Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003211

Physical Location & Seq

Genomic Coordinates Reverse (-)

4880290 .. 4881002

Gene Structure 713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCTGCCAGGAATCGGCCATGGATGCTCTCTTGTTTTTTCACTTATGGTTTTTCAATTACTTTTATTATTTTTGTAAATGTAATTCCTTCTTGTCATGGCCAATCCCCTCAAAATATTGAAACTGTCTATCCGTTTACGGCTCCGTCACCCCAAATCCGACCTTCATTGCCTCCCAAAGACTCTCCGCCGCAACCGGAATCACAGCCGCAGCCGGTGCCTTTGCCGCCAAGAAAGTCTGCGTCAAAGAGTCAGATTGCGAAGGCTGCGGCGATCACTGCAGCCTCCACTCTGGTGATTTCCGGGCTGGTTTTCTTTTTTGTGCATAGGTACCTTGTTGCGCGGCGCAAGAGAATTAATGGCGGTAGTTATGATGATGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTGGAGGTTTGCAAGGAGGCCAGCCTCAGCCGGGGCCTCCTGTAGCGGTTCAGAGTGAGTTTTCAAGATATGATGGGAATCTCAAGGGGTTCATTGTTGATGAGAACGGTCTGGACGTGCTTTACTGGAAGAAGCTCGAAGCGATAAACTCGAAGAAGAGTTTTCGAAAGGAGTTGTTTCGAAAAGATGGTGAGGAAGACGAAGGGAGTAGCAGAAGAAGAAGGCGCGAGCCCATACAGGAAGTTCCTCTAATTAGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005522 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0010638 GO:0016020 GO:0016043 GO:0016049 GO:0030029 GO:0030036 GO:0030054 GO:0030832 GO:0030833 GO:0030838 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0040007 GO:0043254 GO:0044087 GO:0044089 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0060560 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

223

Amino Acids

24.26

Weight (kDa)

9.62

Isoelectric Point (pI)

84.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24150 AT1G59910 AT1G70140
fragaria_vesca	FvH4_4g35240 FvH4_5g16231
malus_domestica	MD06G1182500.v1.1 MD13G1085100.v1.1 MD14G1188500.v1.1 MD16G1084300.v1.1
prunus_persica	Prupe.1G261700_v2.0.a1 Prupe.5G180600_v2.0.a1
pyrus_communis	pycom06g16140 pycom13g07360
rosa_chinensis	RchiOBHm_Chr4g0444841 RchiOBHm_Chr7g0179861
rosa_laevigata	RLG00000005317 RLG00000005796
rosa_multiflora	Rmu_sc0000096.1_g000028 Rmu_sc0001754.1_g000001 Rmu_sc0006845.1_g000009 Rmu_sc0031375.1_g000001 Rmu_sc0034891.1_g000002 Rmu_sc0034892.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273390 Rroxscaffold_5G00385330
rosa_rugosa	Rorug04G0355500 Rorug06G0428800
rosa_samantha	Rh4AG417000 Rh4BG428800 Rh4CG443600 Rh4DG424800 Rh7AG028700 Rh7BG027900 Rh7CG029600 Rh7DG029000
rosa_wichuraiana	Rw4G035740 Rw7G002300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	330
AccB1I	GGYRCC	2 cut(s)	217, 330
AccII	CGCG	2 cut(s)	343, 633
AciI	CCGC	8 cut(s)	188, 191, 209, 227, 269, 343, 363, 452
AcoI	YGGCCR	2 cut(s)	17, 100
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	15, 437
AgsI	TTSAA	3 cut(s)	57, 122, 471
AjiI	CACGTC	1 cut(s)	523
AjnI	CCWGG	1 cut(s)	8
AleI	CACNNNNGTG	1 cut(s)	293
AluBI	AGCT	1 cut(s)	541
AluI	AGCT	1 cut(s)	541
AoxI	GGCC	4 cut(s)	17, 100, 424, 440
ApeKI	GCWGC	4 cut(s)	5, 211, 266, 281
AseI	ATTAAT	1 cut(s)	357
Asp718I	GGTACC	1 cut(s)	330
AspLEI	GCGC	3 cut(s)	343, 348, 633
AspS9I	GGNCC	1 cut(s)	440
AsuC2I	CCSGG	2 cut(s)	304, 438
AsuHPI	GGTGA	3 cut(s)	141, 307, 608
AsuII	TTCGAA	2 cut(s)	571, 586
BalI	TGGCCA	1 cut(s)	102
BanI	GGYRCC	2 cut(s)	217, 330
BanII	GRGCYC	1 cut(s)	639
BbsI	GAAGAC	1 cut(s)	609
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	3 cut(s)	223, 253, 293
BccI	CCATC	3 cut(s)	371, 473, 587
BceAI	ACGGC	1 cut(s)	156
BciT130I	CCWGG	1 cut(s)	10
BcnI	CCSGG	2 cut(s)	304, 438
BfmI	CTRYAG	2 cut(s)	279, 447
BisI	GCNGC	9 cut(s)	6, 191, 209, 212, 227, 267, 270, 282, 344
BlsI	GCNGC	9 cut(s)	7, 192, 210, 213, 228, 268, 271, 283, 345
Bme1390I	CCNGG	3 cut(s)	10, 304, 438
BmgBI	CACGTC	1 cut(s)	523
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	4 cut(s)	144, 219, 332, 441
BmrFI	CCNGG	3 cut(s)	10, 304, 438
BmsI	GCATC	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	609
Bpu10I	CCTNAGC	1 cut(s)	432
Bpu14I	TTCGAA	2 cut(s)	571, 586
BpuEI	CTTGAG	1 cut(s)	473
BpuMI	CCSGG	2 cut(s)	304, 438
BsaBI	GATNNNNATC	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	20, 437
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 437
Bse118I	RCCGGY	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	536
Bse3DI	GCAATG	1 cut(s)	167
Bse8I	GATNNNNATC	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	2 cut(s)	20, 437
BseGI	GGATG	1 cut(s)	30
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	2 cut(s)	15, 437
BseMI	GCAATG	1 cut(s)	167
BseMII	CTCAG	1 cut(s)	446
BseNI	ACTGG	1 cut(s)	536
BseXI	GCAGC	3 cut(s)	223, 253, 293
Bsh1236I	CGCG	2 cut(s)	343, 633
BshFI	GGCC	4 cut(s)	19, 102, 426, 442
BshNI	GGYRCC	2 cut(s)	217, 330
BsiSI	CCGG	4 cut(s)	197, 215, 303, 437
BslI	CCNNNNNNNGG	2 cut(s)	15, 437
BsnI	GGCC	4 cut(s)	19, 102, 426, 442
Bsp119I	TTCGAA	2 cut(s)	571, 586
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp143I	GATC	1 cut(s)	273
Bsp19I	CCATGG	1 cut(s)	20
BspACI	CCGC	8 cut(s)	188, 191, 209, 227, 269, 343, 363, 452
BspANI	GGCC	4 cut(s)	19, 102, 426, 442
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	2 cut(s)	343, 633
BspLI	GGNNCC	4 cut(s)	144, 219, 332, 441
BspMAI	CTGCAG	1 cut(s)	283
BspT104I	TTCGAA	2 cut(s)	571, 586
BspT107I	GGYRCC	2 cut(s)	217, 330
BsrDI	GCAATG	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	536
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	20, 437
BssMI	GATC	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	2 cut(s)	127, 515
Bst6I	CTCTTC	1 cut(s)	557
BstAPI	GCANNNNNTGC	1 cut(s)	217
BstBI	TTCGAA	2 cut(s)	571, 586
BstC8I	GCNNGC	2 cut(s)	428, 635
BstDEI	CTNAG	1 cut(s)	432
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	30
BstFNI	CGCG	2 cut(s)	343, 633
BstHHI	GCGC	3 cut(s)	343, 348, 633
BstKTI	GATC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 217, 226, 266, 278
BstNI	CCWGG	1 cut(s)	10
BstSCI	CCNGG	3 cut(s)	8, 302, 436
BstSFI	CTRYAG	2 cut(s)	279, 447
BstUI	CGCG	2 cut(s)	343, 633
BstV1I	GCAGC	3 cut(s)	223, 253, 293
BstV2I	GAAGAC	1 cut(s)	609
BsuRI	GGCC	4 cut(s)	19, 102, 426, 442
BtgI	CCRYGG	1 cut(s)	20
BtrI	CACGTC	1 cut(s)	523
BtsCI	GGATG	1 cut(s)	30
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	2 cut(s)	428, 635
CfoI	GCGC	3 cut(s)	343, 348, 633
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	440
CseI	GACGC	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	2 cut(s)	21, 98
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
EaeI	YGGCCR	2 cut(s)	17, 100
Eam1104I	CTCTTC	1 cut(s)	557
EarI	CTCTTC	1 cut(s)	557
EciI	GGCGGA	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	639
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	20
EcoT38I	GRGCYC	1 cut(s)	639
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	2 cut(s)	24, 101
FaiI	YATR	7 cut(s)	22, 48, 99, 327, 372, 477, 641
FatI	CATG	2 cut(s)	20, 97
Fnu4HI	GCNGC	9 cut(s)	6, 191, 209, 212, 227, 267, 270, 282, 344
FokI	GGATG	1 cut(s)	37
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	9 cut(s)	6, 191, 209, 212, 227, 267, 270, 282, 344
GlaI	GCGC	3 cut(s)	342, 347, 632
GluI	GCNGC	9 cut(s)	6, 191, 209, 212, 227, 267, 270, 282, 344
HaeIII	GGCC	4 cut(s)	19, 102, 426, 442
HapII	CCGG	4 cut(s)	197, 215, 303, 437
HgaI	GACGC	1 cut(s)	231
HhaI	GCGC	3 cut(s)	343, 348, 633
Hin1II	CATG	2 cut(s)	24, 101
Hin6I	GCGC	3 cut(s)	341, 346, 631
HinP1I	GCGC	3 cut(s)	341, 346, 631
HinfI	GANTC	5 cut(s)	13, 182, 200, 250, 484
HpaII	CCGG	4 cut(s)	197, 215, 303, 437
HphI	GGTGA	3 cut(s)	141, 307, 608
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	3 cut(s)	161, 255, 459
Hpy188III	TCNNGA	2 cut(s)	471, 518
Hpy8I	GTNNAC	1 cut(s)	138
HpyAV	CCTTC	5 cut(s)	99, 174, 256, 602, 621
HpyCH4III	ACNGT	2 cut(s)	127, 515
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	3 cut(s)	281, 325, 418
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 217, 226, 266, 278
HpyF3I	CTNAG	1 cut(s)	432
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	2 cut(s)	24, 101
HspAI	GCGC	3 cut(s)	341, 346, 631
KpnI	GGTACC	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	148
Lsp1109I	GCAGC	3 cut(s)	223, 253, 293
LweI	GCATC	1 cut(s)	15
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	1 cut(s)	147
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MboII	GAAGA	6 cut(s)	547, 571, 574, 614, 633, 636
MhlI	GDGCHC	1 cut(s)	639
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	4 cut(s)	57, 84, 354, 657
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	2 cut(s)	176, 259
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	9 cut(s)	120, 183, 295, 404, 416, 441, 453, 592, 663
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	357
MslI	CAYNNNNRTG	1 cut(s)	293
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	4 cut(s)	197, 215, 303, 437
MspR9I	CCNGG	3 cut(s)	10, 304, 438
MteI	GCGCNGCGC	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	10
MvnI	CGCG	2 cut(s)	343, 633
MwoI	GCNNNNNNNGC	5 cut(s)	25, 217, 226, 266, 278
NciI	CCSGG	2 cut(s)	304, 438
NcoI	CCATGG	1 cut(s)	20
NdeII	GATC	1 cut(s)	273
NlaIII	CATG	2 cut(s)	24, 101
NlaIV	GGNNCC	4 cut(s)	144, 219, 332, 441
NmuCI	GTSAC	1 cut(s)	147
NspV	TTCGAA	2 cut(s)	571, 586
OliI	CACNNNNGTG	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PfeI	GAWTC	3 cut(s)	13, 200, 484
PkrI	GCNGC	9 cut(s)	7, 192, 210, 213, 228, 268, 271, 283, 345
PleI	GAGTC	2 cut(s)	176, 258
PpsI	GAGTC	2 cut(s)	176, 258
PshBI	ATTAAT	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	4 cut(s)	144, 219, 332, 441
PspPI	GGNCC	1 cut(s)	440
PstI	CTGCAG	1 cut(s)	283
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	9 cut(s)	6, 191, 209, 212, 227, 267, 270, 282, 344
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	1 cut(s)	440
SchI	GAGTC	2 cut(s)	176, 259
ScrFI	CCNGG	3 cut(s)	10, 304, 438
SduI	GDGCHC	1 cut(s)	639
SetI	ASST	6 cut(s)	166, 332, 336, 415, 525, 543
SfaNI	GCATC	1 cut(s)	15
SfcI	CTRYAG	2 cut(s)	279, 447
SfuI	TTCGAA	2 cut(s)	571, 586
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	4 cut(s)	57, 84, 354, 657
SsiI	CCGC	8 cut(s)	188, 191, 209, 227, 269, 343, 363, 452
SspI	AATATT	1 cut(s)	118
StyD4I	CCNGG	3 cut(s)	8, 302, 436
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	2 cut(s)	127, 515
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	4 cut(s)	543, 557, 571, 586
TasI	AATT	4 cut(s)	57, 84, 354, 657
TauI	GCSGC	5 cut(s)	193, 211, 229, 272, 346
TfiI	GAWTC	3 cut(s)	13, 200, 484
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	147
TseI	GCWGC	4 cut(s)	5, 211, 266, 281
Tsp45I	GTSAC	1 cut(s)	147
TspDTI	ATGAA	2 cut(s)	156, 487
TspGWI	ACGGA	2 cut(s)	123, 135
TspRI	CASTG	1 cut(s)	283
VspI	ATTAAT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.