Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003211

Physical Location & Seq

Genomic Coordinates Forward (+)

20544350 .. 20546482

Gene Structure 2133 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g16140.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGCCACAGTCCAATGGAACAGTACTTACCGAGACAATTGCAGCAGCAGCTGTAGCTGTAGCCACGCTTTCTATTGCTGGAATCTTGTTCTTCCTCTACAGATTCCTCGTTGCTCGCCGCCGCACAAAAGGCAAGGAAAATGGGAGTTTTCGCCGCAAAGAAGTTGAGATGAATCGCGAGGAGTTTAGGCAATGTGGTGGGAATGTGAAGGGGTTGATTGTTATTGGTAAAAAACCATTTTCTCTACATCCTCCAAGATCTCGAAGAACAATTTCACCTATAGTGTTGGAAAAGCATGCTCTAGAATCACAGCCTCCTCCACCACCCCAGCTAATCTGCGCTGCCACCACCTCCACCATCACCATCACCACCACCACTACCACCACCGCCGCCACCTATTGTGGTGGTTCGGCTTTGTCACTTAAACCGCCGACTCTGCCTAAAGGCAGAGCAAGCAACAAGAGCAGGGAAGAGGCTTCAACCGGGGAGGAGGGCTTAAAAGCAATCGGTGGCGGGCAAACGAAGCTAAAGCCGCTGCACTGGGATAAGGTTATGGCAGCTGTTCATCATTCAATGCTTATGGAAAATCTCCTTGGATATTCCACGATTAAAAACCAATCCTCTGAGAGAAATAACCACTTGACTTCAGCTTCAAGCAAGCCAAACTCTTGCCCCAACACCTCAGGTTTCATCCTAGATACTCGAAAGTCTCTGAACACCACGATAGTGCTAAGGTCTCTCGCAATCTCTCGAAAAGAAATTGTAAATGCTCTCCTTGATGGACAAGGACTTGGTGCTGCTGCACTAGAAAAGCTCACAAAAATTTCATCAACCAAAGAGGAAGAAGCAAAATTCCTCCAATTCAATGGAAACCCTAGTAAACTAGCACTTACTGAATCTTTCCTCTACCACATTTTGAAGGCTGTTCCTTCGGCATTCACACTCCTTCACCTCAAGGAGTCCTTGCAAACACTTGAAATTGGGTGCAAGGAGCTAAGAACCCACGGGCTCTTGCAATTCTCAAAGCCGCCAATAGAGGCAATCTCAATCCGAGGGAAGAGGCTTTGTGATAAATCAAAACCGCAGCCTTGGAAGAAACAGTACTCAAAGAAAGAACGGCAATGCCGAGAGAGGAGGGTTATGGAGCTTGTGAGGAAAATAACCGAGTACTACCAAGCAGGAGCTTCGAGAGACAAAGGAGACATGGTTGCTCTTGTTTGTGCTGAAACTACAGAAGAAGAGTTCTACGAAAGCGAAAGTGGAAGGATCATGGTCACCTCCACTGTAACCTTCAAGCATAACATCAAAGAAGTTGATGAACTTTCCACTCCCATATTATTTCAGATGTGTCATGGACATCTTCCGGTGAATCAGAAAATGAATTCTGAACCTGATGTAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005522 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0010638 GO:0016020 GO:0016043 GO:0016049 GO:0030029 GO:0030036 GO:0030054 GO:0030832 GO:0030833 GO:0030838 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0040007 GO:0043254 GO:0044087 GO:0044089 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0060560 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

468

Amino Acids

51.58

Weight (kDa)

9.57

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24150 AT1G59910 AT1G70140
fragaria_vesca	FvH4_4g35240 FvH4_5g16231
malus_domestica	MD06G1182500.v1.1 MD13G1085100.v1.1 MD14G1188500.v1.1 MD16G1084300.v1.1
prunus_persica	Prupe.1G261700_v2.0.a1 Prupe.5G180600_v2.0.a1
pyrus_communis	pycom06g16140 pycom13g07360
rosa_chinensis	RchiOBHm_Chr4g0444841 RchiOBHm_Chr7g0179861
rosa_laevigata	RLG00000005317 RLG00000005796
rosa_multiflora	Rmu_sc0000096.1_g000028 Rmu_sc0001754.1_g000001 Rmu_sc0006845.1_g000009 Rmu_sc0031375.1_g000001 Rmu_sc0034891.1_g000002 Rmu_sc0034892.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273390 Rroxscaffold_5G00385330
rosa_rugosa	Rorug04G0355500 Rorug06G0428800
rosa_samantha	Rh4AG417000 Rh4BG428800 Rh4CG443600 Rh4DG424800 Rh7AG028700 Rh7BG027900 Rh7CG029600 Rh7DG029000
rosa_wichuraiana	Rw4G035740 Rw7G002300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	177
AclWI	GGATC	1 cut(s)	1274
AcsI	RAATTY	3 cut(s)	822, 851, 1381
AcuI	CTGAAG	1 cut(s)	630
AfaI	GTAC	3 cut(s)	24, 1103, 1169
AgsI	TTSAA	7 cut(s)	480, 573, 654, 865, 919, 977, 1294
AjuI	GAANNNNNNNTTGG	2 cut(s)	576, 608
AleI	CACNNNNGTG	1 cut(s)	725
Alw26I	GTCTC	5 cut(s)	26, 714, 741, 1185, 1194
AlwI	GGATC	1 cut(s)	1274
AlwNI	CAGNNNCTG	1 cut(s)	50
ApeKI	GCWGC	9 cut(s)	41, 44, 47, 341, 535, 557, 797, 800, 1084
ApoI	RAATTY	3 cut(s)	822, 851, 1381
Asp700I	GAANNNNTTC	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	341
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	6 cut(s)	267, 352, 358, 941, 1267, 1378
AxyI	CCTNAGG	1 cut(s)	682
BanII	GRGCYC	1 cut(s)	1011
BarI	GAAGNNNNNNTAC	2 cut(s)	1085, 1117
BbvI	GCAGC	9 cut(s)	53, 56, 59, 328, 522, 569, 784, 787, 1096
BccI	CCATC	3 cut(s)	365, 371, 773
BceAI	ACGGC	1 cut(s)	1133
BcgI	CGANNNNNNTGC	4 cut(s)	20, 54, 1167, 1201
BcnI	CCSGG	1 cut(s)	484
BcoDI	GTCTC	5 cut(s)	26, 714, 741, 1185, 1194
BfaI	CTAG	5 cut(s)	302, 695, 806, 876, 884
BfmI	CTRYAG	5 cut(s)	51, 57, 97, 279, 1230
BglII	AGATCT	1 cut(s)	257
BmcAI	AGTACT	3 cut(s)	24, 1103, 1169
Bme1390I	CCNGG	1 cut(s)	484
BmrFI	CCNGG	1 cut(s)	484
BmrI	ACTGGG	1 cut(s)	550
BmuI	ACTGGG	1 cut(s)	550
BplI	GAGNNNNNCTC	2 cut(s)	1028, 1060
Bpu10I	CCTNAGC	1 cut(s)	731
BpuEI	CTTGAG	1 cut(s)	938
BpuMI	CCSGG	1 cut(s)	484
BsaI	GGTCTC	1 cut(s)	741
BsaJI	CCNNGG	5 cut(s)	483, 592, 1003, 1051, 1088
BsaWI	WCCGGW	1 cut(s)	1363
BsaXI	ACNNNNNCTCC	2 cut(s)	1191, 1221
Bse1I	ACTGG	1 cut(s)	545
Bse21I	CCTNAGG	1 cut(s)	682
Bse3DI	GCAATG	2 cut(s)	197, 1127
BseDI	CCNNGG	5 cut(s)	483, 592, 1003, 1051, 1088
BseGI	GGATG	2 cut(s)	247, 690
BseMI	GCAATG	2 cut(s)	197, 1127
BseMII	CTCAG	2 cut(s)	615, 696
BseNI	ACTGG	1 cut(s)	545
BseRI	GAGGAG	4 cut(s)	194, 306, 503, 1147
BseXI	GCAGC	9 cut(s)	53, 56, 59, 328, 522, 569, 784, 787, 1096
BseYI	CCCAGC	1 cut(s)	327
BsgI	GTGCAG	2 cut(s)	521, 786
Bsh1236I	CGCG	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	483, 1364
BsmAI	GTCTC	5 cut(s)	26, 714, 741, 1185, 1194
BsmI	GAATGC	1 cut(s)	935
Bso31I	GGTCTC	1 cut(s)	741
Bsp1286I	GDGCHC	1 cut(s)	1011
Bsp143I	GATC	2 cut(s)	257, 1266
Bsp68I	TCGCGA	1 cut(s)	177
BspCNI	CTCAG	2 cut(s)	616, 695
BspFNI	CGCG	1 cut(s)	177
BspPI	GGATC	1 cut(s)	1274
BspTNI	GGTCTC	1 cut(s)	741
BsrDI	GCAATG	2 cut(s)	197, 1127
BsrI	ACTGG	1 cut(s)	545
BssECI	CCNNGG	5 cut(s)	483, 592, 1003, 1051, 1088
BssMI	GATC	2 cut(s)	257, 1266
BssT1I	CCWWGG	2 cut(s)	592, 1088
Bst4CI	ACNGT	4 cut(s)	9, 22, 1101, 1285
Bst6I	CTCTTC	3 cut(s)	465, 1052, 1233
BstC8I	GCNNGC	5 cut(s)	115, 297, 454, 515, 659
BstDEI	CTNAG	4 cut(s)	624, 682, 731, 995
BstDSI	CCRYGG	1 cut(s)	1003
BstEII	GGTNACC	1 cut(s)	1273
BstF5I	GGATG	2 cut(s)	247, 690
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	2 cut(s)	260, 1269
BstMAI	GTCTC	5 cut(s)	26, 714, 741, 1185, 1194
BstMBI	GATC	2 cut(s)	257, 1266
BstMWI	GCNNNNNNNGC	8 cut(s)	47, 53, 129, 436, 453, 462, 523, 532
BstNSI	RCATGY	1 cut(s)	299
BstPI	GGTNACC	1 cut(s)	1273
BstSCI	CCNGG	1 cut(s)	482
BstSFI	CTRYAG	5 cut(s)	51, 57, 97, 279, 1230
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	9 cut(s)	53, 56, 59, 328, 522, 569, 784, 787, 1096
BstX2I	RGATCY	1 cut(s)	257
BstXI	CCANNNNNNTGG	1 cut(s)	866
BstYI	RGATCY	1 cut(s)	257
Bsu36I	CCTNAGG	1 cut(s)	682
BtgI	CCRYGG	1 cut(s)	1003
BtsCI	GGATG	2 cut(s)	247, 690
BtsIMutI	CAGTG	2 cut(s)	538, 1281
BtuMI	TCGCGA	1 cut(s)	177
Cac8I	GCNNGC	5 cut(s)	115, 297, 454, 515, 659
CaiI	CAGNNNCTG	1 cut(s)	50
CfoI	GCGC	1 cut(s)	341
Csp6I	GTAC	3 cut(s)	23, 1102, 1168
CviAII	CATG	4 cut(s)	296, 1204, 1270, 1352
CviQI	GTAC	3 cut(s)	23, 1102, 1168
DdeI	CTNAG	4 cut(s)	624, 682, 731, 995
DpnI	GATC	2 cut(s)	259, 1268
DpnII	GATC	2 cut(s)	257, 1266
Eam1104I	CTCTTC	3 cut(s)	465, 1052, 1233
EarI	CTCTTC	3 cut(s)	465, 1052, 1233
Eco130I	CCWWGG	2 cut(s)	592, 1088
Eco24I	GRGCYC	1 cut(s)	1011
Eco31I	GGTCTC	1 cut(s)	741
Eco57I	CTGAAG	1 cut(s)	630
Eco81I	CCTNAGG	1 cut(s)	682
Eco91I	GGTNACC	1 cut(s)	1273
EcoO65I	GGTNACC	1 cut(s)	1273
EcoRI	GAATTC	1 cut(s)	1381
EcoT14I	CCWWGG	2 cut(s)	592, 1088
EcoT38I	GRGCYC	1 cut(s)	1011
ErhI	CCWWGG	2 cut(s)	592, 1088
FaeI	CATG	4 cut(s)	299, 1207, 1273, 1355
FalI	AAGNNNNNCTT	2 cut(s)	947, 979
FatI	CATG	4 cut(s)	295, 1203, 1269, 1351
FauI	CCCGC	1 cut(s)	506
FokI	GGATG	2 cut(s)	234, 677
FriOI	GRGCYC	1 cut(s)	1011
FspBI	CTAG	5 cut(s)	302, 695, 806, 876, 884
GlaI	GCGC	1 cut(s)	340
GsaI	CCCAGC	1 cut(s)	331
HapII	CCGG	2 cut(s)	483, 1364
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	4 cut(s)	299, 1207, 1273, 1355
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HinfI	GANTC	8 cut(s)	81, 102, 172, 305, 433, 896, 959, 1369
HpaII	CCGG	2 cut(s)	483, 1364
HphI	GGTGA	6 cut(s)	267, 352, 358, 941, 1267, 1378
Hpy166II	GTNNAC	1 cut(s)	881
Hpy188I	TCNGA	6 cut(s)	625, 714, 1052, 1344, 1374, 1387
Hpy188III	TCNNGA	5 cut(s)	176, 261, 302, 750, 1188
Hpy8I	GTNNAC	1 cut(s)	881
HpyAV	CCTTC	6 cut(s)	202, 913, 939, 956, 1257, 1300
HpyCH4III	ACNGT	4 cut(s)	9, 22, 1101, 1285
HpyCH4V	TGCA	6 cut(s)	41, 538, 803, 967, 987, 1015
HpyF10VI	GCNNNNNNNGC	8 cut(s)	47, 53, 129, 436, 453, 462, 523, 532
HpyF3I	CTNAG	4 cut(s)	624, 682, 731, 995
Hsp92II	CATG	4 cut(s)	299, 1207, 1273, 1355
HspAI	GCGC	1 cut(s)	339
Kzo9I	GATC	2 cut(s)	257, 1266
LmnI	GCTCC	3 cut(s)	991, 1144, 1181
LpnPI	CCDG	8 cut(s)	63, 341, 451, 496, 526, 669, 1164, 1377
Lsp1109I	GCAGC	9 cut(s)	53, 56, 59, 328, 522, 569, 784, 787, 1096
MaeI	CTAG	5 cut(s)	302, 695, 806, 876, 884
MaeIII	GTNAC	4 cut(s)	417, 1273, 1285, 1396
MalI	GATC	2 cut(s)	259, 1268
MboI	GATC	2 cut(s)	257, 1266
MboII	GAAGA	9 cut(s)	82, 276, 482, 854, 1069, 1105, 1247, 1250, 1352
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	1 cut(s)	257
MhlI	GDGCHC	1 cut(s)	1011
MluCI	AATT	9 cut(s)	36, 270, 759, 822, 851, 860, 978, 1016, 1381
MlyI	GAGTC	2 cut(s)	427, 968
MmeI	TCCRAC	1 cut(s)	267
MroXI	GAANNNNTTC	1 cut(s)	271
MseI	TTAA	3 cut(s)	423, 497, 609
MslI	CAYNNNNRTG	1 cut(s)	725
MspA1I	CMGCKG	3 cut(s)	50, 535, 560
MspI	CCGG	2 cut(s)	483, 1364
MspR9I	CCNGG	1 cut(s)	484
MunI	CAATTG	1 cut(s)	36
Mva1269I	GAATGC	1 cut(s)	935
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	8 cut(s)	47, 53, 129, 436, 453, 462, 523, 532
NciI	CCSGG	1 cut(s)	484
NdeII	GATC	2 cut(s)	257, 1266
NlaIII	CATG	4 cut(s)	299, 1207, 1273, 1355
NmeAIII	GCCGAG	1 cut(s)	1151
NmuCI	GTSAC	2 cut(s)	417, 1273
NruI	TCGCGA	1 cut(s)	177
NspI	RCATGY	1 cut(s)	299
OliI	CACNNNNGTG	1 cut(s)	725
PaeI	GCATGC	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	1123
PctI	GAATGC	1 cut(s)	935
PdmI	GAANNNNTTC	1 cut(s)	271
PfeI	GAWTC	6 cut(s)	81, 102, 172, 305, 896, 1369
PleI	GAGTC	2 cut(s)	427, 967
PpsI	GAGTC	2 cut(s)	427, 967
PspEI	GGTNACC	1 cut(s)	1273
PspFI	CCCAGC	1 cut(s)	327
PsrI	GAACNNNNNNTAC	2 cut(s)	10, 42
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	257
PvuII	CAGCTG	2 cut(s)	50, 560
RruI	TCGCGA	1 cut(s)	177
RsaI	GTAC	3 cut(s)	24, 1103, 1169
RsaNI	GTAC	3 cut(s)	23, 1102, 1168
RseI	CAYNNNNRTG	1 cut(s)	725
SaqAI	TTAA	3 cut(s)	423, 497, 609
Sau3AI	GATC	2 cut(s)	257, 1266
ScaI	AGTACT	3 cut(s)	24, 1103, 1169
SchI	GAGTC	2 cut(s)	427, 968
ScrFI	CCNGG	1 cut(s)	484
SduI	GDGCHC	1 cut(s)	1011
SfcI	CTRYAG	5 cut(s)	51, 57, 97, 279, 1230
SmiMI	CAYNNNNRTG	1 cut(s)	725
SmlI	CTYRAG	1 cut(s)	953
SmoI	CTYRAG	1 cut(s)	953
SphI	GCATGC	1 cut(s)	299
Sse9I	AATT	9 cut(s)	36, 270, 759, 822, 851, 860, 978, 1016, 1381
SspMI	CTAG	5 cut(s)	302, 695, 806, 876, 884
StyD4I	CCNGG	1 cut(s)	482
StyI	CCWWGG	2 cut(s)	592, 1088
TaaI	ACNGT	4 cut(s)	9, 22, 1101, 1285
TaqI	TCGA	4 cut(s)	262, 703, 751, 1187
TasI	AATT	9 cut(s)	36, 270, 759, 822, 851, 860, 978, 1016, 1381
TatI	WGTACW	3 cut(s)	22, 1101, 1167
TauI	GCSGC	6 cut(s)	120, 123, 156, 392, 535, 1030
TfiI	GAWTC	6 cut(s)	81, 102, 172, 305, 896, 1369
Tru1I	TTAA	3 cut(s)	423, 497, 609
Tru9I	TTAA	3 cut(s)	423, 497, 609
TscAI	CASTG	2 cut(s)	545, 1288
TseFI	GTSAC	2 cut(s)	417, 1273
TseI	GCWGC	9 cut(s)	41, 44, 47, 341, 535, 557, 797, 800, 1084
Tsp45I	GTSAC	2 cut(s)	417, 1273
TspDTI	ATGAA	6 cut(s)	185, 554, 679, 816, 1332, 1394
TspRI	CASTG	2 cut(s)	545, 1288
XapI	RAATTY	3 cut(s)	822, 851, 1381
XbaI	TCTAGA	1 cut(s)	301
XceI	RCATGY	1 cut(s)	299
XmnI	GAANNNNTTC	1 cut(s)	271
XspI	CTAG	5 cut(s)	302, 695, 806, 876, 884
ZrmI	AGTACT	3 cut(s)	24, 1103, 1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.