Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0043133.1

Orthogroup ID

OG0002182

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2389

Gene Structure 2389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0043133.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 604 bp

aaattggctgagtacagccaagagattgtgtagtccagaagaagctaatgaatttcagttagattccattgaaaaggaaatctctatactggagaaggagctctcagtactgaatcagcagttaggtttctgccacaatgatttacagtatggaaacataatgattgaggaagagagtaaaacgataacgataattgactatgagtatgcaagttataatcctgttgcatttgacatagcaaaccatttctgtgagatggcggctgactatcacacagatacccctcatattttagactacagtaaatatcctggcttagaggagcgcaagaggtttgttcgtatgtatctgagttcttcaggcaatcaacctagtgacaaagaagtggagcagctagttgaagatgttgagaagtatacccttgcagaccatctgttctggggcttatggggaataatatcggaacatgtgaatgatattgattttgactacatgcaatatgcaaagcagaggtttcaacagtactggagaaccaaggctttgctattgggttctgttggatcttccccagacacagggactgatggtaaccgtactacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko03010 ko05231 map00564 map01100 map03010 map05231

Pfam Domains

Protein Families

Choline_kin_N Choline_kinase

Protein Analysis

200

Amino Acids

23.2

Weight (kDa)

4.6

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74320
fragaria_vesca	FvH4_7g03960 FvH4_7g03960
malus_domestica	MD00G1152700.v1.1 MD07G1043500.v1.1
prunus_persica	Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1 Prupe.2G044500_v2.0.a1
pyrus_communis	pycom02g23640 pycom07g03090
rosa_chinensis	RchiOBHm_Chr1g0327661 RchiOBHm_Chr1g0347241 RchiOBHm_Chr2g0110271 RchiOBHm_Chr4g0418131
rosa_laevigata	RLG00000029977
rosa_multiflora	Rmu_sc0000279.1_g000036 Rmu_sc0000869.1_g000001 Rmu_sc0043133.1_g000001 Rmu_ssc0000042.1_g000005
rosa_roxburghii	Rroxscaffold_4G00322480
rosa_rugosa	Rorug01G0069200 Rorug01G0069300
rosa_samantha	Rh1AG086400 Rh1CG083900 Rh1CG275300 Rh1DG090300 Rh2CG220400 Rh3CG286700 Rh5AG054300 Rh5AG520300 Rh7DG159000 Rh7DG257900
rosa_wichuraiana	Rw1G006740 Rw3G022890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	217
AccI	GTMKAC	1 cut(s)	417
AciI	CCGC	1 cut(s)	261
AclWI	GGATC	1 cut(s)	569
AcsI	RAATTY	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	343
AfaI	GTAC	4 cut(s)	14, 109, 525, 596
AfiI	CCNNNNNNNGG	1 cut(s)	576
AflIII	ACRYGT	1 cut(s)	467
AgsI	TTSAA	3 cut(s)	72, 402, 519
AjnI	CCWGG	1 cut(s)	311
AluBI	AGCT	3 cut(s)	45, 101, 395
AluI	AGCT	3 cut(s)	45, 101, 395
Alw21I	GWGCWC	1 cut(s)	103
AlwI	GGATC	1 cut(s)	569
AlwNI	CAGNNNCTG	1 cut(s)	582
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	404
BccI	CCATC	3 cut(s)	251, 439, 579
BciT130I	CCWGG	1 cut(s)	313
BfaI	CTAG	2 cut(s)	373, 396
BfmI	CTRYAG	1 cut(s)	299
BisI	GCNGC	2 cut(s)	262, 393
BlsI	GCNGC	2 cut(s)	263, 394
BmcAI	AGTACT	2 cut(s)	109, 525
Bme1390I	CCNGG	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	313
BpmI	CTGGAG	2 cut(s)	111, 548
BsaJI	CCNNGG	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	1 cut(s)	576
Bse1I	ACTGG	2 cut(s)	94, 531
BseBI	CCWGG	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	535
BseLI	CCNNNNNNNGG	1 cut(s)	576
BseMII	CTCAG	2 cut(s)	118, 342
BseNI	ACTGG	2 cut(s)	94, 531
BseRI	GAGGAG	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	1 cut(s)	576
BsmFI	GGGAC	1 cut(s)	593
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	561
BspACI	CCGC	1 cut(s)	261
BspCNI	CTCAG	2 cut(s)	117, 343
BspPI	GGATC	1 cut(s)	569
BsrI	ACTGG	2 cut(s)	94, 531
BssECI	CCNNGG	1 cut(s)	535
BssMI	GATC	1 cut(s)	561
BssNAI	GTATAC	1 cut(s)	418
BssT1I	CCWWGG	1 cut(s)	535
Bst1107I	GTATAC	1 cut(s)	418
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	4 cut(s)	148, 303, 523, 594
Bst6I	CTCTTC	1 cut(s)	166
BstDEI	CTNAG	5 cut(s)	9, 104, 317, 351, 601
BstEII	GGTNACC	1 cut(s)	588
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	1 cut(s)	564
BstMBI	GATC	1 cut(s)	561
BstNI	CCWGG	1 cut(s)	313
BstNSI	RCATGY	2 cut(s)	471, 497
BstPI	GGTNACC	1 cut(s)	588
BstSCI	CCNGG	1 cut(s)	311
BstSFI	CTRYAG	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	561
BstYI	RGATCY	1 cut(s)	561
BstZ17I	GTATAC	1 cut(s)	418
CaiI	CAGNNNCTG	1 cut(s)	582
CfoI	GCGC	1 cut(s)	328
Csp6I	GTAC	4 cut(s)	13, 108, 524, 595
CviAII	CATG	2 cut(s)	468, 494
CviJI	RGCY	9 cut(s)	8, 18, 45, 101, 264, 316, 395, 445, 540
CviKI_1	RGCY	9 cut(s)	8, 18, 45, 101, 264, 316, 395, 445, 540
CviQI	GTAC	4 cut(s)	13, 108, 524, 595
DdeI	CTNAG	5 cut(s)	9, 104, 317, 351, 601
DpnI	GATC	1 cut(s)	563
DpnII	GATC	1 cut(s)	561
Eam1104I	CTCTTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	166
Ecl136II	GAGCTC	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	535
Eco24I	GRGCYC	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	343
Eco91I	GGTNACC	1 cut(s)	588
EcoICRI	GAGCTC	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	588
EcoRII	CCWGG	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	535
EcoT38I	GRGCYC	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	535
FaeI	CATG	2 cut(s)	471, 497
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	2 cut(s)	467, 493
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	262, 393
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	2 cut(s)	262, 393
FspBI	CTAG	2 cut(s)	373, 396
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	2 cut(s)	262, 393
GsuI	CTGGAG	2 cut(s)	111, 548
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	2 cut(s)	471, 497
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	2 cut(s)	63, 113
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	2 cut(s)	352, 464
Hpy188III	TCNNGA	1 cut(s)	36
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	1 cut(s)	89
HpyCH4III	ACNGT	4 cut(s)	148, 303, 523, 594
HpyCH4V	TGCA	5 cut(s)	210, 228, 426, 497, 504
HpyF3I	CTNAG	5 cut(s)	9, 104, 317, 351, 601
Hsp92II	CATG	2 cut(s)	471, 497
HspAI	GCGC	1 cut(s)	326
Kzo9I	GATC	1 cut(s)	561
LmnI	GCTCC	3 cut(s)	98, 323, 389
Lsp1109I	GCAGC	1 cut(s)	404
MaeI	CTAG	2 cut(s)	373, 396
MaeIII	GTNAC	2 cut(s)	375, 588
MalI	GATC	1 cut(s)	563
MboI	GATC	1 cut(s)	561
MboII	GAAGA	5 cut(s)	51, 183, 349, 414, 556
MflI	RGATCY	1 cut(s)	561
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	3 cut(s)	2, 51, 193
MmeI	TCCRAC	1 cut(s)	539
MnlI	CCTC	5 cut(s)	161, 295, 314, 325, 505
MslI	CAYNNNNRTG	2 cut(s)	250, 472
MspR9I	CCNGG	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	313
NdeII	GATC	1 cut(s)	561
NlaIII	CATG	2 cut(s)	471, 497
NmuCI	GTSAC	1 cut(s)	375
NspI	RCATGY	2 cut(s)	471, 497
PciI	ACATGT	1 cut(s)	467
PfeI	GAWTC	2 cut(s)	63, 113
PkrI	GCNGC	2 cut(s)	263, 394
PscI	ACATGT	1 cut(s)	467
PsiI	TTATAA	1 cut(s)	217
Psp124BI	GAGCTC	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	311
PspEI	GGTNACC	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	311
PstNI	CAGNNNCTG	1 cut(s)	582
PsuI	RGATCY	1 cut(s)	561
RsaI	GTAC	4 cut(s)	14, 109, 525, 596
RsaNI	GTAC	4 cut(s)	13, 108, 524, 595
RseI	CAYNNNNRTG	2 cut(s)	250, 472
SacI	GAGCTC	1 cut(s)	103
SatI	GCNGC	2 cut(s)	262, 393
Sau3AI	GATC	1 cut(s)	561
ScaI	AGTACT	2 cut(s)	109, 525
ScrFI	CCNGG	1 cut(s)	313
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	7 cut(s)	47, 103, 128, 336, 374, 397, 516
SfcI	CTRYAG	1 cut(s)	299
SmiMI	CAYNNNNRTG	2 cut(s)	250, 472
Sse9I	AATT	3 cut(s)	2, 51, 193
SsiI	CCGC	1 cut(s)	261
SspMI	CTAG	2 cut(s)	373, 396
SstI	GAGCTC	1 cut(s)	103
StyD4I	CCNGG	1 cut(s)	311
StyI	CCWWGG	1 cut(s)	535
TaaI	ACNGT	4 cut(s)	148, 303, 523, 594
TasI	AATT	3 cut(s)	2, 51, 193
TatI	WGTACW	3 cut(s)	12, 107, 523
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	2 cut(s)	63, 113
TseFI	GTSAC	1 cut(s)	375
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	375
TspDTI	ATGAA	1 cut(s)	64
XapI	RAATTY	1 cut(s)	51
XceI	RCATGY	2 cut(s)	471, 497
XmiI	GTMKAC	1 cut(s)	417
XspI	CTAG	2 cut(s)	373, 396
ZrmI	AGTACT	2 cut(s)	109, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.