(s)	47, 1019, 2198, 2495
KasI	GGCGCC	2 cut(s)	46, 1018
Kpn2I	TCCGGA	2 cut(s)	232, 709
KroI	GCCGGC	2 cut(s)	49, 1021
KroNI	GCCGGC	2 cut(s)	51, 1023
Ksp22I	TGATCA	1 cut(s)	3082
LguI	GCTCTTC	1 cut(s)	2928
LweI	GCATC	5 cut(s)	2070, 2251, 2387, 2760, 2914
MaeII	ACGT	6 cut(s)	302, 332, 837, 864, 905, 1559
MaeIII	GTNAC	6 cut(s)	362, 841, 1271, 2049, 2660, 3130
MfeI	CAATTG	2 cut(s)	2094, 2385
MhlI	GDGCHC	3 cut(s)	232, 340, 2678
Mly113I	GGCGCC	2 cut(s)	47, 1019
MlyI	GAGTC	8 cut(s)	42, 455, 973, 1073, 2310, 2381, 2818, 3158
MmeI	TCCRAC	5 cut(s)	405, 585, 1034, 2386, 2725
Mph1103I	ATGCAT	1 cut(s)	2331
MreI	CGCCGGCG	1 cut(s)	49
MroI	TCCGGA	2 cut(s)	232, 709
MroNI	GCCGGC	2 cut(s)	49, 1021
MroXI	GAANNNNTTC	4 cut(s)	1436, 2130, 2445, 3238
MseI	TTAA	5 cut(s)	320, 1004, 1650, 2162, 3060
MslI	CAYNNNNRTG	4 cut(s)	295, 301, 1175, 2343
MspA1I	CMGCKG	5 cut(s)	627, 1099, 1105, 1154, 1245
MspR9I	CCNGG	4 cut(s)	249, 1016, 1696, 1802
MunI	CAATTG	2 cut(s)	2094, 2385
Mva1269I	GAATGC	4 cut(s)	1927, 2273, 2476, 2497
MvaI	CCWGG	2 cut(s)	1696, 1802
MvnI	CGCG	2 cut(s)	388, 439
NaeI	GCCGGC	2 cut(s)	51, 1023
NarI	GGCGCC	2 cut(s)	47, 1019
NciI	CCSGG	2 cut(s)	249, 1016
NcoI	CCATGG	2 cut(s)	353, 1932
NgoMIV	GCCGGC	2 cut(s)	49, 1021
NheI	GCTAGC	1 cut(s)	107
NmeAIII	GCCGAG	3 cut(s)	23, 611, 816
NmuCI	GTSAC	3 cut(s)	362, 2049, 3130
NsbI	TGCGCA	1 cut(s)	2496
NsiI	ATGCAT	1 cut(s)	2331
NspI	RCATGY	1 cut(s)	3093
NspV	TTCGAA	4 cut(s)	477, 2410, 2521, 2539
OliI	CACNNNNGTG	1 cut(s)	1175
PaeI	GCATGC	1 cut(s)	3093
PaeR7I	CTCGAG	1 cut(s)	1409
PagI	TCATGA	1 cut(s)	1921
PciSI	GCTCTTC	1 cut(s)	2928
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PctI	GAATGC	4 cut(s)	1927, 2273, 2476, 2497
PdiI	GCCGGC	2 cut(s)	51, 1023
PdmI	GAANNNNTTC	4 cut(s)	1436, 2130, 2445, 3238
PfeI	GAWTC	5 cut(s)	342, 479, 521, 1351, 2446
PflMI	CCANNNNNTGG	2 cut(s)	1938, 2744
PleI	GAGTC	8 cut(s)	41, 454, 972, 1072, 2310, 2380, 2818, 3158
PluTI	GGCGCC	2 cut(s)	50, 1022
PmaCI	CACGTG	1 cut(s)	333
PmlI	CACGTG	1 cut(s)	333
PpsI	GAGTC	8 cut(s)	41, 454, 972, 1072, 2310, 2380, 2818, 3158
Ppu21I	YACGTR	1 cut(s)	333
PpuMI	RGGWCCY	2 cut(s)	24, 410
PshBI	ATTAAT	2 cut(s)	320, 1650
PsiI	TTATAA	1 cut(s)	2102
Psp124BI	GAGCTC	1 cut(s)	2678
Psp5II	RGGWCCY	2 cut(s)	24, 410
Psp6I	CCWGG	2 cut(s)	1694, 1800
PspCI	CACGTG	1 cut(s)	333
PspGI	CCWGG	2 cut(s)	1694, 1800
PspPI	GGNCC	5 cut(s)	24, 245, 410, 707, 1798
PspPPI	RGGWCCY	2 cut(s)	24, 410
PspXI	VCTCGAGB	1 cut(s)	1409
PstI	CTGCAG	1 cut(s)	1756
PstNI	CAGNNNCTG	2 cut(s)	1093, 1807
RsaI	GTAC	6 cut(s)	63, 649, 655, 890, 2234, 2862
RsaNI	GTAC	6 cut(s)	62, 648, 654, 889, 2233, 2861
RseI	CAYNNNNRTG	4 cut(s)	295, 301, 1175, 2343
SacI	GAGCTC	1 cut(s)	2678
SapI	GCTCTTC	1 cut(s)	2928
SaqAI	TTAA	5 cut(s)	320, 1004, 1650, 2162, 3060
Sau96I	GGNCC	5 cut(s)	24, 245, 410, 707, 1798
ScaI	AGTACT	3 cut(s)	649, 655, 2862
SchI	GAGTC	8 cut(s)	42, 455, 973, 1073, 2310, 2381, 2818, 3158
ScrFI	CCNGG	4 cut(s)	249, 1016, 1696, 1802
SduI	GDGCHC	3 cut(s)	232, 340, 2678
SfaNI	GCATC	5 cut(s)	2070, 2251, 2387, 2760, 2914
SfcI	CTRYAG	2 cut(s)	1752, 2790
SfoI	GGCGCC	2 cut(s)	48, 1020
Sfr274I	CTCGAG	1 cut(s)	1409
SfuI	TTCGAA	4 cut(s)	477, 2410, 2521, 2539
SgrAI	CRCCGGYG	1 cut(s)	49
SinI	GGWCC	4 cut(s)	24, 245, 410, 707
SlaI	CTCGAG	1 cut(s)	1409
SmiMI	CAYNNNNRTG	4 cut(s)	295, 301, 1175, 2343
SmlI	CTYRAG	6 cut(s)	799, 1355, 1409, 2366, 2450, 2635
SmoI	CTYRAG	6 cut(s)	799, 1355, 1409, 2366, 2450, 2635
SpeI	ACTAGT	2 cut(s)	650, 2857
SphI	GCATGC	1 cut(s)	3093
SspDI	GGCGCC	2 cut(s)	46, 1018
SspI	AATATT	3 cut(s)	393, 1468, 2999
SstI	GAGCTC	1 cut(s)	2678
StyD4I	CCNGG	4 cut(s)	247, 1014, 1694, 1800
StyI	CCWWGG	3 cut(s)	353, 1932, 3004
TaaI	ACNGT	4 cut(s)	1212, 2005, 2237, 2424
TaiI	ACGT	6 cut(s)	305, 335, 840, 867, 908, 1562
TaqII	GACCGA	1 cut(s)	584
TatI	WGTACW	4 cut(s)	61, 647, 653, 2860
TfiI	GAWTC	5 cut(s)	342, 479, 521, 1351, 2446
Tru1I	TTAA	5 cut(s)	320, 1004, 1650, 2162, 3060
Tru9I	TTAA	5 cut(s)	320, 1004, 1650, 2162, 3060
TscAI	CASTG	6 cut(s)	1668, 1761, 2044, 2242, 2745, 3135
TseFI	GTSAC	3 cut(s)	362, 2049, 3130
Tsp45I	GTSAC	3 cut(s)	362, 2049, 3130
TspGWI	ACGGA	5 cut(s)	88, 124, 205, 676, 3008
TspRI	CASTG	6 cut(s)	1668, 1761, 2044, 2242, 2745, 3135
Van91I	CCANNNNNTGG	2 cut(s)	1938, 2744
VpaK11BI	GGWCC	4 cut(s)	24, 245, 410, 707
VspI	ATTAAT	2 cut(s)	320, 1650
XagI	CCTNNNNNAGG	1 cut(s)	2031
XapI	RAATTY	4 cut(s)	2055, 2223, 2975, 3211
XbaI	TCTAGA	2 cut(s)	2483, 3230
XceI	RCATGY	1 cut(s)	3093
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1174
XhoI	CTCGAG	1 cut(s)	1409
XmnI	GAANNNNTTC	4 cut(s)	1436, 2130, 2445, 3238
ZraI	GACGTC	1 cut(s)	1560
ZrmI	AGTACT	3 cut(s)	649, 655, 2862
Zsp2I	ATGCAT	1 cut(s)	2331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.