Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000096.1

Orthogroup ID

OG0003211

Physical Location & Seq

Genomic Coordinates Forward (+)

113363 .. 113950

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000096.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atggccggcgctttacatctaatcattatccggccatggcttcttcttctgttttgtattctcagtggtaatttttttcgtacttgctacggtcaatcacgaaacattgagactttctttccttttccattaactccaaccccggcgccggcgccggctccgattattccgatctccccttatttacctccagtagagtcccctccaccggagccgcaacagcctctgccgctgccgctgccgctgccggaaaagaagtctaatgacaacagcaacattgcaaaggcggcagcggcaaccgcagccagcactctggtggtgtgtgcggtggtcttcttttttgtgcaacggtgcattgttgctaagcggaggaggaagatcagcggcggtgttattggtgctggtgctaataacaattccggctcacgaggaagccgtcgtggtcaaccggctgcggtcaatggcaatgagtttgaaaggtatgatgggaatctcaaggggtttatcgtggacgaggatggtcttgatgtgctgtattggagaaaactcgaggccaaaaactcgaaaaagaagagtttcaagaaggag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005522 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0010638 GO:0016020 GO:0016043 GO:0016049 GO:0030029 GO:0030036 GO:0030054 GO:0030832 GO:0030833 GO:0030838 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0040007 GO:0043254 GO:0044087 GO:0044089 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0060560 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

196

Amino Acids

21.4

Weight (kDa)

9.79

Isoelectric Point (pI)

59.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24150 AT1G59910 AT1G70140
fragaria_vesca	FvH4_4g35240 FvH4_5g16231
malus_domestica	MD06G1182500.v1.1 MD13G1085100.v1.1 MD14G1188500.v1.1 MD16G1084300.v1.1
prunus_persica	Prupe.1G261700_v2.0.a1 Prupe.5G180600_v2.0.a1
pyrus_communis	pycom06g16140 pycom13g07360
rosa_chinensis	RchiOBHm_Chr4g0444841 RchiOBHm_Chr7g0179861
rosa_laevigata	RLG00000005317 RLG00000005796
rosa_multiflora	Rmu_sc0000096.1_g000028 Rmu_sc0001754.1_g000001 Rmu_sc0006845.1_g000009 Rmu_sc0031375.1_g000001 Rmu_sc0034891.1_g000002 Rmu_sc0034892.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273390 Rroxscaffold_5G00385330
rosa_rugosa	Rorug04G0355500 Rorug06G0428800
rosa_samantha	Rh4AG417000 Rh4BG428800 Rh4CG443600 Rh4DG424800 Rh7AG028700 Rh7BG027900 Rh7CG029600 Rh7DG029000
rosa_wichuraiana	Rw4G035740 Rw7G002300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	145, 151
AcoI	YGGCCR	2 cut(s)	3, 32
AcyI	GRCGYC	2 cut(s)	146, 152
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	2 cut(s)	148, 208
AgsI	TTSAA	2 cut(s)	476, 580
AleI	CACNNNNGTG	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	548
AoxI	GGCC	3 cut(s)	3, 32, 552
ApeKI	GCWGC	6 cut(s)	232, 238, 244, 290, 302, 452
Asp700I	GAANNNNTTC	1 cut(s)	575
AspLEI	GCGC	3 cut(s)	11, 148, 154
AsuC2I	CCSGG	1 cut(s)	143
AvaI	CYCGRG	1 cut(s)	548
BanI	GGYRCC	2 cut(s)	145, 151
BauI	CACGAG	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	325
BbvI	GCAGC	6 cut(s)	219, 225, 231, 302, 314, 439
BccI	CCATC	2 cut(s)	479, 512
BceAI	ACGGC	1 cut(s)	420
BcnI	CCSGG	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	104
BfoI	RGCGCY	3 cut(s)	12, 149, 155
BlpI	GCTNAGC	1 cut(s)	363
Bme1390I	CCNGG	1 cut(s)	143
BmeT110I	CYCGRG	1 cut(s)	548
BmiI	GGNNCC	4 cut(s)	147, 153, 159, 213
BmrFI	CCNGG	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	174
Bpu1102I	GCTNAGC	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	489
BsaHI	GRCGYC	2 cut(s)	146, 152
BsaJI	CCNNGG	2 cut(s)	35, 141
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 208
Bse118I	RCCGGY	4 cut(s)	5, 148, 154, 448
Bse1I	ACTGG	1 cut(s)	191
Bse3DI	GCAATG	2 cut(s)	276, 472
Bse8I	GATNNNNATC	1 cut(s)	489
BseDI	CCNNGG	2 cut(s)	35, 141
BseGI	GGATG	1 cut(s)	523
BseJI	GATNNNNATC	1 cut(s)	489
BseLI	CCNNNNNNNGG	2 cut(s)	148, 208
BseMI	GCAATG	2 cut(s)	276, 472
BseMII	CTCAG	1 cut(s)	76
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	385
BseXI	GCAGC	6 cut(s)	219, 225, 231, 302, 314, 439
BshFI	GGCC	3 cut(s)	5, 34, 554
BshNI	GGYRCC	2 cut(s)	145, 151
BsiHKCI	CYCGRG	1 cut(s)	548
BsiSI	CCGG	9 cut(s)	6, 31, 143, 149, 155, 209, 248, 420, 449
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	2 cut(s)	148, 208
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	3 cut(s)	5, 34, 554
BsoBI	CYCGRG	1 cut(s)	548
Bsp143I	GATC	2 cut(s)	171, 378
Bsp1720I	GCTNAGC	1 cut(s)	363
Bsp19I	CCATGG	1 cut(s)	35
BspANI	GGCC	3 cut(s)	5, 34, 554
BspCNI	CTCAG	1 cut(s)	75
BspLI	GGNNCC	4 cut(s)	147, 153, 159, 213
BspT107I	GGYRCC	2 cut(s)	145, 151
BsrDI	GCAATG	2 cut(s)	276, 472
BsrFI	RCCGGY	4 cut(s)	5, 148, 154, 448
BsrI	ACTGG	1 cut(s)	191
BssAI	RCCGGY	4 cut(s)	5, 148, 154, 448
BssECI	CCNNGG	2 cut(s)	35, 141
BssMI	GATC	2 cut(s)	171, 378
BssNI	GRCGYC	2 cut(s)	146, 152
BssSI	CACGAG	1 cut(s)	426
BssT1I	CCWWGG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	426
Bst4CI	ACNGT	2 cut(s)	92, 351
Bst6I	CTCTTC	1 cut(s)	566
BstACI	GRCGYC	2 cut(s)	146, 152
BstC8I	GCNNGC	4 cut(s)	7, 150, 156, 307
BstDEI	CTNAG	2 cut(s)	62, 363
BstDSI	CCRYGG	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	523
BstH2I	RGCGCY	3 cut(s)	12, 149, 155
BstHHI	GCGC	3 cut(s)	11, 148, 154
BstKTI	GATC	2 cut(s)	174, 381
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	171, 378
BstSCI	CCNGG	1 cut(s)	141
BstV1I	GCAGC	6 cut(s)	219, 225, 231, 302, 314, 439
BstV2I	GAAGAC	1 cut(s)	325
BstXI	CCANNNNNNTGG	1 cut(s)	313
BsuRI	GGCC	3 cut(s)	5, 34, 554
BtgI	CCRYGG	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	523
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	4 cut(s)	7, 150, 156, 307
CaiI	CAGNNNCTG	1 cut(s)	226
CfoI	GCGC	3 cut(s)	11, 148, 154
Cfr10I	RCCGGY	4 cut(s)	5, 148, 154, 448
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	1 cut(s)	36
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	2 cut(s)	62, 363
DinI	GGCGCC	2 cut(s)	147, 153
DpnI	GATC	2 cut(s)	173, 380
DpnII	GATC	2 cut(s)	171, 378
EaeI	YGGCCR	2 cut(s)	3, 32
Eam1104I	CTCTTC	1 cut(s)	566
EarI	CTCTTC	1 cut(s)	566
Eco130I	CCWWGG	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	548
EcoT14I	CCWWGG	1 cut(s)	35
EgeI	GGCGCC	2 cut(s)	147, 153
EheI	GGCGCC	2 cut(s)	147, 153
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	1 cut(s)	39
FaiI	YATR	2 cut(s)	37, 483
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	1 cut(s)	35
FokI	GGATG	1 cut(s)	530
GlaI	GCGC	3 cut(s)	10, 147, 153
GsuI	CTGGAG	1 cut(s)	174
HaeII	RGCGCY	3 cut(s)	12, 149, 155
HaeIII	GGCC	3 cut(s)	5, 34, 554
HapII	CCGG	9 cut(s)	6, 31, 143, 149, 155, 209, 248, 420, 449
HhaI	GCGC	3 cut(s)	11, 148, 154
Hin1I	GRCGYC	2 cut(s)	146, 152
Hin1II	CATG	1 cut(s)	39
Hin6I	GCGC	3 cut(s)	9, 146, 152
HinP1I	GCGC	3 cut(s)	9, 146, 152
HincII	GTYRAC	1 cut(s)	446
HindII	GTYRAC	1 cut(s)	446
HinfI	GANTC	2 cut(s)	197, 490
HpaII	CCGG	9 cut(s)	6, 31, 143, 149, 155, 209, 248, 420, 449
Hpy166II	GTNNAC	2 cut(s)	446, 511
Hpy188I	TCNGA	2 cut(s)	162, 171
Hpy188III	TCNNGA	4 cut(s)	99, 426, 524, 580
Hpy8I	GTNNAC	2 cut(s)	446, 511
Hpy99I	CGWCG	1 cut(s)	441
HpyAV	CCTTC	1 cut(s)	577
HpyCH4III	ACNGT	2 cut(s)	92, 351
HpyCH4V	TGCA	3 cut(s)	281, 346, 354
HpyF3I	CTNAG	2 cut(s)	62, 363
Hsp92I	GRCGYC	2 cut(s)	146, 152
Hsp92II	CATG	1 cut(s)	39
HspAI	GCGC	3 cut(s)	9, 146, 152
KasI	GGCGCC	2 cut(s)	145, 151
KroI	GCCGGC	3 cut(s)	5, 148, 154
KroNI	GCCGGC	3 cut(s)	7, 150, 156
Kzo9I	GATC	2 cut(s)	171, 378
LmnI	GCTCC	2 cut(s)	163, 211
Lsp1109I	GCAGC	6 cut(s)	219, 225, 231, 302, 314, 439
MalI	GATC	2 cut(s)	173, 380
MboI	GATC	2 cut(s)	171, 378
MboII	GAAGA	5 cut(s)	35, 38, 325, 388, 583
MluCI	AATT	2 cut(s)	70, 415
Mly113I	GGCGCC	2 cut(s)	146, 152
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	161
MnlI	CCTC	8 cut(s)	198, 213, 234, 363, 366, 422, 508, 544
MreI	CGCCGGCG	1 cut(s)	148
MroNI	GCCGGC	3 cut(s)	5, 148, 154
MroXI	GAANNNNTTC	1 cut(s)	575
MseI	TTAA	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	314
MspA1I	CMGCKG	5 cut(s)	232, 238, 244, 293, 384
MspI	CCGG	9 cut(s)	6, 31, 143, 149, 155, 209, 248, 420, 449
MspR9I	CCNGG	1 cut(s)	143
NaeI	GCCGGC	3 cut(s)	7, 150, 156
NarI	GGCGCC	2 cut(s)	146, 152
NciI	CCSGG	1 cut(s)	143
NcoI	CCATGG	1 cut(s)	35
NdeII	GATC	2 cut(s)	171, 378
NgoMIV	GCCGGC	3 cut(s)	5, 148, 154
NlaIII	CATG	1 cut(s)	39
NlaIV	GGNNCC	4 cut(s)	147, 153, 159, 213
OliI	CACNNNNGTG	1 cut(s)	314
PaeR7I	CTCGAG	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	1 cut(s)	433
PdiI	GCCGGC	3 cut(s)	7, 150, 156
PdmI	GAANNNNTTC	1 cut(s)	575
PfeI	GAWTC	1 cut(s)	490
PleI	GAGTC	1 cut(s)	205
PluTI	GGCGCC	2 cut(s)	149, 155
PpsI	GAGTC	1 cut(s)	205
PspN4I	GGNNCC	4 cut(s)	147, 153, 159, 213
PspXI	VCTCGAGB	1 cut(s)	548
PstNI	CAGNNNCTG	1 cut(s)	226
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
RseI	CAYNNNNRTG	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	131
Sau3AI	GATC	2 cut(s)	171, 378
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	143
SetI	ASST	2 cut(s)	190, 482
SfoI	GGCGCC	2 cut(s)	147, 153
Sfr274I	CTCGAG	1 cut(s)	548
SgrAI	CRCCGGYG	1 cut(s)	148
SlaI	CTCGAG	1 cut(s)	548
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	2 cut(s)	494, 548
SmoI	CTYRAG	2 cut(s)	494, 548
Sse9I	AATT	2 cut(s)	70, 415
SspDI	GGCGCC	2 cut(s)	145, 151
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	92, 351
TaqI	TCGA	2 cut(s)	549, 563
TasI	AATT	2 cut(s)	70, 415
TauI	GCSGC	7 cut(s)	217, 232, 238, 244, 290, 296, 387
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	6 cut(s)	232, 238, 244, 290, 302, 452
TspRI	CASTG	1 cut(s)	70
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XhoI	CTCGAG	1 cut(s)	548
XmnI	GAANNNNTTC	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.