Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000279.1

Orthogroup ID

OG0002182

Physical Location & Seq

Genomic Coordinates Forward (+)

134739 .. 136298

Gene Structure 1560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000279.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgggtgccgtggtgaattccatagataaagacgaccgtattccaaaagaagccaaggagattctacaatcattggctaccaagtgggaaaatgtagctgattccactgccttgcaggtcatccctctcaagggtgcaatgactaacgaggtgttcgaaataaagtggccaacaagcaccggggaagtctcgcgaaaggttgtggttaggatttacagtgagggtgttgaggtgttctttgacagggataatgagatccgaacatttgaatatatgtcaaagaacggtcagggacctcgtctgcttggccgttttcctaatggccgagttgaagagttcatccatgcacagacactttcagcatctgatctacgtgatccagatatatctgctcttatagctactaaaatgaaggaattccatgatcttgagatgcccggtccaaaggatgtcgtcctctggggcagattgaggagtagtaatgaagttttcccaaagttgtggagttggaaggagatggtacgtagtattgatgatattgataaccgtttcatggaccacagctttgtgaaacctttgcttgtggtatttaccaatacttgcgtgcgtctgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko03010 ko05231 map00564 map01100 map03010 map05231

Pfam Domains

Protein Families

Choline_kin_N Choline_kinase

Protein Analysis

205

Amino Acids

23.52

Weight (kDa)

5.99

Isoelectric Point (pI)

34.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74320
fragaria_vesca	FvH4_7g03960 FvH4_7g03960
malus_domestica	MD00G1152700.v1.1 MD07G1043500.v1.1
prunus_persica	Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1
pyrus_communis	pycom02g23640 pycom07g03090
rosa_chinensis	RchiOBHm_Chr1g0327661 RchiOBHm_Chr1g0347241 RchiOBHm_Chr2g0110271 RchiOBHm_Chr4g0418131
rosa_laevigata	RLG00000029977
rosa_multiflora	Rmu_sc0000279.1_g000036 Rmu_sc0000869.1_g000001 Rmu_sc0043133.1_g000001 Rmu_ssc0000042.1_g000005
rosa_roxburghii	Rroxscaffold_4G00322480
rosa_rugosa	Rorug01G0069200 Rorug01G0069300
rosa_samantha	Rh1AG086400 Rh1CG083900 Rh1CG275300 Rh1DG090300 Rh2CG220400 Rh3CG286700 Rh5AG054300 Rh5AG520300 Rh7DG159000 Rh7DG257900
rosa_wichuraiana	Rw1G006740 Rw3G022890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	5
AccII	CGCG	1 cut(s)	193
AclWI	GGATC	2 cut(s)	250, 371
AcoI	YGGCCR	3 cut(s)	167, 307, 322
AcsI	RAATTY	2 cut(s)	16, 416
AfaI	GTAC	1 cut(s)	522
AfiI	CCNNNNNNNGG	3 cut(s)	130, 131, 553
AgsI	TTSAA	2 cut(s)	269, 332
AluBI	AGCT	3 cut(s)	98, 401, 564
AluI	AGCT	3 cut(s)	98, 401, 564
Alw26I	GTCTC	1 cut(s)	193
AlwI	GGATC	2 cut(s)	250, 371
AlwNI	CAGNNNCTG	1 cut(s)	365
AoxI	GGCC	3 cut(s)	167, 307, 322
ApoI	RAATTY	2 cut(s)	16, 416
ArsI	GACNNNNNNTTYG	2 cut(s)	548, 580
Asp700I	GAANNNNTTC	1 cut(s)	416
AspS9I	GGNCC	3 cut(s)	293, 440, 556
AsuC2I	CCSGG	2 cut(s)	181, 438
AsuHPI	GGTGA	1 cut(s)	25
AsuII	TTCGAA	1 cut(s)	156
AvaII	GGWCC	3 cut(s)	293, 440, 556
BalI	TGGCCA	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	5
BccI	CCATC	1 cut(s)	511
BceAI	ACGGC	1 cut(s)	294
BcnI	CCSGG	2 cut(s)	181, 438
BcoDI	GTCTC	1 cut(s)	193
BfuAI	ACCTGC	1 cut(s)	106
Bme1390I	CCNGG	2 cut(s)	181, 438
Bme18I	GGWCC	3 cut(s)	293, 440, 556
BmgT120I	GGNCC	3 cut(s)	293, 440, 556
BmiI	GGNNCC	2 cut(s)	7, 294
BmrFI	CCNGG	2 cut(s)	181, 438
BmsI	GCATC	2 cut(s)	371, 423
Bpu14I	TTCGAA	1 cut(s)	156
BpuEI	CTTGAG	2 cut(s)	113, 449
BpuMI	CCSGG	2 cut(s)	181, 438
BsaAI	YACGTR	2 cut(s)	374, 524
BsaJI	CCNNGG	3 cut(s)	9, 54, 180
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 131, 553
Bse3DI	GCAATG	1 cut(s)	144
BseDI	CCNNGG	3 cut(s)	9, 54, 180
BseGI	GGATG	3 cut(s)	120, 339, 454
BseLI	CCNNNNNNNGG	3 cut(s)	130, 131, 553
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	602
BseRI	GAGGAG	1 cut(s)	487
Bsh1236I	CGCG	1 cut(s)	193
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	3 cut(s)	169, 309, 324
BshNI	GGYRCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	180, 438
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	3 cut(s)	130, 131, 553
BsmAI	GTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	306
BsnI	GGCC	3 cut(s)	169, 309, 324
Bsp119I	TTCGAA	1 cut(s)	156
Bsp143I	GATC	4 cut(s)	255, 367, 376, 424
Bsp68I	TCGCGA	1 cut(s)	193
BspANI	GGCC	3 cut(s)	169, 309, 324
BspCNI	CTCAG	1 cut(s)	603
BspFNI	CGCG	1 cut(s)	193
BspLI	GGNNCC	2 cut(s)	7, 294
BspMI	ACCTGC	1 cut(s)	106
BspPI	GGATC	2 cut(s)	250, 371
BspT104I	TTCGAA	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	5
BsrDI	GCAATG	1 cut(s)	144
BssECI	CCNNGG	3 cut(s)	9, 54, 180
BssMI	GATC	4 cut(s)	255, 367, 376, 424
BssT1I	CCWWGG	1 cut(s)	54
Bst4CI	ACNGT	4 cut(s)	38, 218, 287, 548
Bst6I	CTCTTC	1 cut(s)	327
BstBAI	YACGTR	2 cut(s)	374, 524
BstBI	TTCGAA	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	605
BstDEI	CTNAG	1 cut(s)	611
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	3 cut(s)	120, 339, 454
BstFNI	CGCG	1 cut(s)	193
BstKTI	GATC	4 cut(s)	258, 370, 379, 427
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	4 cut(s)	255, 367, 376, 424
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstSCI	CCNGG	2 cut(s)	179, 436
BstSNI	TACGTA	1 cut(s)	524
BstUI	CGCG	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	255
BstXI	CCANNNNNNTGG	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	255
BsuRI	GGCC	3 cut(s)	169, 309, 324
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	120, 339, 454
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	105, 223
BtuMI	TCGCGA	1 cut(s)	193
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	605
CaiI	CAGNNNCTG	1 cut(s)	365
Cfr13I	GGNCC	3 cut(s)	293, 440, 556
CseI	GACGC	1 cut(s)	596
Csp6I	GTAC	1 cut(s)	521
CviAII	CATG	3 cut(s)	344, 422, 553
CviJI	RGCY	8 cut(s)	53, 77, 98, 169, 309, 324, 401, 564
CviKI_1	RGCY	8 cut(s)	53, 77, 98, 169, 309, 324, 401, 564
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	1 cut(s)	611
DpnI	GATC	4 cut(s)	257, 369, 378, 426
DpnII	GATC	4 cut(s)	255, 367, 376, 424
EaeI	YGGCCR	3 cut(s)	167, 307, 322
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco105I	TACGTA	1 cut(s)	524
Eco130I	CCWWGG	1 cut(s)	54
Eco47I	GGWCC	3 cut(s)	293, 440, 556
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRI	GAATTC	2 cut(s)	16, 416
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	3 cut(s)	347, 425, 556
FaiI	YATR	8 cut(s)	23, 273, 275, 345, 386, 398, 423, 554
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	3 cut(s)	343, 421, 552
FokI	GGATG	3 cut(s)	107, 326, 461
HaeIII	GGCC	3 cut(s)	169, 309, 324
HapII	CCGG	2 cut(s)	180, 438
HgaI	GACGC	1 cut(s)	596
Hin1II	CATG	3 cut(s)	347, 425, 556
HinfI	GANTC	2 cut(s)	61, 101
HpaII	CCGG	2 cut(s)	180, 438
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	3 cut(s)	260, 367, 612
Hpy188III	TCNNGA	3 cut(s)	192, 380, 428
HpyAV	CCTTC	2 cut(s)	406, 505
HpyCH4III	ACNGT	4 cut(s)	38, 218, 287, 548
HpyCH4IV	ACGT	2 cut(s)	373, 523
HpyCH4V	TGCA	3 cut(s)	115, 137, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	1 cut(s)	611
HpySE526I	ACGT	2 cut(s)	373, 523
Hsp92II	CATG	3 cut(s)	347, 425, 556
Kzo9I	GATC	4 cut(s)	255, 367, 376, 424
LpnPI	CCDG	7 cut(s)	101, 193, 229, 275, 393, 445, 451
LweI	GCATC	2 cut(s)	371, 423
MaeII	ACGT	2 cut(s)	373, 523
MalI	GATC	4 cut(s)	257, 369, 378, 426
MboI	GATC	4 cut(s)	255, 367, 376, 424
MboII	GAAGA	1 cut(s)	344
MflI	RGATCY	1 cut(s)	255
MlsI	TGGCCA	1 cut(s)	169
MluCI	AATT	2 cut(s)	16, 416
MluNI	TGGCCA	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	488
MnlI	CCTC	8 cut(s)	135, 142, 214, 223, 306, 465, 467, 606
Mox20I	TGGCCA	1 cut(s)	169
MroXI	GAANNNNTTC	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	169
Msp20I	TGGCCA	1 cut(s)	169
MspI	CCGG	2 cut(s)	180, 438
MspR9I	CCNGG	2 cut(s)	181, 438
MvnI	CGCG	1 cut(s)	193
MwoI	GCNNNNNNNGC	1 cut(s)	398
NciI	CCSGG	2 cut(s)	181, 438
NdeII	GATC	4 cut(s)	255, 367, 376, 424
NlaIII	CATG	3 cut(s)	347, 425, 556
NlaIV	GGNNCC	2 cut(s)	7, 294
NmeAIII	GCCGAG	1 cut(s)	350
NruI	TCGCGA	1 cut(s)	193
NspV	TTCGAA	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	61, 101
PflFI	GACNNNGTC	1 cut(s)	297
Ppu21I	YACGTR	2 cut(s)	374, 524
PpuMI	RGGWCCY	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	7, 294
PspPI	GGNCC	3 cut(s)	293, 440, 556
PspPPI	RGGWCCY	1 cut(s)	293
PstNI	CAGNNNCTG	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	255
PsyI	GACNNNGTC	1 cut(s)	297
RruI	TCGCGA	1 cut(s)	193
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
Sau3AI	GATC	4 cut(s)	255, 367, 376, 424
Sau96I	GGNCC	3 cut(s)	293, 440, 556
ScrFI	CCNGG	2 cut(s)	181, 438
SfaNI	GCATC	2 cut(s)	371, 423
SfuI	TTCGAA	1 cut(s)	156
SinI	GGWCC	3 cut(s)	293, 440, 556
SmlI	CTYRAG	2 cut(s)	128, 428
SmoI	CTYRAG	2 cut(s)	128, 428
SnaBI	TACGTA	1 cut(s)	524
Sse9I	AATT	2 cut(s)	16, 416
StyD4I	CCNGG	2 cut(s)	179, 436
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	4 cut(s)	38, 218, 287, 548
TaiI	ACGT	2 cut(s)	376, 526
TaqI	TCGA	1 cut(s)	156
TasI	AATT	2 cut(s)	16, 416
TfiI	GAWTC	2 cut(s)	61, 101
TscAI	CASTG	2 cut(s)	112, 223
TspDTI	ATGAA	4 cut(s)	328, 425, 498, 541
TspRI	CASTG	2 cut(s)	112, 223
Tth111I	GACNNNGTC	1 cut(s)	297
VpaK11BI	GGWCC	3 cut(s)	293, 440, 556
XapI	RAATTY	2 cut(s)	16, 416
XmnI	GAANNNNTTC	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.