Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000042.1

Orthogroup ID

OG0002182

Physical Location & Seq

Genomic Coordinates Forward (+)

16782 .. 19373

Gene Structure 2592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000042.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgtgctacatctttcttttcaattgtgaatttcagacactttcagcatctgatctacgtgatccagatatatctgctcttatagctactaaaatgaaggaattccatgatcttgagatgcccggtccaaaggatgtcgtcctctggggcagattgagaaattggctgagtacagccaagagattgtgtagtccagaagaagctaatgaatttcagttagattccattgaaaaggaaatctctatactggagaaggagctctcagtactgaatcagcagttaggtttctgccacaatgatttacagtatggaaacataatgattgaggaagagagtaaaacgataacgataattgactatgagtatgcaagttataatcctgttgcatttgacatagcaaaccatttctgtgagatggcggctgactatcacacagatacccctcatattttagactacagtaaatatcctggcaatcaacctagtgacaaagaagtggagcagctagttgaagatgttgagaagtatacccttgcagaccatctgttctggggcttatggggaataatatcggaacatgtgaatgatattgattttgactacatgcaatatgcaaagcagaggtttcaacagtactggggaaccaaggctttcctattgggttctgttggatcttccccagacacagggactgatggtaaccgtactacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko03010 ko05231 map00564 map01100 map03010 map05231

Pfam Domains

Protein Families

Choline_kin_N Choline_kinase

Protein Analysis

237

Amino Acids

27.34

Weight (kDa)

4.48

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74320
fragaria_vesca	FvH4_7g03960 FvH4_7g03960
malus_domestica	MD00G1152700.v1.1 MD07G1043500.v1.1
prunus_persica	Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1
pyrus_communis	pycom02g23640 pycom07g03090
rosa_chinensis	RchiOBHm_Chr1g0327661 RchiOBHm_Chr1g0347241 RchiOBHm_Chr2g0110271 RchiOBHm_Chr4g0418131
rosa_laevigata	RLG00000029977
rosa_multiflora	Rmu_sc0000279.1_g000036 Rmu_sc0000869.1_g000001 Rmu_sc0043133.1_g000001 Rmu_ssc0000042.1_g000005
rosa_roxburghii	Rroxscaffold_4G00322480
rosa_rugosa	Rorug01G0069200 Rorug01G0069300
rosa_samantha	Rh1AG086400 Rh1CG083900 Rh1CG275300 Rh1DG090300 Rh2CG220400 Rh3CG286700 Rh5AG054300 Rh5AG520300 Rh7DG159000 Rh7DG257900
rosa_wichuraiana	Rw1G006740 Rw3G022890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AccI	GTMKAC	1 cut(s)	527
AciI	CCGC	1 cut(s)	419
AclWI	GGATC	2 cut(s)	56, 679
AcsI	RAATTY	3 cut(s)	29, 101, 209
AfaI	GTAC	4 cut(s)	172, 267, 635, 706
AfiI	CCNNNNNNNGG	1 cut(s)	686
AflIII	ACRYGT	1 cut(s)	577
AgsI	TTSAA	4 cut(s)	22, 230, 512, 629
AjnI	CCWGG	1 cut(s)	469
AluBI	AGCT	4 cut(s)	86, 203, 259, 505
AluI	AGCT	4 cut(s)	86, 203, 259, 505
Alw21I	GWGCWC	1 cut(s)	261
AlwI	GGATC	2 cut(s)	56, 679
AlwNI	CAGNNNCTG	2 cut(s)	50, 692
ApeKI	GCWGC	1 cut(s)	502
ApoI	RAATTY	3 cut(s)	29, 101, 209
Asp700I	GAANNNNTTC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	123
AvaII	GGWCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	3 cut(s)	409, 549, 689
BciT130I	CCWGG	1 cut(s)	471
BcnI	CCSGG	1 cut(s)	123
BfaI	CTAG	2 cut(s)	483, 506
BfmI	CTRYAG	1 cut(s)	457
BisI	GCNGC	2 cut(s)	420, 503
BlsI	GCNGC	2 cut(s)	421, 504
BmcAI	AGTACT	2 cut(s)	267, 635
Bme1390I	CCNGG	2 cut(s)	123, 471
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	643
BmrFI	CCNGG	2 cut(s)	123, 471
BmrI	ACTGGG	1 cut(s)	646
BmsI	GCATC	2 cut(s)	56, 108
BmuI	ACTGGG	1 cut(s)	646
BpmI	CTGGAG	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	645
Bsc4I	CCNNNNNNNGG	1 cut(s)	686
Bse1I	ACTGG	2 cut(s)	252, 641
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	1 cut(s)	645
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	686
BseMII	CTCAG	2 cut(s)	158, 276
BseNI	ACTGG	2 cut(s)	252, 641
BseXI	GCAGC	1 cut(s)	514
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	703
BslI	CCNNNNNNNGG	1 cut(s)	686
BsmFI	GGGAC	1 cut(s)	703
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	4 cut(s)	52, 61, 109, 671
BspACI	CCGC	1 cut(s)	419
BspCNI	CTCAG	2 cut(s)	159, 275
BspLI	GGNNCC	1 cut(s)	643
BspPI	GGATC	2 cut(s)	56, 679
BsrI	ACTGG	2 cut(s)	252, 641
BssECI	CCNNGG	1 cut(s)	645
BssMI	GATC	4 cut(s)	52, 61, 109, 671
BssNAI	GTATAC	1 cut(s)	528
BssT1I	CCWWGG	1 cut(s)	645
Bst1107I	GTATAC	1 cut(s)	528
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	4 cut(s)	306, 461, 633, 704
Bst6I	CTCTTC	1 cut(s)	324
BstBAI	YACGTR	1 cut(s)	59
BstDEI	CTNAG	3 cut(s)	167, 262, 711
BstEII	GGTNACC	1 cut(s)	698
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	4 cut(s)	55, 64, 112, 674
BstMBI	GATC	4 cut(s)	52, 61, 109, 671
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	471
BstNSI	RCATGY	2 cut(s)	581, 607
BstPI	GGTNACC	1 cut(s)	698
BstSCI	CCNGG	2 cut(s)	121, 469
BstSFI	CTRYAG	1 cut(s)	457
BstV1I	GCAGC	1 cut(s)	514
BstX2I	RGATCY	1 cut(s)	671
BstYI	RGATCY	1 cut(s)	671
BstZ17I	GTATAC	1 cut(s)	528
BtsCI	GGATG	1 cut(s)	139
CaiI	CAGNNNCTG	2 cut(s)	50, 692
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	4 cut(s)	171, 266, 634, 705
CviAII	CATG	3 cut(s)	107, 578, 604
CviJI	RGCY	9 cut(s)	86, 166, 176, 203, 259, 422, 505, 555, 650
CviKI_1	RGCY	9 cut(s)	86, 166, 176, 203, 259, 422, 505, 555, 650
CviQI	GTAC	4 cut(s)	171, 266, 634, 705
DdeI	CTNAG	3 cut(s)	167, 262, 711
DpnI	GATC	4 cut(s)	54, 63, 111, 673
DpnII	GATC	4 cut(s)	52, 61, 109, 671
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	645
Eco24I	GRGCYC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	125
Eco53kI	GAGCTC	1 cut(s)	259
Eco91I	GGTNACC	1 cut(s)	698
EcoICRI	GAGCTC	1 cut(s)	259
EcoO65I	GGTNACC	1 cut(s)	698
EcoRI	GAATTC	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	645
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	645
FaeI	CATG	3 cut(s)	110, 581, 607
FaqI	GGGAC	1 cut(s)	703
FatI	CATG	3 cut(s)	106, 577, 603
FblI	GTMKAC	1 cut(s)	527
Fnu4HI	GCNGC	2 cut(s)	420, 503
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	2 cut(s)	420, 503
FspBI	CTAG	2 cut(s)	483, 506
GluI	GCNGC	2 cut(s)	420, 503
GsuI	CTGGAG	1 cut(s)	269
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	3 cut(s)	110, 581, 607
HinfI	GANTC	2 cut(s)	221, 271
HpaII	CCGG	1 cut(s)	123
Hpy166II	GTNNAC	1 cut(s)	528
Hpy188I	TCNGA	3 cut(s)	36, 52, 574
Hpy188III	TCNNGA	3 cut(s)	65, 113, 194
Hpy8I	GTNNAC	1 cut(s)	528
HpyAV	CCTTC	2 cut(s)	91, 247
HpyCH4III	ACNGT	4 cut(s)	306, 461, 633, 704
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	5 cut(s)	368, 386, 536, 607, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	3 cut(s)	167, 262, 711
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	3 cut(s)	110, 581, 607
Kzo9I	GATC	4 cut(s)	52, 61, 109, 671
LmnI	GCTCC	2 cut(s)	256, 499
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	2 cut(s)	56, 108
MaeI	CTAG	2 cut(s)	483, 506
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	485, 698
MalI	GATC	4 cut(s)	54, 63, 111, 673
MboI	GATC	4 cut(s)	52, 61, 109, 671
MboII	GAAGA	4 cut(s)	209, 341, 524, 666
MfeI	CAATTG	1 cut(s)	22
MflI	RGATCY	1 cut(s)	671
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	6 cut(s)	22, 29, 101, 160, 209, 351
MmeI	TCCRAC	1 cut(s)	649
MnlI	CCTC	4 cut(s)	152, 319, 453, 615
MroXI	GAANNNNTTC	1 cut(s)	101
MslI	CAYNNNNRTG	2 cut(s)	408, 582
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	123, 471
MunI	CAATTG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	471
MwoI	GCNNNNNNNGC	1 cut(s)	83
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	4 cut(s)	52, 61, 109, 671
NlaIII	CATG	3 cut(s)	110, 581, 607
NlaIV	GGNNCC	1 cut(s)	643
NmuCI	GTSAC	1 cut(s)	485
NspI	RCATGY	2 cut(s)	581, 607
PciI	ACATGT	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	221, 271
PkrI	GCNGC	2 cut(s)	421, 504
Ppu21I	YACGTR	1 cut(s)	59
PscI	ACATGT	1 cut(s)	577
PsiI	TTATAA	1 cut(s)	375
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	469
PspEI	GGTNACC	1 cut(s)	698
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	643
PspPI	GGNCC	1 cut(s)	125
PstNI	CAGNNNCTG	2 cut(s)	50, 692
PsuI	RGATCY	1 cut(s)	671
RsaI	GTAC	4 cut(s)	172, 267, 635, 706
RsaNI	GTAC	4 cut(s)	171, 266, 634, 705
RseI	CAYNNNNRTG	2 cut(s)	408, 582
SacI	GAGCTC	1 cut(s)	261
SatI	GCNGC	2 cut(s)	420, 503
Sau3AI	GATC	4 cut(s)	52, 61, 109, 671
Sau96I	GGNCC	1 cut(s)	125
ScaI	AGTACT	2 cut(s)	267, 635
ScrFI	CCNGG	2 cut(s)	123, 471
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	8 cut(s)	61, 88, 205, 261, 286, 484, 507, 626
SfaNI	GCATC	2 cut(s)	56, 108
SfcI	CTRYAG	1 cut(s)	457
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	2 cut(s)	408, 582
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	6 cut(s)	22, 29, 101, 160, 209, 351
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	2 cut(s)	483, 506
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	2 cut(s)	121, 469
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	4 cut(s)	306, 461, 633, 704
TaiI	ACGT	1 cut(s)	61
TasI	AATT	6 cut(s)	22, 29, 101, 160, 209, 351
TatI	WGTACW	3 cut(s)	170, 265, 633
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	2 cut(s)	221, 271
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	1 cut(s)	502
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	2 cut(s)	110, 222
VpaK11BI	GGWCC	1 cut(s)	125
XapI	RAATTY	3 cut(s)	29, 101, 209
XceI	RCATGY	2 cut(s)	581, 607
XmiI	GTMKAC	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	101
XspI	CTAG	2 cut(s)	483, 506
ZrmI	AGTACT	2 cut(s)	267, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.