MD07G1043500.v1.1

Choline kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
3732335 .. 3746678
14344 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1043500.v1.1.491

Sequence Viewer

Length: 1158 bp
ATGGGCGCCATGGAAAATGCCATAGTCAACAGAGAAGATCGTATTCCAGCAGAAGCTAGGGAGATTCTACAATCATTGGCTTCCCAGTGGGATGACGTGGTGGATTCAAAGGCACTGCAGGTGATCCCTCTCAAGGGTGCAATGACAAATGAGGTTTTTGAAATAAAGTGGCCATCAAGGACAGGGGAACTTTCACATAAAGTTGTGGTTAGGATTTATGGTGAGGGTGTCGAGGTGTTCTTTGACAGGGATAATGAGATCCGAACATTTGAACACATGTCAAAGAATGGTCAGGGACCTCGTTTGCTTGGGCGTTTTCCAAATGGCCGAATTGAAGCGTTCATCCACGCACGGACACTCTCAGCATGTGATCTACGTGATCCAGATACATCTGCTCTTATAGCTTCGAAATTGAAGGAGTTCCATGAACTTGATATGCCTGGTCCAAAGGTTGTCACCCTCTGGGATAGATTGCGAAATTGGCTCAGTACGGCCAAGAGATTGTGTACCCCAGAAGAAGCTAATTCCTTTCAGCTGGATTCTATTGAAAACGAAATCCCGTTACTGGAGAGGGAGCTCTCAGGGATTCATGAACGTATGGGTTTTTGCCACAATGATTTACAGTATGGTAACATAATGCTTGAGGAAAAGAGTAAATCGATAACCATAATTGATTATGAGTATGCAAGTTATAATGCTGTACAATTTGACATAGCAAATCATTTCTGTGAGATGGCAGCTGAATATCACACTGATACACCTCATATTTTGGACTACAGCAAATATCCTGGTTTGGAGGAGCGTCGGCGGTTTGTTTGTTTGTACCTGAGTTCTTCAGGCAATCAACCTACTCACAGCGAAGTGGAGCAGCTGGTTCAAGATGTTGAGAACTATACTCTTGCAAGCCATCTTTTTTGGGGCTTATGGGGAATAATATCGGAACATGTGAATGAAATTGACTTTGACTACATGGAATACGCAAGGCAGAGGTTTCAACAGTACTGGACAAGCAGGCCTAAGCTGTTGGGTTCCGTTGGATCTCCTCCAGATATTGTAACTGATGGCGAGCAAAAGGGAACTGAAAAAACATTAGCTAAGCGGCCAAGTATGTTGAAGAAGCTTAAGAAATATTTCAGCTTCACAAAGACGAAAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

386

Amino Acids

44.37

Weight (kDa)

5.55

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Choline_kinase PF01633 42 - 335 1.7e-97 Choline/ethanolamine kinase
APH PF01636 43 - 242 4.7e-09 Phosphotransferase enzyme family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 693
AarI CACCTGC 1 cut(s) 109
Acc36I ACCTGC 1 cut(s) 109
AccB1I GGYRCC 1 cut(s) 5
AciI CCGC 2 cut(s) 808, 1099
AclWI GGATC 4 cut(s) 118, 253, 374, 1045
AcoI YGGCCR 4 cut(s) 170, 325, 492, 1100
AcuI CTGAAG 1 cut(s) 819
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 5 cut(s) 490, 508, 702, 824, 1001
AfiI CCNNNNNNNGG 3 cut(s) 133, 134, 565
AflII CTTAAG 1 cut(s) 1121
AflIII ACRYGT 2 cut(s) 276, 943
AgsI TTSAA 9 cut(s) 108, 161, 272, 335, 415, 548, 878, 995, 1114
AjiI CACGTC 1 cut(s) 97
AjnI CCWGG 2 cut(s) 439, 787
Alw21I GWGCWC 1 cut(s) 579
AlwI GGATC 4 cut(s) 118, 253, 374, 1045
AoxI GGCC 5 cut(s) 170, 325, 492, 1013, 1100
ApeKI GCWGC 2 cut(s) 737, 868
Asp700I GAANNNNTTC 2 cut(s) 419, 1130
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 296, 443
AsuHPI GGTGA 3 cut(s) 133, 233, 448
AsuII TTCGAA 1 cut(s) 407
AvaII GGWCC 2 cut(s) 296, 443
BalI TGGCCA 1 cut(s) 172
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 579
Bbv12I GWGCWC 1 cut(s) 579
BbvI GCAGC 2 cut(s) 749, 880
BccI CCATC 4 cut(s) 181, 727, 915, 1055
BceAI ACGGC 1 cut(s) 507
BciT130I CCWGG 2 cut(s) 441, 789
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 2 cut(s) 116, 775
BfoI RGCGCY 1 cut(s) 9
BfrI CTTAAG 1 cut(s) 1121
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 3 cut(s) 738, 869, 1100
BlpI GCTNAGC 1 cut(s) 1095
BlsI GCNGC 3 cut(s) 739, 870, 1101
BmcAI AGTACT 1 cut(s) 1001
Bme1390I CCNGG 2 cut(s) 441, 789
Bme18I GGWCC 2 cut(s) 296, 443
BmgBI CACGTC 1 cut(s) 97
BmgT120I GGNCC 2 cut(s) 296, 443
BmiI GGNNCC 3 cut(s) 7, 297, 1030
BmrFI CCNGG 2 cut(s) 441, 789
BmrI ACTGGG 1 cut(s) 79
BmuI ACTGGG 1 cut(s) 79
BpmI CTGGAG 2 cut(s) 587, 1029
Bpu10I CCTNAGC 1 cut(s) 1017
Bpu1102I GCTNAGC 1 cut(s) 1095
Bpu14I TTCGAA 1 cut(s) 407
BpuEI CTTGAG 2 cut(s) 116, 662
Bsa29I ATCGAT 1 cut(s) 659
BsaAI YACGTR 1 cut(s) 377
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 134, 565
Bse1I ACTGG 3 cut(s) 85, 570, 1007
Bse3DI GCAATG 1 cut(s) 147
BseBI CCWGG 2 cut(s) 441, 789
BseCI ATCGAT 1 cut(s) 659
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 97, 342
BseLI CCNNNNNNNGG 3 cut(s) 133, 134, 565
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 4 cut(s) 375, 499, 594, 818
BseNI ACTGG 3 cut(s) 85, 570, 1007
BseRI GAGGAG 2 cut(s) 812, 1032
BseXI GCAGC 2 cut(s) 749, 880
BshFI GGCC 5 cut(s) 172, 327, 494, 1015, 1102
BshNI GGYRCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 659
BsiHKAI GWGCWC 1 cut(s) 579
BslFI GGGAC 1 cut(s) 309
BslI CCNNNNNNNGG 3 cut(s) 133, 134, 565
BsmFI GGGAC 1 cut(s) 309
BsnI GGCC 5 cut(s) 172, 327, 494, 1015, 1102
Bsp119I TTCGAA 1 cut(s) 407
Bsp1286I GDGCHC 1 cut(s) 579
Bsp1407I TGTACA 1 cut(s) 700
Bsp143I GATC 6 cut(s) 37, 123, 258, 370, 379, 1037
Bsp1720I GCTNAGC 1 cut(s) 1095
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 2 cut(s) 808, 1099
BspANI GGCC 5 cut(s) 172, 327, 494, 1015, 1102
BspCNI CTCAG 4 cut(s) 374, 498, 593, 819
BspDI ATCGAT 1 cut(s) 659
BspHI TCATGA 1 cut(s) 589
BspLI GGNNCC 3 cut(s) 7, 297, 1030
BspMAI CTGCAG 1 cut(s) 120
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 4 cut(s) 118, 253, 374, 1045
BspT104I TTCGAA 1 cut(s) 407
BspT107I GGYRCC 1 cut(s) 5
BspTI CTTAAG 1 cut(s) 1121
BsrDI GCAATG 1 cut(s) 147
BsrGI TGTACA 1 cut(s) 700
BsrI ACTGG 3 cut(s) 85, 570, 1007
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 6 cut(s) 37, 123, 258, 370, 379, 1037
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 441, 789
Bst4CI ACNGT 2 cut(s) 624, 999
BstACI GRCGYC 1 cut(s) 6
BstAFI CTTAAG 1 cut(s) 1121
BstAUI TGTACA 1 cut(s) 700
BstBAI YACGTR 1 cut(s) 377
BstBI TTCGAA 1 cut(s) 407
BstC8I GCNNGC 3 cut(s) 904, 1013, 1067
BstDEI CTNAG 7 cut(s) 361, 485, 580, 827, 1017, 1095, 1155
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 2 cut(s) 97, 342
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 6 cut(s) 40, 126, 261, 373, 382, 1040
BstMBI GATC 6 cut(s) 37, 123, 258, 370, 379, 1037
BstMWI GCNNNNNNNGC 2 cut(s) 401, 481
BstNI CCWGG 2 cut(s) 441, 789
BstNSI RCATGY 3 cut(s) 280, 369, 947
BstSCI CCNGG 2 cut(s) 439, 787
BstSFI CTRYAG 2 cut(s) 116, 775
BstV1I GCAGC 2 cut(s) 749, 880
BstX2I RGATCY 2 cut(s) 258, 1037
BstYI RGATCY 2 cut(s) 258, 1037
Bsu15I ATCGAT 1 cut(s) 659
BsuRI GGCC 5 cut(s) 172, 327, 494, 1015, 1102
BsuTUI ATCGAT 1 cut(s) 659
BtgI CCRYGG 1 cut(s) 9
BtrI CACGTC 1 cut(s) 97
BtsCI GGATG 2 cut(s) 97, 342
BtsI GCAGTG 1 cut(s) 113
BtsIMutI CAGTG 3 cut(s) 92, 113, 750
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 3 cut(s) 904, 1013, 1067
CciI TCATGA 1 cut(s) 589
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 296, 443
ClaI ATCGAT 1 cut(s) 659
CseI GACGC 1 cut(s) 791
Csp6I GTAC 5 cut(s) 489, 507, 701, 823, 1000
CviAII CATG 7 cut(s) 10, 277, 366, 425, 590, 944, 970
CviQI GTAC 5 cut(s) 489, 507, 701, 823, 1000
DdeI CTNAG 7 cut(s) 361, 485, 580, 827, 1017, 1095, 1155
DinI GGCGCC 1 cut(s) 7
DpnI GATC 6 cut(s) 39, 125, 260, 372, 381, 1039
DpnII GATC 6 cut(s) 37, 123, 258, 370, 379, 1037
EaeI YGGCCR 4 cut(s) 170, 325, 492, 1100
Ecl136II GAGCTC 1 cut(s) 577
Eco130I CCWWGG 1 cut(s) 9
Eco147I AGGCCT 1 cut(s) 1015
Eco24I GRGCYC 1 cut(s) 579
Eco47I GGWCC 2 cut(s) 296, 443
Eco53kI GAGCTC 1 cut(s) 577
Eco57I CTGAAG 1 cut(s) 819
EcoICRI GAGCTC 1 cut(s) 577
EcoO109I RGGNCCY 1 cut(s) 296
EcoRII CCWGG 2 cut(s) 439, 787
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 579
EgeI GGCGCC 1 cut(s) 7
EheI GGCGCC 1 cut(s) 7
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 7 cut(s) 13, 280, 369, 428, 593, 947, 973
FaqI GGGAC 1 cut(s) 309
FatI CATG 7 cut(s) 9, 276, 365, 424, 589, 943, 969
Fnu4HI GCNGC 3 cut(s) 738, 869, 1100
FokI GGATG 2 cut(s) 104, 329
FriOI GRGCYC 1 cut(s) 579
Fsp4HI GCNGC 3 cut(s) 738, 869, 1100
FspBI CTAG 1 cut(s) 57
GlaI GCGC 1 cut(s) 7
GluI GCNGC 3 cut(s) 738, 869, 1100
GsuI CTGGAG 2 cut(s) 587, 1029
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 5 cut(s) 172, 327, 494, 1015, 1102
HgaI GACGC 1 cut(s) 791
HhaI GCGC 1 cut(s) 8
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 7 cut(s) 13, 280, 369, 428, 593, 947, 973
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HindIII AAGCTT 1 cut(s) 1118
HinfI GANTC 4 cut(s) 64, 104, 539, 586
HphI GGTGA 3 cut(s) 133, 233, 448
Hpy166II GTNNAC 2 cut(s) 28, 507
Hpy188I TCNGA 2 cut(s) 263, 940
Hpy188III TCNNGA 4 cut(s) 383, 590, 878, 1046
Hpy8I GTNNAC 2 cut(s) 28, 507
Hpy99I CGWCG 1 cut(s) 807
HpyAV CCTTC 1 cut(s) 409
HpyCH4III ACNGT 2 cut(s) 624, 999
HpyCH4IV ACGT 3 cut(s) 96, 376, 595
HpyCH4V TGCA 4 cut(s) 118, 140, 686, 902
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 481
HpyF3I CTNAG 7 cut(s) 361, 485, 580, 827, 1017, 1095, 1155
HpySE526I ACGT 3 cut(s) 96, 376, 595
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 7 cut(s) 13, 280, 369, 428, 593, 947, 973
HspAI GCGC 1 cut(s) 6
KasI GGCGCC 1 cut(s) 5
Kzo9I GATC 6 cut(s) 37, 123, 258, 370, 379, 1037
LmnI GCTCC 3 cut(s) 574, 799, 865
Lsp1109I GCAGC 2 cut(s) 749, 880
MaeI CTAG 1 cut(s) 57
MaeII ACGT 3 cut(s) 96, 376, 595
MaeIII GTNAC 4 cut(s) 454, 561, 629, 1054
MalI GATC 6 cut(s) 39, 125, 260, 372, 381, 1039
MboI GATC 6 cut(s) 37, 123, 258, 370, 379, 1037
MboII GAAGA 4 cut(s) 47, 527, 825, 1126
MflI RGATCY 2 cut(s) 258, 1037
MhlI GDGCHC 1 cut(s) 579
MlsI TGGCCA 1 cut(s) 172
MluCI AATT 7 cut(s) 330, 410, 478, 523, 669, 704, 954
MluNI TGGCCA 1 cut(s) 172
Mly113I GGCGCC 1 cut(s) 6
MmeI TCCRAC 1 cut(s) 1015
Mox20I TGGCCA 1 cut(s) 172
MroXI GAANNNNTTC 2 cut(s) 419, 1130
MscI TGGCCA 1 cut(s) 172
MseI TTAA 1 cut(s) 1122
MslI CAYNNNNRTG 2 cut(s) 726, 948
Msp20I TGGCCA 1 cut(s) 172
MspA1I CMGCKG 3 cut(s) 535, 740, 871
MspCI CTTAAG 1 cut(s) 1121
MspR9I CCNGG 2 cut(s) 441, 789
MvaI CCWGG 2 cut(s) 441, 789
MwoI GCNNNNNNNGC 2 cut(s) 401, 481
NarI GGCGCC 1 cut(s) 6
NcoI CCATGG 1 cut(s) 9
NdeII GATC 6 cut(s) 37, 123, 258, 370, 379, 1037
NlaIII CATG 7 cut(s) 13, 280, 369, 428, 593, 947, 973
NlaIV GGNNCC 3 cut(s) 7, 297, 1030
NmuCI GTSAC 1 cut(s) 454
NspI RCATGY 3 cut(s) 280, 369, 947
NspV TTCGAA 1 cut(s) 407
PagI TCATGA 1 cut(s) 589
PaqCI CACCTGC 1 cut(s) 109
PceI AGGCCT 1 cut(s) 1015
PciI ACATGT 2 cut(s) 276, 943
PdmI GAANNNNTTC 2 cut(s) 419, 1130
PfeI GAWTC 4 cut(s) 64, 104, 539, 586
PkrI GCNGC 3 cut(s) 739, 870, 1101
PluTI GGCGCC 1 cut(s) 9
Ppu21I YACGTR 1 cut(s) 377
PpuMI RGGWCCY 1 cut(s) 296
PscI ACATGT 2 cut(s) 276, 943
PsiI TTATAA 1 cut(s) 693
Psp124BI GAGCTC 1 cut(s) 579
Psp5II RGGWCCY 1 cut(s) 296
Psp6I CCWGG 2 cut(s) 439, 787
PspGI CCWGG 2 cut(s) 439, 787
PspN4I GGNNCC 3 cut(s) 7, 297, 1030
PspPI GGNCC 2 cut(s) 296, 443
PspPPI RGGWCCY 1 cut(s) 296
PstI CTGCAG 1 cut(s) 120
PsuI RGATCY 2 cut(s) 258, 1037
PvuII CAGCTG 3 cut(s) 535, 740, 871
RsaI GTAC 5 cut(s) 490, 508, 702, 824, 1001
RsaNI GTAC 5 cut(s) 489, 507, 701, 823, 1000
RseI CAYNNNNRTG 2 cut(s) 726, 948
SacI GAGCTC 1 cut(s) 579
SaqAI TTAA 1 cut(s) 1122
SatI GCNGC 3 cut(s) 738, 869, 1100
Sau3AI GATC 6 cut(s) 37, 123, 258, 370, 379, 1037
Sau96I GGNCC 2 cut(s) 296, 443
ScaI AGTACT 1 cut(s) 1001
ScrFI CCNGG 2 cut(s) 441, 789
SduI GDGCHC 1 cut(s) 579
SfcI CTRYAG 2 cut(s) 116, 775
SfoI GGCGCC 1 cut(s) 7
SfuI TTCGAA 1 cut(s) 407
SinI GGWCC 2 cut(s) 296, 443
SmiMI CAYNNNNRTG 2 cut(s) 726, 948
SmlI CTYRAG 3 cut(s) 131, 641, 1121
SmoI CTYRAG 3 cut(s) 131, 641, 1121
Sse9I AATT 7 cut(s) 330, 410, 478, 523, 669, 704, 954
SseBI AGGCCT 1 cut(s) 1015
SsiI CCGC 2 cut(s) 808, 1099
SspDI GGCGCC 1 cut(s) 5
SspI AATATT 1 cut(s) 1130
SspMI CTAG 1 cut(s) 57
SstI GAGCTC 1 cut(s) 579
StuI AGGCCT 1 cut(s) 1015
StyD4I CCNGG 2 cut(s) 439, 787
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 624, 999
TaiI ACGT 3 cut(s) 99, 379, 598
TaqI TCGA 3 cut(s) 231, 407, 659
TasI AATT 7 cut(s) 330, 410, 478, 523, 669, 704, 954
TatI WGTACW 2 cut(s) 700, 999
TauI GCSGC 1 cut(s) 1102
TfiI GAWTC 4 cut(s) 64, 104, 539, 586
Tru1I TTAA 1 cut(s) 1122
Tru9I TTAA 1 cut(s) 1122
TscAI CASTG 3 cut(s) 92, 120, 757
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 2 cut(s) 737, 868
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 5 cut(s) 331, 441, 578, 606, 966
TspGWI ACGGA 2 cut(s) 367, 1021
TspRI CASTG 3 cut(s) 92, 120, 757
Vha464I CTTAAG 1 cut(s) 1121
VpaK11BI GGWCC 2 cut(s) 296, 443
XceI RCATGY 3 cut(s) 280, 369, 947
XmnI GAANNNNTTC 2 cut(s) 419, 1130
XspI CTAG 1 cut(s) 57
ZrmI AGTACT 1 cut(s) 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.