Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031375.1

Orthogroup ID

OG0003211

Physical Location & Seq

Genomic Coordinates Forward (+)

32 .. 628

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031375.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atggccggcgctttacatctaatcattatccggccatggcttcttcttcttcttcttctgttttgtattctcagtggtaatttttttcgtacttgctacggtcaatcacaaaacattgagactttctttccttttccattaactccaaccccggcgccggcgccggctccgattattccgatctccccttatttacctccagtagagtcccctccaccggagccgcaacagcctctgccgctgccgctgccgctgccggaaaagaagtctaatgacaacagcaacattgcaaaggcggcagcggcaaccgcagccagcactctggtggtgtgtgcggtggtcttcttttttgtgcaacggtgcattgttgccaagcggaggaggaagatcagcggcggtgttattggtgctggtgctaataacaattccgcctcacgaggaagccgtcgtggtcaaccggctgcggtcaatggcaatgagtttgaaaggtatgatgggaatctcaaggggtttattgtggacgaggatggtcttgatgtgctgtattggagaaaactcgaggccaaaaactcgaaaaagaagagtttcaagaaggag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005522 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0010638 GO:0016020 GO:0016043 GO:0016049 GO:0030029 GO:0030036 GO:0030054 GO:0030832 GO:0030833 GO:0030838 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0040007 GO:0043254 GO:0044087 GO:0044089 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0060560 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

199

Amino Acids

21.73

Weight (kDa)

9.69

Isoelectric Point (pI)

58.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24150 AT1G59910 AT1G70140
fragaria_vesca	FvH4_4g35240 FvH4_5g16231
malus_domestica	MD06G1182500.v1.1 MD13G1085100.v1.1 MD14G1188500.v1.1 MD16G1084300.v1.1
prunus_persica	Prupe.1G261700_v2.0.a1 Prupe.5G180600_v2.0.a1
pyrus_communis	pycom06g16140 pycom13g07360
rosa_chinensis	RchiOBHm_Chr4g0444841 RchiOBHm_Chr7g0179861
rosa_laevigata	RLG00000005317 RLG00000005796
rosa_multiflora	Rmu_sc0000096.1_g000028 Rmu_sc0001754.1_g000001 Rmu_sc0006845.1_g000009 Rmu_sc0031375.1_g000001 Rmu_sc0034891.1_g000002 Rmu_sc0034892.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273390 Rroxscaffold_5G00385330
rosa_rugosa	Rorug04G0355500 Rorug06G0428800
rosa_samantha	Rh4AG417000 Rh4BG428800 Rh4CG443600 Rh4DG424800 Rh7AG028700 Rh7BG027900 Rh7CG029600 Rh7DG029000
rosa_wichuraiana	Rw4G035740 Rw7G002300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	154, 160
AcoI	YGGCCR	2 cut(s)	3, 32
AcyI	GRCGYC	2 cut(s)	155, 161
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	3 cut(s)	157, 217, 378
AgsI	TTSAA	2 cut(s)	485, 589
AleI	CACNNNNGTG	1 cut(s)	323
Alw26I	GTCTC	1 cut(s)	113
AlwNI	CAGNNNCTG	1 cut(s)	235
Ama87I	CYCGRG	1 cut(s)	557
AoxI	GGCC	3 cut(s)	3, 32, 561
ApeKI	GCWGC	6 cut(s)	241, 247, 253, 299, 311, 461
Asp700I	GAANNNNTTC	1 cut(s)	584
AspLEI	GCGC	3 cut(s)	11, 157, 163
AsuC2I	CCSGG	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	557
BanI	GGYRCC	2 cut(s)	154, 160
BauI	CACGAG	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	334
BbvI	GCAGC	6 cut(s)	228, 234, 240, 311, 323, 448
BccI	CCATC	2 cut(s)	488, 521
BceAI	ACGGC	1 cut(s)	429
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	113
BfoI	RGCGCY	3 cut(s)	12, 158, 164
Bme1390I	CCNGG	1 cut(s)	152
BmeT110I	CYCGRG	1 cut(s)	557
BmiI	GGNNCC	4 cut(s)	156, 162, 168, 222
BmrFI	CCNGG	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	488
BpuMI	CCSGG	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	498
BsaHI	GRCGYC	2 cut(s)	155, 161
BsaJI	CCNNGG	2 cut(s)	35, 150
BsaWI	WCCGGW	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 217, 378
Bse118I	RCCGGY	4 cut(s)	5, 157, 163, 457
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	2 cut(s)	285, 481
Bse8I	GATNNNNATC	1 cut(s)	498
BseDI	CCNNGG	2 cut(s)	35, 150
BseGI	GGATG	1 cut(s)	532
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	3 cut(s)	157, 217, 378
BseMI	GCAATG	2 cut(s)	285, 481
BseMII	CTCAG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	394
BseXI	GCAGC	6 cut(s)	228, 234, 240, 311, 323, 448
BshFI	GGCC	3 cut(s)	5, 34, 563
BshNI	GGYRCC	2 cut(s)	154, 160
BsiHKCI	CYCGRG	1 cut(s)	557
BsiSI	CCGG	8 cut(s)	6, 31, 152, 158, 164, 218, 257, 458
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	3 cut(s)	157, 217, 378
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	3 cut(s)	5, 34, 563
BsoBI	CYCGRG	1 cut(s)	557
Bsp143I	GATC	2 cut(s)	180, 387
Bsp19I	CCATGG	1 cut(s)	35
BspANI	GGCC	3 cut(s)	5, 34, 563
BspCNI	CTCAG	1 cut(s)	84
BspLI	GGNNCC	4 cut(s)	156, 162, 168, 222
BspT107I	GGYRCC	2 cut(s)	154, 160
BsrDI	GCAATG	2 cut(s)	285, 481
BsrFI	RCCGGY	4 cut(s)	5, 157, 163, 457
BsrI	ACTGG	1 cut(s)	200
BssAI	RCCGGY	4 cut(s)	5, 157, 163, 457
BssECI	CCNNGG	2 cut(s)	35, 150
BssMI	GATC	2 cut(s)	180, 387
BssNI	GRCGYC	2 cut(s)	155, 161
BssSI	CACGAG	1 cut(s)	435
BssT1I	CCWWGG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	101, 360
Bst6I	CTCTTC	1 cut(s)	575
BstACI	GRCGYC	2 cut(s)	155, 161
BstC8I	GCNNGC	4 cut(s)	7, 159, 165, 316
BstDEI	CTNAG	1 cut(s)	71
BstDSI	CCRYGG	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	532
BstH2I	RGCGCY	3 cut(s)	12, 158, 164
BstHHI	GCGC	3 cut(s)	11, 157, 163
BstKTI	GATC	2 cut(s)	183, 390
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	2 cut(s)	180, 387
BstSCI	CCNGG	1 cut(s)	150
BstV1I	GCAGC	6 cut(s)	228, 234, 240, 311, 323, 448
BstV2I	GAAGAC	1 cut(s)	334
BstXI	CCANNNNNNTGG	1 cut(s)	322
BsuRI	GGCC	3 cut(s)	5, 34, 563
BtgI	CCRYGG	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	532
BtsIMutI	CAGTG	1 cut(s)	79
Cac8I	GCNNGC	4 cut(s)	7, 159, 165, 316
CaiI	CAGNNNCTG	1 cut(s)	235
CfoI	GCGC	3 cut(s)	11, 157, 163
Cfr10I	RCCGGY	4 cut(s)	5, 157, 163, 457
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	1 cut(s)	36
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	1 cut(s)	71
DinI	GGCGCC	2 cut(s)	156, 162
DpnI	GATC	2 cut(s)	182, 389
DpnII	GATC	2 cut(s)	180, 387
EaeI	YGGCCR	2 cut(s)	3, 32
Eam1104I	CTCTTC	1 cut(s)	575
EarI	CTCTTC	1 cut(s)	575
EciI	GGCGGA	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	557
EcoT14I	CCWWGG	1 cut(s)	35
EgeI	GGCGCC	2 cut(s)	156, 162
EheI	GGCGCC	2 cut(s)	156, 162
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	1 cut(s)	39
FaiI	YATR	2 cut(s)	37, 492
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	1 cut(s)	35
FokI	GGATG	1 cut(s)	539
GlaI	GCGC	3 cut(s)	10, 156, 162
GsuI	CTGGAG	1 cut(s)	183
HaeII	RGCGCY	3 cut(s)	12, 158, 164
HaeIII	GGCC	3 cut(s)	5, 34, 563
HapII	CCGG	8 cut(s)	6, 31, 152, 158, 164, 218, 257, 458
HhaI	GCGC	3 cut(s)	11, 157, 163
Hin1I	GRCGYC	2 cut(s)	155, 161
Hin1II	CATG	1 cut(s)	39
Hin6I	GCGC	3 cut(s)	9, 155, 161
HinP1I	GCGC	3 cut(s)	9, 155, 161
HincII	GTYRAC	1 cut(s)	455
HindII	GTYRAC	1 cut(s)	455
HinfI	GANTC	2 cut(s)	206, 499
HpaII	CCGG	8 cut(s)	6, 31, 152, 158, 164, 218, 257, 458
Hpy166II	GTNNAC	2 cut(s)	455, 520
Hpy188I	TCNGA	2 cut(s)	171, 180
Hpy188III	TCNNGA	3 cut(s)	435, 533, 589
Hpy8I	GTNNAC	2 cut(s)	455, 520
Hpy99I	CGWCG	1 cut(s)	450
HpyAV	CCTTC	1 cut(s)	586
HpyCH4III	ACNGT	2 cut(s)	101, 360
HpyCH4V	TGCA	3 cut(s)	290, 355, 363
HpyF3I	CTNAG	1 cut(s)	71
Hsp92I	GRCGYC	2 cut(s)	155, 161
Hsp92II	CATG	1 cut(s)	39
HspAI	GCGC	3 cut(s)	9, 155, 161
KasI	GGCGCC	2 cut(s)	154, 160
KroI	GCCGGC	3 cut(s)	5, 157, 163
KroNI	GCCGGC	3 cut(s)	7, 159, 165
Kzo9I	GATC	2 cut(s)	180, 387
LmnI	GCTCC	2 cut(s)	172, 220
Lsp1109I	GCAGC	6 cut(s)	228, 234, 240, 311, 323, 448
MalI	GATC	2 cut(s)	182, 389
MboI	GATC	2 cut(s)	180, 387
MboII	GAAGA	8 cut(s)	35, 38, 41, 44, 47, 334, 397, 592
MluCI	AATT	2 cut(s)	79, 424
Mly113I	GGCGCC	2 cut(s)	155, 161
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	9 cut(s)	207, 222, 243, 372, 375, 431, 442, 517, 553
MreI	CGCCGGCG	1 cut(s)	157
MroNI	GCCGGC	3 cut(s)	5, 157, 163
MroXI	GAANNNNTTC	1 cut(s)	584
MseI	TTAA	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	323
MspA1I	CMGCKG	5 cut(s)	241, 247, 253, 302, 393
MspI	CCGG	8 cut(s)	6, 31, 152, 158, 164, 218, 257, 458
MspR9I	CCNGG	1 cut(s)	152
NaeI	GCCGGC	3 cut(s)	7, 159, 165
NarI	GGCGCC	2 cut(s)	155, 161
NciI	CCSGG	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	35
NdeII	GATC	2 cut(s)	180, 387
NgoMIV	GCCGGC	3 cut(s)	5, 157, 163
NlaIII	CATG	1 cut(s)	39
NlaIV	GGNNCC	4 cut(s)	156, 162, 168, 222
OliI	CACNNNNGTG	1 cut(s)	323
PaeR7I	CTCGAG	1 cut(s)	557
PcsI	WCGNNNNNNNCGW	1 cut(s)	442
PdiI	GCCGGC	3 cut(s)	7, 159, 165
PdmI	GAANNNNTTC	1 cut(s)	584
PfeI	GAWTC	1 cut(s)	499
PleI	GAGTC	1 cut(s)	214
PluTI	GGCGCC	2 cut(s)	158, 164
PpsI	GAGTC	1 cut(s)	214
PspN4I	GGNNCC	4 cut(s)	156, 162, 168, 222
PspXI	VCTCGAGB	1 cut(s)	557
PstNI	CAGNNNCTG	1 cut(s)	235
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	140
Sau3AI	GATC	2 cut(s)	180, 387
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	2 cut(s)	199, 491
SfoI	GGCGCC	2 cut(s)	156, 162
Sfr274I	CTCGAG	1 cut(s)	557
SgrAI	CRCCGGYG	1 cut(s)	157
SlaI	CTCGAG	1 cut(s)	557
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	2 cut(s)	503, 557
SmoI	CTYRAG	2 cut(s)	503, 557
Sse9I	AATT	2 cut(s)	79, 424
SspDI	GGCGCC	2 cut(s)	154, 160
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	101, 360
TaqI	TCGA	2 cut(s)	558, 572
TasI	AATT	2 cut(s)	79, 424
TauI	GCSGC	7 cut(s)	226, 241, 247, 253, 299, 305, 396
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	1 cut(s)	79
TseI	GCWGC	6 cut(s)	241, 247, 253, 299, 311, 461
TspRI	CASTG	1 cut(s)	79
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XhoI	CTCGAG	1 cut(s)	557
XmnI	GAANNNNTTC	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.